BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0336.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773554.1| 30S ribosomal protein S3 [Herbaspirillum ser... 475 e-132 ref|YP_004751067.1| 30S ribosomal protein S3p (S3e) [Collimonas ... 423 e-116 ref|YP_001355095.1| small subunit ribosomal protein S3 [Janthino... 416 e-114 ref|YP_001101390.1| 30S ribosomal protein S3 [Herminiimonas arse... 407 e-112 ref|ZP_04580001.1| small subunit ribosomal protein S3 [Oxalobact... 394 e-108 >ref|YP_003773554.1| 30S ribosomal protein S3 [Herbaspirillum seropedicae SmR1] gb|ADJ61646.1| 30S ribosomal subunit S3 protein [Herbaspirillum seropedicae SmR1] Length = 272 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 271/272 (99%), Positives = 271/272 (99%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA Sbjct: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGELEDDKKRRGPRRDDGKPGARP 240 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGE EDDKKRRGPRRDDGKPGARP Sbjct: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP 240 Query: 241 RSKTGAPGAGAKRGGGRPQAADAGVSAEKAGE 272 RSKTGAPGAGAKRGGGRPQAADAGVSAEKAGE Sbjct: 241 RSKTGAPGAGAKRGGGRPQAADAGVSAEKAGE 272 >ref|YP_004751067.1| 30S ribosomal protein S3p (S3e) [Collimonas fungivorans Ter331] gb|AEK60244.1| SSU ribosomal protein S3p (S3e) [Collimonas fungivorans Ter331] Length = 280 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 225/244 (92%), Positives = 233/244 (95%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAVTRNWGSRWYAGN+NFA ML EDLKVRA+LKKKLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNSNFAQMLGEDLKVRAFLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLKSAL KLMGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALTKLMGVPVHVNIEEIRKPEIDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGELEDDKKRRGPRRDDGKPGARP 240 DIDYGFGEAETTYGIIG+KVWVYKGDRLANG++PV+ +DDKKRRGPRRDDGKP RP Sbjct: 181 DIDYGFGEAETTYGIIGIKVWVYKGDRLANGDAPVIDVPNDDDKKRRGPRRDDGKPAGRP 240 Query: 241 RSKT 244 R+KT Sbjct: 241 RAKT 244 >ref|YP_001355095.1| small subunit ribosomal protein S3 [Janthinobacterium sp. Marseille] sp|A6T3J8|RS3_JANMA RecName: Full=30S ribosomal protein S3 gb|ABR89136.1| small subunit ribosomal protein S3 [Janthinobacterium sp. Marseille] Length = 283 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 236/283 (83%), Positives = 244/283 (86%), Gaps = 11/283 (3%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV+RNW SRWYAGN+NFA MLNEDLKVRAYLK KLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVSRNWASRWYAGNSNFATMLNEDLKVRAYLKTKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLKSAL K+MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALTKMMGVPVHVNIEEIRKPETDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIAR EWYREGRVPLHTLRA Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGELEDDKKRRGPRRDDGKPGARP 240 DIDYGFGEAETTYGIIG+KVWVYKGDRLANGE+PV+ +DDKKRRGPRRDDGKP RP Sbjct: 181 DIDYGFGEAETTYGIIGIKVWVYKGDRLANGEAPVIDVASDDDKKRRGPRRDDGKPSGRP 240 Query: 241 RS-----------KTGAPGAGAKRGGGRPQAADAGVSAEKAGE 272 R+ AP A R A DA VSAEKAGE Sbjct: 241 RAPRPEGQPGAAAPGSAPAAKRVRAKKPDGAVDAAVSAEKAGE 283 >ref|YP_001101390.1| 30S ribosomal protein S3 [Herminiimonas arsenicoxydans] sp|A4G9T2|RS3_HERAR RecName: Full=30S ribosomal protein S3 emb|CAL63269.1| 30S ribosomal protein S3 [Herminiimonas arsenicoxydans] Length = 283 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 231/284 (81%), Positives = 244/284 (85%), Gaps = 13/284 (4%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRL+VTRNW SRWYAGN+NFA MLNEDLKVRAYLK KLKNASVGRV+IERP Sbjct: 1 MGQKIHPTGFRLSVTRNWASRWYAGNSNFATMLNEDLKVRAYLKTKLKNASVGRVIIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLKSAL K+MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALTKMMGVPVHVNIEEIRKPETDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIAR EWYREGRVPLHTLRA Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGELEDDKKRRGPRRDDGKPGARP 240 +IDYGFGEAETTYGIIG+KVWVYKGDRL +GE PV + + EDD KRRGPRRDDGKP +RP Sbjct: 181 EIDYGFGEAETTYGIIGIKVWVYKGDRLPSGEPPVDLTK-EDDTKRRGPRRDDGKPSSRP 239 Query: 241 RS-----------KTGAPGAGAKRGGGRPQAA-DAGVSAEKAGE 272 R+ GA A + +P AA D V AEKAGE Sbjct: 240 RTARPEGQPGAAAAPGAAPAAKRVRAKKPDAAVDGAVPAEKAGE 283 >ref|ZP_04580001.1| small subunit ribosomal protein S3 [Oxalobacter formigenes OXCC13] gb|EEO30974.1| small subunit ribosomal protein S3 [Oxalobacter formigenes OXCC13] Length = 282 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 217/259 (83%), Positives = 228/259 (88%), Gaps = 6/259 (2%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV RNW SRWYAGN NFA MLNEDLK RAYLKKKLKNASVG+VVIERP Sbjct: 1 MGQKIHPTGFRLAVARNWSSRWYAGNTNFAGMLNEDLKARAYLKKKLKNASVGQVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNAR TIYSSRPGVVIGKKGEDIEVLKS L+K+MGVPVHVNIEE+RKPE AQLIADSI Sbjct: 61 AKNARFTIYSSRPGVVIGKKGEDIEVLKSDLSKIMGVPVHVNIEEVRKPEIHAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLEKRIMFRRAM+RAMQNAMRLGA GIKIMSSGRLNGIEIAR EWYREGRVPLHTLRA Sbjct: 121 TQQLEKRIMFRRAMRRAMQNAMRLGAVGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGELEDDKKRRGPRRDDGKPGARP 240 DIDYGF EA+TTYGIIGVKVWVYKGDRL NGE+P + E+DKKRRGPRR+DG+PG R Sbjct: 181 DIDYGFSEAQTTYGIIGVKVWVYKGDRLENGEAPKIEAPAEEDKKRRGPRREDGRPGGRQ 240 Query: 241 RSKTG------APGAGAKR 253 R K AP AGAKR Sbjct: 241 RVKKADGAASEAPSAGAKR 259