BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0334.p         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773552.1| 30S ribosomal protein S19 [Herbaspirillum se...   163   8e-39
ref|ZP_04577849.1| small subunit ribosomal protein S19 [Oxalobac...   162   2e-38
ref|YP_001101392.1| 30S ribosomal protein S19 [Herminiimonas ars...   161   3e-38
ref|YP_004751065.1| 30S ribosomal protein S19p (S15e) [Collimona...   161   4e-38
ref|YP_004028700.1| SSU ribosomal protein S19P [Burkholderia rhi...   156   1e-36

>ref|YP_003773552.1| 30S ribosomal protein S19 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61644.1| 30S ribosomal subunit S19 protein [Herbaspirillum seropedicae
          SmR1]
          Length = 91

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 90/91 (98%), Positives = 90/91 (98%)

Query: 1  MTRSLKKGPFCDAHLVKKVEAAQATKDKKPIKTWSRRSTIMPDFIGLTIAVHNGKAHVPV 60
          MTRSLKKGPFCDAHLVKKVEAAQATKDKKPIKTWSRRSTIMPDFIGLTIAVHNGK HVPV
Sbjct: 1  MTRSLKKGPFCDAHLVKKVEAAQATKDKKPIKTWSRRSTIMPDFIGLTIAVHNGKQHVPV 60

Query: 61 YVSENMVGHKLGEFALTRTFKGHAADKKAKK 91
          YVSENMVGHKLGEFALTRTFKGHAADKKAKK
Sbjct: 61 YVSENMVGHKLGEFALTRTFKGHAADKKAKK 91


>ref|ZP_04577849.1| small subunit ribosomal protein S19 [Oxalobacter formigenes
          HOxBLS]
 gb|EEO28811.1| small subunit ribosomal protein S19 [Oxalobacter formigenes
          HOxBLS]
          Length = 91

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/91 (93%), Positives = 89/91 (97%)

Query: 1  MTRSLKKGPFCDAHLVKKVEAAQATKDKKPIKTWSRRSTIMPDFIGLTIAVHNGKAHVPV 60
          MTRSLKKGPFCDAHL+ KVEAAQA+KDK+PIKTWSRRSTIMPDFIGLTIAVHNGK HVPV
Sbjct: 1  MTRSLKKGPFCDAHLIAKVEAAQASKDKRPIKTWSRRSTIMPDFIGLTIAVHNGKQHVPV 60

Query: 61 YVSENMVGHKLGEFALTRTFKGHAADKKAKK 91
          Y+SENMVGHKLGEFALTRTFKGHAADKKAKK
Sbjct: 61 YISENMVGHKLGEFALTRTFKGHAADKKAKK 91


>ref|YP_001101392.1| 30S ribosomal protein S19 [Herminiimonas arsenicoxydans]
 ref|YP_001355097.1| 30S ribosomal protein S19 [Janthinobacterium sp. Marseille]
 ref|ZP_08274068.1| SSU ribosomal protein S19p (S15e) [Oxalobacteraceae bacterium
          IMCC9480]
 sp|A4G9T4|RS19_HERAR RecName: Full=30S ribosomal protein S19
 sp|A6T3K0|RS19_JANMA RecName: Full=30S ribosomal protein S19
 emb|CAL63271.1| 30S ribosomal subunit protein S19 [Herminiimonas arsenicoxydans]
 gb|ABR91657.1| small subunit ribosomal protein S19 [Janthinobacterium sp.
          Marseille]
 gb|EGF32470.1| SSU ribosomal protein S19p (S15e) [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 91

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/91 (96%), Positives = 88/91 (96%)

Query: 1  MTRSLKKGPFCDAHLVKKVEAAQATKDKKPIKTWSRRSTIMPDFIGLTIAVHNGKAHVPV 60
          MTRSLKKGPFCDAHLVKKVE AQA KDKKPIKTWSRRSTIMPDFIGLTIAVHNGK HVPV
Sbjct: 1  MTRSLKKGPFCDAHLVKKVETAQAIKDKKPIKTWSRRSTIMPDFIGLTIAVHNGKQHVPV 60

Query: 61 YVSENMVGHKLGEFALTRTFKGHAADKKAKK 91
          YVSENMVGHKLGEFALTRTFKGHAADKKAKK
Sbjct: 61 YVSENMVGHKLGEFALTRTFKGHAADKKAKK 91


>ref|YP_004751065.1| 30S ribosomal protein S19p (S15e) [Collimonas fungivorans Ter331]
 gb|AEK60242.1| SSU ribosomal protein S19p (S15e) [Collimonas fungivorans Ter331]
          Length = 91

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 88/91 (96%), Positives = 88/91 (96%)

Query: 1  MTRSLKKGPFCDAHLVKKVEAAQATKDKKPIKTWSRRSTIMPDFIGLTIAVHNGKAHVPV 60
          MTRSLKKGPFCDAHLVKKVE AQA KDKKPIKTWSRRSTIMPDFIGLTIAVHNGK HVPV
Sbjct: 1  MTRSLKKGPFCDAHLVKKVETAQAVKDKKPIKTWSRRSTIMPDFIGLTIAVHNGKQHVPV 60

Query: 61 YVSENMVGHKLGEFALTRTFKGHAADKKAKK 91
          YVSENMVGHKLGEFALTRTFKGHAADKKAKK
Sbjct: 61 YVSENMVGHKLGEFALTRTFKGHAADKKAKK 91


>ref|YP_004028700.1| SSU ribosomal protein S19P [Burkholderia rhizoxinica HKI 454]
 emb|CBW74556.1| SSU ribosomal protein S19P [Burkholderia rhizoxinica HKI 454]
          Length = 91

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/91 (89%), Positives = 88/91 (96%)

Query: 1  MTRSLKKGPFCDAHLVKKVEAAQATKDKKPIKTWSRRSTIMPDFIGLTIAVHNGKAHVPV 60
          M RS+KKGPFCDAHL+KKVEAA A++DKKPIKTWSRRSTI+PDFIGLTIAVHNG+ HVPV
Sbjct: 1  MARSVKKGPFCDAHLLKKVEAAAASRDKKPIKTWSRRSTILPDFIGLTIAVHNGRQHVPV 60

Query: 61 YVSENMVGHKLGEFALTRTFKGHAADKKAKK 91
          YVSENMVGHKLGEFALTRTFKGHAADKKAK+
Sbjct: 61 YVSENMVGHKLGEFALTRTFKGHAADKKAKR 91