BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0333.p (275 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773551.1| 50S ribosomal protein L2 [Herbaspirillum ser... 490 e-136 ref|YP_004751064.1| 50S ribosomal protein L2p (L8e) [Collimonas ... 464 e-129 ref|YP_001355098.1| 50S ribosomal protein L2 [Janthinobacterium ... 456 e-126 ref|YP_001101393.1| 50S ribosomal protein L2 [Herminiimonas arse... 452 e-125 ref|ZP_04579998.1| large subunit ribosomal protein L2 [Oxalobact... 440 e-121 >ref|YP_003773551.1| 50S ribosomal protein L2 [Herbaspirillum seropedicae SmR1] gb|ADJ61643.1| 50S ribosomal subunit L2 protein [Herbaspirillum seropedicae SmR1] Length = 275 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 275/275 (100%), Positives = 275/275 (100%) Query: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ Sbjct: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 Query: 61 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS Sbjct: 61 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120 Query: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE Sbjct: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180 Query: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA Sbjct: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 Query: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK Sbjct: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275 >ref|YP_004751064.1| 50S ribosomal protein L2p (L8e) [Collimonas fungivorans Ter331] gb|AEK60241.1| LSU ribosomal protein L2p (L8e) [Collimonas fungivorans Ter331] Length = 275 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 251/275 (91%), Positives = 266/275 (96%) Query: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 MALVKVKPTSPGRRGMVKVVNPDLYKGRP A+L+EKKSKTAGRNNNGHITTRHIGGGHKQ Sbjct: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPFAALIEKKSKTAGRNNNGHITTRHIGGGHKQ 60 Query: 61 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120 HYR++DF+R KDGIPAKVERIEYDPNRTA+IALLCYADGER YIIA KG++VGDQ++SGS Sbjct: 61 HYRLIDFKRTKDGIPAKVERIEYDPNRTANIALLCYADGERHYIIATKGMAVGDQVMSGS 120 Query: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180 EAPIKSGN LPIRNIPVGT +HCVEMLPGKGAQ+ARTAGA VVLMAREGTYAQ+RLRSGE Sbjct: 121 EAPIKSGNCLPIRNIPVGTILHCVEMLPGKGAQMARTAGAGVVLMAREGTYAQIRLRSGE 180 Query: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 VRRVHIECRAT+GEVGN EH+LRKIGKAGA RWRGVRPTVRGVVMNPVDHPHGGGEGKTA Sbjct: 181 VRRVHIECRATVGEVGNAEHSLRKIGKAGAMRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 Query: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK Sbjct: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275 >ref|YP_001355098.1| 50S ribosomal protein L2 [Janthinobacterium sp. Marseille] sp|A6T3K1|RL2_JANMA RecName: Full=50S ribosomal protein L2 gb|ABR89006.1| large subunit ribosomal protein L2 [Janthinobacterium sp. Marseille] Length = 275 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 250/275 (90%), Positives = 264/275 (96%) Query: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 MALVKVKPTSPGRRGMVKVVN DLYKGRP A L+EKKSKTAGRNNNGHITTRHIGGGHKQ Sbjct: 1 MALVKVKPTSPGRRGMVKVVNADLYKGRPFAGLLEKKSKTAGRNNNGHITTRHIGGGHKQ 60 Query: 61 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120 HYRV+DF+R KDGIPAKVERIEYDPNRTA+IAL+ YADGER+YIIA KG++VGDQL++GS Sbjct: 61 HYRVIDFKRTKDGIPAKVERIEYDPNRTANIALVLYADGERQYIIATKGMAVGDQLMNGS 120 Query: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180 EAPIKSGN LPIRNIPVGT +HCVEMLPGKGAQ+ARTAGA VVLMAREGTYAQVRLRSGE Sbjct: 121 EAPIKSGNCLPIRNIPVGTVMHCVEMLPGKGAQMARTAGAGVVLMAREGTYAQVRLRSGE 180 Query: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 VRRVHIECRAT+GEVGN EH+LRKIGKAGA RWRGVRPTVRGVVMNPVDHPHGGGEGKTA Sbjct: 181 VRRVHIECRATVGEVGNAEHSLRKIGKAGAMRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 Query: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK Sbjct: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275 >ref|YP_001101393.1| 50S ribosomal protein L2 [Herminiimonas arsenicoxydans] sp|A4G9T5|RL2_HERAR RecName: Full=50S ribosomal protein L2 emb|CAL63272.1| 50S ribosomal subunit protein L2 [Herminiimonas arsenicoxydans] Length = 275 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 248/275 (90%), Positives = 262/275 (95%) Query: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 MALVKVKPTSPGRRGMVKVVN DLYKGRP A L+EKKSKTAGRNNNGHITTRHIGGGHKQ Sbjct: 1 MALVKVKPTSPGRRGMVKVVNADLYKGRPFAGLLEKKSKTAGRNNNGHITTRHIGGGHKQ 60 Query: 61 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120 HYRV+DF+R KDGIPAKVERIEYDPNRTA+IAL+ YADGER+YIIA KG++VGDQL++GS Sbjct: 61 HYRVIDFKRTKDGIPAKVERIEYDPNRTANIALVLYADGERQYIIATKGMAVGDQLMNGS 120 Query: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180 EAPIKSGN LPIRNIPVGT +HCVEMLPGKGAQ+ARTAGA VVLMAREG YAQVRLRSGE Sbjct: 121 EAPIKSGNCLPIRNIPVGTIMHCVEMLPGKGAQMARTAGAGVVLMAREGVYAQVRLRSGE 180 Query: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 VRRVHIECRAT+GEVGN EH+LRKIGKAGA RWRGVRPTVRGVVMNPVDHPHGGGEGKTA Sbjct: 181 VRRVHIECRATVGEVGNAEHSLRKIGKAGAMRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 Query: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275 AGRHPVSPWGQQTKGKKTR NKRTTSMIVSRRGKK Sbjct: 241 AGRHPVSPWGQQTKGKKTRRNKRTTSMIVSRRGKK 275 >ref|ZP_04579998.1| large subunit ribosomal protein L2 [Oxalobacter formigenes OXCC13] gb|EEO30971.1| large subunit ribosomal protein L2 [Oxalobacter formigenes OXCC13] Length = 275 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 237/275 (86%), Positives = 265/275 (96%) Query: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 MALVKVKPTSP RRGMVK+VNPDLYKGRPL +L+EKKSK+AGRNNNGHITTRH+GGGHKQ Sbjct: 1 MALVKVKPTSPARRGMVKLVNPDLYKGRPLPALIEKKSKSAGRNNNGHITTRHLGGGHKQ 60 Query: 61 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120 HYRV+DF RNKDGI AKVERIEYDPNRTA+IALLCYADGER+YI+AP+G+SVGDQ+++GS Sbjct: 61 HYRVIDFVRNKDGIVAKVERIEYDPNRTANIALLCYADGERRYILAPRGLSVGDQVMNGS 120 Query: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180 EAPIK+GN LP+RNIPVGTT+HC+EMLPGKGAQ+ARTAGAAVVLMAREG+YAQ+RLRSGE Sbjct: 121 EAPIKAGNCLPLRNIPVGTTLHCIEMLPGKGAQMARTAGAAVVLMAREGSYAQIRLRSGE 180 Query: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 VRRVHIECRAT+GEVGN E NLRK+GKAGATRWRG+RPTVRGVVMNPVDHPHGGGEG+T+ Sbjct: 181 VRRVHIECRATVGEVGNSEQNLRKLGKAGATRWRGIRPTVRGVVMNPVDHPHGGGEGRTS 240 Query: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275 GRHPV+PWGQ+TKG KTRSNKRTTSMIVSRR KK Sbjct: 241 GGRHPVTPWGQKTKGLKTRSNKRTTSMIVSRRNKK 275