BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0331.p         (206 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773549.1| 50S ribosomal protein L4 [Herbaspirillum ser...   396   e-109
ref|YP_001355100.1| large subunit ribosomal protein L4 [Janthino...   370   e-101
ref|YP_004751062.1| 50S ribosomal protein L4p (L1e) [Collimonas ...   369   e-100
ref|YP_001101395.1| 50S ribosomal protein L4 [Herminiimonas arse...   367   e-100
ref|ZP_08272689.1| LSU ribosomal protein L4p (L1e) [Oxalobactera...   345   3e-93

>ref|YP_003773549.1| 50S ribosomal protein L4 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61641.1| 50S ribosomal subunit L4 protein [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  396 bits (1018), Expect = e-109,   Method: Composition-based stats.
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60
           MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT
Sbjct: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120

Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180
           GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA
Sbjct: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180

Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206
           DPVSLVYFKNVLITKPALAKIEELLA
Sbjct: 181 DPVSLVYFKNVLITKPALAKIEELLA 206


>ref|YP_001355100.1| large subunit ribosomal protein L4 [Janthinobacterium sp.
           Marseille]
 sp|A6T3K3|RL4_JANMA RecName: Full=50S ribosomal protein L4
 gb|ABR89135.1| large subunit ribosomal protein L4 [Janthinobacterium sp.
           Marseille]
          Length = 206

 Score =  370 bits (950), Expect = e-101,   Method: Composition-based stats.
 Identities = 186/206 (90%), Positives = 197/206 (95%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60
           MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEV HTT
Sbjct: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKMYRAGVCSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120

Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180
           GRLSV+E  +VEAPKTKLL+QKLKGMG++SVLVITDSLDE LLLASRNLP VL+ EPR A
Sbjct: 121 GRLSVIENLSVEAPKTKLLSQKLKGMGLDSVLVITDSLDENLLLASRNLPNVLICEPRHA 180

Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206
           DPVSLV++K +LITK ALAKIEE+LA
Sbjct: 181 DPVSLVFYKKILITKLALAKIEEMLA 206


>ref|YP_004751062.1| 50S ribosomal protein L4p (L1e) [Collimonas fungivorans Ter331]
 gb|AEK60239.1| LSU ribosomal protein L4p (L1e) [Collimonas fungivorans Ter331]
          Length = 206

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/206 (90%), Positives = 197/206 (95%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60
           MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEV HTT
Sbjct: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAG+CSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGLCSILSQLARE 120

Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180
           GRLSVVE F+VEAPKTKLL+QKLK MG++SVLVITD+L+E LLLASRNLPG LV EPR A
Sbjct: 121 GRLSVVENFSVEAPKTKLLSQKLKTMGLDSVLVITDNLEENLLLASRNLPGFLVCEPRHA 180

Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206
           DPVSLV++K +LITK ALAKIEE+LA
Sbjct: 181 DPVSLVFYKKILITKLALAKIEEMLA 206


>ref|YP_001101395.1| 50S ribosomal protein L4 [Herminiimonas arsenicoxydans]
 sp|A4G9T7|RL4_HERAR RecName: Full=50S ribosomal protein L4
 emb|CAL63274.1| 50S ribosomal subunit protein L4 [Herminiimonas arsenicoxydans]
          Length = 206

 Score =  367 bits (941), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/206 (88%), Positives = 197/206 (95%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60
           MELKLLNDQGQ++SNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEV HTT
Sbjct: 1   MELKLLNDQGQSSSNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKMYRAG+CSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGLCSILSQLARE 120

Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180
           GRLSV+E  +V+APKTKLL+QKLKGMG++SVLVITDSLDE LLLASRNLP VL+ EPR A
Sbjct: 121 GRLSVIESLSVDAPKTKLLSQKLKGMGLDSVLVITDSLDENLLLASRNLPNVLICEPRHA 180

Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206
           DPVSLV++K +LITK ALAKIEE+LA
Sbjct: 181 DPVSLVFYKKILITKLALAKIEEMLA 206


>ref|ZP_08272689.1| LSU ribosomal protein L4p (L1e) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33841.1| LSU ribosomal protein L4p (L1e) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 207

 Score =  345 bits (884), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 173/207 (83%), Positives = 194/207 (93%), Gaps = 1/207 (0%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60
           MELKLLNDQGQAAS+VAAPDTIFGRDYNEALIHQVVVAYQANARSGN KQK+REEV HTT
Sbjct: 1   MELKLLNDQGQAASDVAAPDTIFGRDYNEALIHQVVVAYQANARSGNSKQKNREEVHHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPD+N++HKVNKKMYRAG+CSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDQNYSHKVNKKMYRAGLCSILSQLARE 120

Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMG-MESVLVITDSLDEKLLLASRNLPGVLVVEPRQ 179
           GR+SV+EE ++EAPKTKLL+ KLK MG +ESVL+I D++DE L LASRNLP VL+VEPR 
Sbjct: 121 GRISVIEEISLEAPKTKLLSSKLKEMGLLESVLIIADTIDENLALASRNLPHVLIVEPRH 180

Query: 180 ADPVSLVYFKNVLITKPALAKIEELLA 206
           ADPVSLV++K ++ITK ALAKIEE+LA
Sbjct: 181 ADPVSLVFYKKIVITKAALAKIEEMLA 207