BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0330.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773548.1| 50S ribosomal protein L3 [Herbaspirillum ser... 380 e-103 ref|YP_004751061.1| 50S ribosomal subunit protein L3 [Collimonas... 371 e-101 ref|YP_004028696.1| LSU ribosomal protein L3P [Burkholderia rhiz... 350 1e-94 ref|ZP_08272688.1| LSU ribosomal protein L3p (L3e) [Oxalobactera... 342 2e-92 ref|YP_001355101.1| large subunit ribosomal protein L3 [Janthino... 336 2e-90 >ref|YP_003773548.1| 50S ribosomal protein L3 [Herbaspirillum seropedicae SmR1] gb|ADJ61640.1| 50S ribosomal subunit L3 protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 217/222 (97%), Positives = 220/222 (99%) Query: 30 MEKTMSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQR 89 MEKTMSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQR Sbjct: 1 MEKTMSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQR 60 Query: 90 RASRVVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVS 149 RASRVVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVS Sbjct: 61 RASRVVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVS 120 Query: 150 IGKGYAGTIKRYNFASGRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTCTVQ 209 IGKGYAGTIKRYNF+SGRA+HGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDV TVQ Sbjct: 121 IGKGYAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQ 180 Query: 210 NLEIARIDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 251 NLEIAR+DAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA Sbjct: 181 NLEIARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 222 >ref|YP_004751061.1| 50S ribosomal subunit protein L3 [Collimonas fungivorans Ter331] gb|AEK60238.1| 50S ribosomal subunit protein L3 [Collimonas fungivorans Ter331] Length = 271 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 198/245 (80%), Positives = 218/245 (88%) Query: 7 GFAFAKPIIYGSTNISPAQSQAGMEKTMSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNN 66 GF A +I +P + KTMSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNN Sbjct: 27 GFRLAIALILVVQTSAPPNRRREWRKTMSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNN 86 Query: 67 RVTQIKTPEVDGYSAVQVTFGQRRASRVVKAAAGHFAKAGVEAGTVLKEFRVDASKAAEL 126 RVTQIKTPE DGY+AVQV FG RRASRV KAAAGH+AKAGVEAGT+L+EFR+D++KA+EL Sbjct: 87 RVTQIKTPETDGYTAVQVAFGSRRASRVTKAAAGHYAKAGVEAGTILREFRIDSTKASEL 146 Query: 127 KAGDVVGIGMFEAGQKVDVQGVSIGKGYAGTIKRYNFASGRASHGNSRSHNVPGSIGMAQ 186 KAG+V+ +FE GQKVDVQGVSIGKGYAGTIKR+NFASGRASHGNSRSHNVPGSIGMAQ Sbjct: 147 KAGEVIAASLFEVGQKVDVQGVSIGKGYAGTIKRHNFASGRASHGNSRSHNVPGSIGMAQ 206 Query: 187 DPGRVFPGKRMTGHLGDVTCTVQNLEIARIDAERQLLLVKGAVPGAKNGQVIVSPAVKVK 246 DPGRVFPGKRMTGH+GDVT T QNLEIAR+DAERQLLLVKGAVPGAKNGQV+VSPA+K+K Sbjct: 207 DPGRVFPGKRMTGHMGDVTVTTQNLEIARVDAERQLLLVKGAVPGAKNGQVVVSPAIKIK 266 Query: 247 AKKGA 251 AKKGA Sbjct: 267 AKKGA 271 >ref|YP_004028696.1| LSU ribosomal protein L3P [Burkholderia rhizoxinica HKI 454] emb|CBW74552.1| LSU ribosomal protein L3P [Burkholderia rhizoxinica HKI 454] Length = 247 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 192/231 (83%), Positives = 208/231 (90%) Query: 21 ISPAQSQAGMEKTMSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYS 80 ISP QSQ+GMEKTMSLGLVGRKVGM RIFT DGDSIPVTVLDVS+NRVTQIKT E DGY+ Sbjct: 17 ISPDQSQSGMEKTMSLGLVGRKVGMTRIFTADGDSIPVTVLDVSDNRVTQIKTVETDGYT 76 Query: 81 AVQVTFGQRRASRVVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAG 140 AVQV FG+RRASRV K AGH AKAGV+AG +LKEFR++A KAAEL G VVG+ +FE G Sbjct: 77 AVQVAFGERRASRVTKPLAGHLAKAGVQAGEILKEFRIEADKAAELSPGSVVGVDLFEVG 136 Query: 141 QKVDVQGVSIGKGYAGTIKRYNFASGRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGH 200 QKVDVQGVSIGKGYAGTIKRYNF SGRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGH Sbjct: 137 QKVDVQGVSIGKGYAGTIKRYNFGSGRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGH 196 Query: 201 LGDVTCTVQNLEIARIDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 251 LGDVT T QNLEIARIDA+R+L+LVKGAVPGAK G+V V+PAVK +AKKGA Sbjct: 197 LGDVTATTQNLEIARIDAQRKLILVKGAVPGAKGGKVFVTPAVKARAKKGA 247 >ref|ZP_08272688.1| LSU ribosomal protein L3p (L3e) [Oxalobacteraceae bacterium IMCC9480] gb|EGF33840.1| LSU ribosomal protein L3p (L3e) [Oxalobacteraceae bacterium IMCC9480] Length = 218 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 186/218 (85%), Positives = 205/218 (94%) Query: 34 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 93 MSLGLVGRKVGMMRIFT+DGDSIPVTV+DVSNNRVTQIKTPE DGY++VQV FGQRRASR Sbjct: 1 MSLGLVGRKVGMMRIFTDDGDSIPVTVVDVSNNRVTQIKTPETDGYTSVQVAFGQRRASR 60 Query: 94 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 153 V +A AGH AKAGVEAGTVLKEFR+DA KA+E+KAGD+V +FE GQKVDVQG+SIGKG Sbjct: 61 VNQATAGHHAKAGVEAGTVLKEFRIDAVKASEMKAGDIVAASLFEVGQKVDVQGISIGKG 120 Query: 154 YAGTIKRYNFASGRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTCTVQNLEI 213 YAG IKRYNF+SGRA+HGNSRSHNVPGSIGMAQDPGRVFPGKRMTGH+GDVT T QNLEI Sbjct: 121 YAGVIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHMGDVTVTTQNLEI 180 Query: 214 ARIDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 251 ARIDA+RQLLL+KGAVPGAKNG+V+VSPAVK+KAKKGA Sbjct: 181 ARIDADRQLLLIKGAVPGAKNGKVVVSPAVKIKAKKGA 218 >ref|YP_001355101.1| large subunit ribosomal protein L3 [Janthinobacterium sp. Marseille] sp|A6T3K4|RL3_JANMA RecName: Full=50S ribosomal protein L3 gb|ABR89086.1| large subunit ribosomal protein L3 [Janthinobacterium sp. Marseille] Length = 224 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 190/215 (88%), Positives = 200/215 (93%) Query: 37 GLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASRVVK 96 GL+GRKVGMMRIFT+DGDSIPVTVLDVSNNRVTQIKT EVDGYSAVQV FG RRASRV K Sbjct: 10 GLLGRKVGMMRIFTDDGDSIPVTVLDVSNNRVTQIKTSEVDGYSAVQVAFGSRRASRVNK 69 Query: 97 AAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKGYAG 156 A+AGHFAKAGVEAGTVLKEFRV A+ A+ELK GDV+ +FE GQKVDVQGV+IGKGYAG Sbjct: 70 ASAGHFAKAGVEAGTVLKEFRVAATAASELKVGDVIAASLFEVGQKVDVQGVTIGKGYAG 129 Query: 157 TIKRYNFASGRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTCTVQNLEIARI 216 IKRYNF SGRA+HGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVT T QNLEIARI Sbjct: 130 VIKRYNFGSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTRTTQNLEIARI 189 Query: 217 DAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 251 DA+RQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA Sbjct: 190 DADRQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 224