BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0329.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773547.1| 30S ribosomal protein S10 [Herbaspirillum se...   177   4e-43
ref|YP_001355102.1| small subunit ribosomal protein S10 [Janthin...   172   1e-41
ref|YP_001101397.1| 30S ribosomal protein S10 [Herminiimonas ars...   171   3e-41
ref|YP_004751060.1| 30S ribosomal protein S10p (S20e) [Collimona...   171   3e-41
ref|ZP_08272687.1| SSU ribosomal protein S10p (S20e) [Oxalobacte...   171   4e-41

>ref|YP_003773547.1| 30S ribosomal protein S10 [Herbaspirillum seropedicae SmR1]
 emb|CAM32589.1| 30S ribosomal subunit protein S10 [Herbaspirillum seropedicae]
 gb|ADJ61639.1| 30S ribosomal subunit S10 protein [Herbaspirillum seropedicae SmR1]
          Length = 105

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MSVPSQKIRIRLKAFDYRLIDQSALEIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVN 60
           MSVPSQKIRIRLKAFDYRLIDQSALEIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVN
Sbjct: 1   MSVPSQKIRIRLKAFDYRLIDQSALEIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVN 60

Query: 61  KTSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ 105
           KTSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ
Sbjct: 61  KTSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ 105


>ref|YP_001355102.1| small subunit ribosomal protein S10 [Janthinobacterium sp.
           Marseille]
 gb|ABR88719.1| small subunit ribosomal protein S10 [Janthinobacterium sp.
           Marseille]
          Length = 110

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 101/104 (97%), Positives = 102/104 (98%)

Query: 2   SVPSQKIRIRLKAFDYRLIDQSALEIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVNK 61
           S P+QKIRIRLKAFDYRLIDQSALEIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVNK
Sbjct: 7   SAPNQKIRIRLKAFDYRLIDQSALEIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVNK 66

Query: 62  TSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ 105
           TSRDQFEIRTH RLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ
Sbjct: 67  TSRDQFEIRTHVRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ 110


>ref|YP_001101397.1| 30S ribosomal protein S10 [Herminiimonas arsenicoxydans]
 emb|CAL63276.1| 30S ribosomal subunit protein S10 [Herminiimonas arsenicoxydans]
          Length = 110

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 100/104 (96%), Positives = 102/104 (98%)

Query: 2   SVPSQKIRIRLKAFDYRLIDQSALEIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVNK 61
           S P+QKIRIRLKAFDYRLIDQSALEIV+TAKRTGAVVKGPVPLPTRIQRFDVLRSPHVNK
Sbjct: 7   SAPNQKIRIRLKAFDYRLIDQSALEIVETAKRTGAVVKGPVPLPTRIQRFDVLRSPHVNK 66

Query: 62  TSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ 105
           TSRDQFEIRTH RLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ
Sbjct: 67  TSRDQFEIRTHVRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ 110


>ref|YP_004751060.1| 30S ribosomal protein S10p (S20e) [Collimonas fungivorans Ter331]
 gb|AEK60237.1| SSU ribosomal protein S10p (S20e) [Collimonas fungivorans Ter331]
          Length = 105

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 100/105 (95%), Positives = 102/105 (97%)

Query: 1   MSVPSQKIRIRLKAFDYRLIDQSALEIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVN 60
           MS  +QKIRIRLKAFDY+LIDQSA EIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVN
Sbjct: 1   MSAANQKIRIRLKAFDYKLIDQSAQEIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVN 60

Query: 61  KTSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ 105
           KTSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ
Sbjct: 61  KTSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ 105


>ref|ZP_08272687.1| SSU ribosomal protein S10p (S20e) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33839.1| SSU ribosomal protein S10p (S20e) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 105

 Score =  171 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 98/105 (93%), Positives = 103/105 (98%)

Query: 1   MSVPSQKIRIRLKAFDYRLIDQSALEIVDTAKRTGAVVKGPVPLPTRIQRFDVLRSPHVN 60
           MS P+Q+IRIRLKAFDYRLIDQSALEIV+TAKRTGAVVKGPVPLPTRIQRFDVLRSPHVN
Sbjct: 1   MSSPNQEIRIRLKAFDYRLIDQSALEIVETAKRTGAVVKGPVPLPTRIQRFDVLRSPHVN 60

Query: 61  KTSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ 105
           KTSRDQFEIRTH RL+DIV+PTDKTVDALMKLDLPAGVDVEIKLQ
Sbjct: 61  KTSRDQFEIRTHVRLIDIVNPTDKTVDALMKLDLPAGVDVEIKLQ 105