BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0328.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773532.1| EF-Tu elongation factor protein [Herbaspiril... 777 0.0 ref|YP_001355117.1| elongation factor Tu [Janthinobacterium sp. ... 753 0.0 ref|YP_004358930.1| Translation elongation factor Tu [Burkholder... 736 0.0 ref|YP_003908481.1| translation elongation factor Tu [Burkholder... 733 0.0 ref|YP_547117.1| elongation factor Tu [Polaromonas sp. JS666] >g... 733 0.0 >ref|YP_003773532.1| EF-Tu elongation factor protein [Herbaspirillum seropedicae SmR1] ref|YP_003773546.1| GTPase translation elongation factor TU [Herbaspirillum seropedicae SmR1] emb|CAM32590.1| GTPase translation elongation factor TU (E [Herbaspirillum seropedicae] gb|ADJ61624.1| EF-Tu elongation factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ61638.1| GTPase translation elongation factor TU (EF-Tu) protein [Herbaspirillum seropedicae SmR1] Length = 396 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 396/396 (100%), Positives = 396/396 (100%) Query: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG 60 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG Sbjct: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG 60 Query: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI Sbjct: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 Query: 121 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE Sbjct: 121 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 Query: 181 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK 240 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK Sbjct: 181 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK 240 Query: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS 300 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS Sbjct: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS 300 Query: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS 360 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS Sbjct: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS 360 Query: 361 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKIFD 396 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKIFD Sbjct: 361 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKIFD 396 >ref|YP_001355117.1| elongation factor Tu [Janthinobacterium sp. Marseille] ref|YP_001355103.1| elongation factor Tu [Janthinobacterium sp. Marseille] sp|A6T3K6|EFTU_JANMA RecName: Full=Elongation factor Tu; Short=EF-Tu gb|ABR89570.1| EF-Tu elongation factor [Janthinobacterium sp. Marseille] gb|ABR89588.1| EF-Tu elongation factor [Janthinobacterium sp. Marseille] Length = 396 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 380/396 (95%), Positives = 388/396 (97%) Query: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG 60 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAK YDQID APEEKARG Sbjct: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKGYDQIDNAPEEKARG 60 Query: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 ITINT+HVEYET +RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI Sbjct: 61 ITINTSHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 Query: 121 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE Sbjct: 121 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 Query: 181 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK 240 GDTGPLGEQAI+ALA ALDTYIPTPERAVDG FL+PVEDVFSISGRGTVVTGR+ERGIIK Sbjct: 181 GDTGPLGEQAILALANALDTYIPTPERAVDGAFLLPVEDVFSISGRGTVVTGRIERGIIK 240 Query: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS 300 VGEEIEIVGI DTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDV+RGQVLAKPGS Sbjct: 241 VGEEIEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLAKPGS 300 Query: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS 360 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG+IELPKDKEMVMPGDNVS Sbjct: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPKDKEMVMPGDNVS 360 Query: 361 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKIFD 396 ITV LINPIAMEEGLRFAIREGGRTVGAGVVAKI + Sbjct: 361 ITVMLINPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396 >ref|YP_004358930.1| Translation elongation factor Tu [Burkholderia gladioli BSR3] ref|YP_004358952.1| Translation elongation factor Tu [Burkholderia gladioli BSR3] gb|AEA58974.1| Translation elongation factor Tu [Burkholderia gladioli BSR3] gb|AEA58996.1| Translation elongation factor Tu [Burkholderia gladioli BSR3] Length = 396 Score = 736 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 370/396 (93%), Positives = 383/396 (96%) Query: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG 60 MAK KFERTKPHVNVGTIGHVDHGKTTLTAAIATVLS KFGGEAK YD+IDAAPEEKARG Sbjct: 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSSKFGGEAKKYDEIDAAPEEKARG 60 Query: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 ITINTAH+EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI Sbjct: 61 ITINTAHIEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 Query: 121 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 LL+RQVGVPYIIVFLNK DMVDDAELLELVEMEVRELLSKY+FPGDD PI+KGSAKLALE Sbjct: 121 LLARQVGVPYIIVFLNKCDMVDDAELLELVEMEVRELLSKYDFPGDDTPIIKGSAKLALE 180 Query: 181 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK 240 GD G LGE AIM+LA+ALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGI+K Sbjct: 181 GDKGELGETAIMSLADALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIVK 240 Query: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS 300 VGEEIEIVGI DTQKTTCTGVEMFRKLLDQGQAGDNVG+LLRGTKREDV+RGQVLAKPGS Sbjct: 241 VGEEIEIVGIKDTQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGS 300 Query: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS 360 IKPH HFT E+YVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG+IELPKDKEMVMPGDNVS Sbjct: 301 IKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPKDKEMVMPGDNVS 360 Query: 361 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKIFD 396 ITV+LI PIAMEEGLRFAIREGGRTVGAGVVAKI D Sbjct: 361 ITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKILD 396 >ref|YP_003908481.1| translation elongation factor Tu [Burkholderia sp. CCGE1003] ref|YP_003908494.1| translation elongation factor Tu [Burkholderia sp. CCGE1003] ref|YP_004229757.1| translation elongation factor Tu [Burkholderia sp. CCGE1001] ref|YP_004229770.1| translation elongation factor Tu [Burkholderia sp. CCGE1001] gb|ADN59190.1| translation elongation factor Tu [Burkholderia sp. CCGE1003] gb|ADN59203.1| translation elongation factor Tu [Burkholderia sp. CCGE1003] gb|ADX56697.1| translation elongation factor Tu [Burkholderia sp. CCGE1001] gb|ADX56710.1| translation elongation factor Tu [Burkholderia sp. CCGE1001] Length = 396 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 369/396 (93%), Positives = 382/396 (96%) Query: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG 60 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAI TVL++KFGGEAKAYDQIDAAPEEKARG Sbjct: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLTQKFGGEAKAYDQIDAAPEEKARG 60 Query: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI Sbjct: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 Query: 121 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 LL+RQVGVPYIIVFLNK DMVDDAELLELVEMEVRELLSKY+FPGDD PI+KGSAKLALE Sbjct: 121 LLARQVGVPYIIVFLNKCDMVDDAELLELVEMEVRELLSKYDFPGDDTPIIKGSAKLALE 180 Query: 181 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK 240 GD G LGE AIM LA+ALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERG+IK Sbjct: 181 GDKGELGEVAIMNLADALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGVIK 240 Query: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS 300 VGEEIEIVGI T KTTCTGVEMFRKLLDQGQAGDNVG+LLRGTKREDV+RGQVLAKPGS Sbjct: 241 VGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGS 300 Query: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS 360 I PH HFT E+YVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG+IELPKDKEMVMPGDNVS Sbjct: 301 INPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPKDKEMVMPGDNVS 360 Query: 361 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKIFD 396 ITV+LINPIAMEEGLRFAIREGGRTVGAGVVAKI + Sbjct: 361 ITVKLINPIAMEEGLRFAIREGGRTVGAGVVAKILE 396 >ref|YP_547117.1| elongation factor Tu [Polaromonas sp. JS666] ref|YP_551234.1| elongation factor Tu [Polaromonas sp. JS666] sp|Q123F6|EFTU_POLSJ RecName: Full=Elongation factor Tu; Short=EF-Tu gb|ABE42219.1| translation elongation factor Tu [Polaromonas sp. JS666] gb|ABE46336.1| translation elongation factor 1A (EF-1A/EF-Tu) [Polaromonas sp. JS666] Length = 396 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 368/394 (93%), Positives = 379/394 (96%) Query: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG 60 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAI TVL+ KFGGEAK YDQIDAAPEEKARG Sbjct: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLASKFGGEAKGYDQIDAAPEEKARG 60 Query: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI Sbjct: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 Query: 121 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 LL+RQVGVPYIIVFLNK DMVDDAELLELVEMEVRELL KY+FPGD PI+ GSAKLA+E Sbjct: 121 LLARQVGVPYIIVFLNKCDMVDDAELLELVEMEVRELLDKYDFPGDKTPIIHGSAKLAME 180 Query: 181 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK 240 GD GPLGEQAIM LA+ALDTYIP PERAVDG FLMPVEDVFSISGRGTVVTGRVERG+IK Sbjct: 181 GDKGPLGEQAIMKLADALDTYIPLPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGVIK 240 Query: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS 300 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVG+LLRGTKREDVQRGQVL KPGS Sbjct: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLCKPGS 300 Query: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS 360 IKPH HFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELP+ KEMVMPGDNVS Sbjct: 301 IKPHTHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPEGKEMVMPGDNVS 360 Query: 361 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKI 394 ITV+LINPIAMEEGLRFAIREGG+TVGAGVVAKI Sbjct: 361 ITVKLINPIAMEEGLRFAIREGGKTVGAGVVAKI 394