BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0325.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773543.1| 30s ribosomal protein S12 [Herbaspirillum se...   208   3e-52
ref|YP_001101401.1| 30S ribosomal protein S12 [Herminiimonas ars...   203   5e-51
ref|ZP_08273218.1| SSU ribosomal protein S12p (S23e) [Oxalobacte...   202   1e-50
ref|ZP_04577841.1| small subunit ribosomal protein S12 [Oxalobac...   202   1e-50
ref|YP_004751057.1| 30S ribosomal protein S12p (S23e) [Collimona...   202   1e-50

>ref|YP_003773543.1| 30s ribosomal protein S12 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61635.1| 30s ribosomal subunit S12 protein [Herbaspirillum seropedicae SmR1]
          Length = 127

 Score =  208 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MPTINQLISKPRVRAIVKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60
           MPTINQLISKPRVRAIVKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
Sbjct: 1   MPTINQLISKPRVRAIVKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60

Query: 61  FEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYG 118
           FEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYG
Sbjct: 61  FEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYG 118


>ref|YP_001101401.1| 30S ribosomal protein S12 [Herminiimonas arsenicoxydans]
 ref|YP_001355106.1| 30S ribosomal protein S12 [Janthinobacterium sp. Marseille]
 sp|A4G9U3|RS12_HERAR RecName: Full=30S ribosomal protein S12
 sp|A6T3K9|RS12_JANMA RecName: Full=30S ribosomal protein S12
 emb|CAL63280.1| 30S ribosomal subunit protein S12 [Herminiimonas arsenicoxydans]
 gb|ABR89014.1| small subunit ribosomal protein S12 [Janthinobacterium sp.
           Marseille]
          Length = 127

 Score =  203 bits (517), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 120/127 (94%), Positives = 122/127 (96%)

Query: 1   MPTINQLISKPRVRAIVKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60
           MPTINQLI +PRV A VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
Sbjct: 1   MPTINQLIRQPRVSARVKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60

Query: 61  FEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAK 120
           FEVISYIGGEGHNLQEHSVVL+RGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYG K
Sbjct: 61  FEVISYIGGEGHNLQEHSVVLLRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGTK 120

Query: 121 RAKAAKK 127
           RAKA KK
Sbjct: 121 RAKAGKK 127


>ref|ZP_08273218.1| SSU ribosomal protein S12p (S23e) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33312.1| SSU ribosomal protein S12p (S23e) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 127

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/127 (93%), Positives = 122/127 (96%)

Query: 1   MPTINQLISKPRVRAIVKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60
           MPTINQLI +PRV A VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
Sbjct: 1   MPTINQLIRQPRVSARVKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60

Query: 61  FEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAK 120
           FEVISYIGGEGHNLQEHSVVL+RGGRVKDLPGVRYHMVRGALDTQGVKDRKQ+RSKYG K
Sbjct: 61  FEVISYIGGEGHNLQEHSVVLLRGGRVKDLPGVRYHMVRGALDTQGVKDRKQSRSKYGTK 120

Query: 121 RAKAAKK 127
           RAKA KK
Sbjct: 121 RAKAGKK 127


>ref|ZP_04577841.1| small subunit ribosomal protein S12 [Oxalobacter formigenes HOxBLS]
 gb|EEO28803.1| small subunit ribosomal protein S12 [Oxalobacter formigenes HOxBLS]
          Length = 127

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 117/127 (92%), Positives = 120/127 (94%)

Query: 1   MPTINQLISKPRVRAIVKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60
           MPTINQLI +PRV    KSKSPALEN PQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
Sbjct: 1   MPTINQLIRQPRVTVKTKSKSPALENCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60

Query: 61  FEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAK 120
           FEVISYIGGEGHNLQEHSVVL+RGGRVKDLPGVRYHMVRG+LDTQGVKDRKQARSKYGAK
Sbjct: 61  FEVISYIGGEGHNLQEHSVVLLRGGRVKDLPGVRYHMVRGSLDTQGVKDRKQARSKYGAK 120

Query: 121 RAKAAKK 127
           RAKAA K
Sbjct: 121 RAKAASK 127


>ref|YP_004751057.1| 30S ribosomal protein S12p (S23e) [Collimonas fungivorans Ter331]
 gb|AEK60234.1| SSU ribosomal protein S12p (S23e) [Collimonas fungivorans Ter331]
          Length = 127

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/118 (95%), Positives = 116/118 (98%)

Query: 1   MPTINQLISKPRVRAIVKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60
           MPTINQLI +PRV A+VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
Sbjct: 1   MPTINQLIRQPRVSAVVKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60

Query: 61  FEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYG 118
           FEVISYIGGEGHNLQEHSVVL+RGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYG
Sbjct: 61  FEVISYIGGEGHNLQEHSVVLLRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYG 118