BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0317.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775094.1| amino acid ABC transporter/signal transducti... 436 e-120 ref|YP_002496216.1| family 3 extracellular solute-binding protei... 208 1e-51 ref|YP_003979571.1| extracellular solute-binding protein, family... 197 2e-48 ref|YP_002542705.1| ABC transporter substrate binding protein (a... 196 5e-48 ref|YP_001633064.1| solute-binding protein [Bordetella petrii DS... 194 1e-47 >ref|YP_003775094.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63186.1| ABC-type amino acid transport/signal transduction system, periplasmic component/domain protein [Herbaspirillum seropedicae SmR1] Length = 279 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 215/279 (77%), Positives = 244/279 (87%) Query: 47 MKKISQHLKQLGMGSLLLASAWMIPAAAHADRLGEIQERGSLICATLASNEPLGFPDPQS 106 MKKISQ++K++G GSLL+A A + P A ADRL EIQ RG+L+CATLA+NEPLGFPDPQS Sbjct: 1 MKKISQYIKRMGKGSLLVACAALFPGLAQADRLAEIQARGTLVCATLANNEPLGFPDPQS 60 Query: 107 GQIVGFDVDMCSAIAAKLGVKMRQRSLTVEARLPALIQGEVDLVSGALGYTRERARQIDF 166 Q+VGFDVDMC+A+A +LGV+M Q+S+TVE RLPALI+G+ DLVS ALGYTRERARQIDF Sbjct: 61 RQVVGFDVDMCAAVARRLGVQMEQKSVTVEGRLPALIEGQADLVSAALGYTRERARQIDF 120 Query: 167 TASHYQTPIKLLVYSDSGLNLVSDLEGKRISANRGSTPEQAVRRVLRKATLLTFPETPQT 226 TASHYQ PIKL+V SDSGLNL+SDL KRISANR STPEQAVRRVL KA L TF +TPQ Sbjct: 121 TASHYQNPIKLIVQSDSGLNLISDLADKRISANRSSTPEQAVRRVLPKAMLQTFADTPQA 180 Query: 227 FLAMAQRQVDAMAVAMPSGIRFVNESGGRFRFVEGALAWEPTALGVKKGEHRLLDAVNKA 286 FLA+AQ + D +A++MPSGIRFVNES GRF+FVEGAL+WEPTALGVKKGE RL DAVN A Sbjct: 181 FLALAQGRADGLAISMPSGIRFVNESAGRFKFVEGALSWEPTALGVKKGERRLRDAVNAA 240 Query: 287 LVALEKDGEIDAMWIKWFGPKTKFNIPHDKKLTPISAFR 325 L ALEKDGEIDA+W KWFGPKTKFNIP DKKLTPISAFR Sbjct: 241 LAALEKDGEIDALWTKWFGPKTKFNIPRDKKLTPISAFR 279 >ref|YP_002496216.1| family 3 extracellular solute-binding protein [Methylobacterium nodulans ORS 2060] gb|ACL55913.1| extracellular solute-binding protein family 3 [Methylobacterium nodulans ORS 2060] Length = 267 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 111/250 (44%), Positives = 158/250 (63%) Query: 73 AAHADRLGEIQERGSLICATLASNEPLGFPDPQSGQIVGFDVDMCSAIAAKLGVKMRQRS 132 +A AD+L +I++RG+L+CATL + EP F D + Q G+DVD C AIA LGVK+ + Sbjct: 18 SARADQLDDIKKRGTLVCATLGTTEPFSFQDLTTRQTAGYDVDFCKAIADALGVKLELKL 77 Query: 133 LTVEARLPALIQGEVDLVSGALGYTRERARQIDFTASHYQTPIKLLVYSDSGLNLVSDLE 192 + VEAR+P L QG VD+V+ LGYT ERA QID++ +Y + KLL G SDL Sbjct: 78 VAVEARIPELSQGRVDVVAANLGYTPERAEQIDYSDFYYVSQQKLLARDAEGFKAASDLG 137 Query: 193 GKRISANRGSTPEQAVRRVLRKATLLTFPETPQTFLAMAQRQVDAMAVAMPSGIRFVNES 252 GKR+SA +GST E AV+ + A +TF + P FLAM QR+V A A + ++F +++ Sbjct: 138 GKRVSAIKGSTSELAVKNSIPSAQTVTFQDAPAAFLAMQQRKVAAFAASEIMLVKFRSQA 197 Query: 253 GGRFRFVEGALAWEPTALGVKKGEHRLLDAVNKALVALEKDGEIDAMWIKWFGPKTKFNI 312 G +E +L EP +GV+KGE LL AVNKAL+ LE G+ A++ KW G + +++ Sbjct: 198 GTGLEILEPSLMREPWGIGVRKGEKSLLAAVNKALLDLEASGKAAAIFTKWLGADSPYHL 257 Query: 313 PHDKKLTPIS 322 + K+ P S Sbjct: 258 TREFKIEPRS 267 >ref|YP_003979571.1| extracellular solute-binding protein, family 3 family protein 6 [Achromobacter xylosoxidans A8] gb|ADP16856.1| bacterial extracellular solute-binding protein, family 3 family protein 6 [Achromobacter xylosoxidans A8] Length = 273 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 107/279 (38%), Positives = 171/279 (61%), Gaps = 8/279 (2%) Query: 47 MKKISQHLKQLGMGSLLLASAWMIPAAAHADRLGEIQERGSLICATLASNEPLGFPDPQS 106 MK+ + LG+ +L L A A AD++ +I+ RG LIC TL +++P F D + Sbjct: 1 MKRHTLFAACLGLATLALG------AVAQADQVDDIKARGELICGTLGTSQPFSFQDGTT 54 Query: 107 GQIVGFDVDMCSAIAAKLGVKMRQRSLTVEARLPALIQGEVDLVSGALGYTRERARQIDF 166 Q+VG+DVD+C +A KLGVK+ + L+V AR+P L +G VD+++ LGY+ +RA+QI F Sbjct: 55 RQLVGYDVDVCKLVADKLGVKISYKLLSVAARVPELNEGRVDILAANLGYSPDRAQQIGF 114 Query: 167 TASHYQTPIKLLVYSDSGLNLVSDLEGKRISANRGSTPEQAVRRVLRKATLLTFPETPQT 226 + ++Y +P KLLV DSGL V L G+RI A +GS+ E+ ++R+L K+ ++ + ++ T Sbjct: 115 SHAYYVSPQKLLVRKDSGLETVEALNGRRIGATKGSSSEREIKRILDKSQVIGYGDSSAT 174 Query: 227 FLAMAQRQVDAMAVAMPSGIRFVNES--GGRFRFVEGALAWEPTALGVKKGEHRLLDAVN 284 +LA+ Q++VDA + +R V +S + ++ EP LGV+K E R L+ VN Sbjct: 175 YLALQQKKVDAQFASELVLVRLVLQSPPTAPVSVIAKSVFDEPWGLGVRKSEPRFLETVN 234 Query: 285 KALVALEKDGEIDAMWIKWFGPKTKFNIPHDKKLTPISA 323 +AL E G ++ KWFGP+T + + K+ PI+ Sbjct: 235 QALDEAEASGVAAKLFDKWFGPETPYKLERGFKIGPIAG 273 >ref|YP_002542705.1| ABC transporter substrate binding protein (amino acid) [Agrobacterium vitis S4] gb|ACM39520.1| ABC transporter substrate binding protein (amino acid) [Agrobacterium vitis S4] Length = 272 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 98/251 (39%), Positives = 153/251 (60%), Gaps = 2/251 (0%) Query: 74 AHADRLGEIQERGSLICATLASNEPLGFPDPQSGQIVGFDVDMCSAIAAKLGVKMRQRSL 133 A ADRL +I+ +G L+C T+ + EP FPDP + Q+VG+DVD C AIA KLGVK +++ Sbjct: 21 ALADRLDDIKTKGLLVCGTVPNYEPFSFPDPSTRQLVGYDVDFCEAIAGKLGVKFEMKTM 80 Query: 134 TVEARLPALIQGEVDLVSGALGYTRERARQIDFTASHYQTPIKLLVYSDSGLNLVSDLEG 193 + +AR+P L +G VD+++ LGYT RA QI+++ ++ P ++ V +D G + L G Sbjct: 81 SNDARIPELTEGRVDILTADLGYTLTRAEQINYSYGYFMVPHRVAVRADRGFADLKSLAG 140 Query: 194 KRISANRGSTPEQAVRRVLRKATLLTFPETPQTFLAMAQRQVDAMAVAMPSGIRFVNESG 253 KRI+ +GST E VR+ + ++TF + P FLA+ Q +VD + + R ++++G Sbjct: 141 KRIAVIKGSTSEGFVRKSVENVNVVTFDDAPTGFLALVQGKVDGFSASFLVNARLISKAG 200 Query: 254 --GRFRFVEGALAWEPTALGVKKGEHRLLDAVNKALVALEKDGEIDAMWIKWFGPKTKFN 311 + V+ A+ E +GV+KGE RLL AV+KALV L+ GE + + KW G T + Sbjct: 201 DAAPLKLVDQAVGTETWGIGVRKGEDRLLGAVDKALVDLDNSGEAENIHDKWLGEGTIYK 260 Query: 312 IPHDKKLTPIS 322 K+ I+ Sbjct: 261 QKKSFKIEKIA 271 >ref|YP_001633064.1| solute-binding protein [Bordetella petrii DSM 12804] emb|CAP44797.1| probable solute-binding protein [Bordetella petrii] Length = 276 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 150/246 (60%), Gaps = 5/246 (2%) Query: 70 IPAAAHADRLGEIQERGSLICATLASNEPLGFPDPQSGQIVGFDVDMCSAIAAKLGVKMR 129 + AHAD L I+ERG+L+C TL ++EP F DP++ Q+VG+++D+C AIA LGVK+ Sbjct: 18 VAGVAHADALANIKERGALVCGTLGTSEPFSFQDPKTRQVVGYEIDLCKAIADHLGVKLE 77 Query: 130 QRSLTVEARLPALIQGEVDLVSGALGYTRERARQIDFTASHYQTPIKLLVYSDSG--LNL 187 + ++V AR+P L G VD+V+ LG++ +RA+QID++ HY +P K+L+ D L Sbjct: 78 VKMISVAARIPELAGGRVDVVAANLGWSPDRAKQIDYSYQHYVSPQKILIRRDDAGTLKT 137 Query: 188 VSDLEGKRISANRGSTPEQAVRRVLRKATLLTFPETPQTFLAMAQRQVDAMAVAMPSGIR 247 +DL GKR+SA GS+ E +R++ T +TF + P F+A+ Q++V + ++ Sbjct: 138 NADLAGKRVSAVAGSSSEAGAKRLIPDVTTVTFKDPPTAFMALQQKKVSGFVGSELMLLK 197 Query: 248 F---VNESGGRFRFVEGALAWEPTALGVKKGEHRLLDAVNKALVALEKDGEIDAMWIKWF 304 F S + +E L EP +G+ KGE L VNK L LE G++ ++ +WF Sbjct: 198 FKQDAESSPVKLEIIEDPLFVEPWGIGMAKGEDGLRTEVNKVLSGLEASGKMQVIFDRWF 257 Query: 305 GPKTKF 310 GP TKF Sbjct: 258 GPDTKF 263