BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0316.p (454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775093.1| cytochrome c subunit II protein [Herbaspiril... 663 0.0 ref|YP_004118241.1| gluconate 2-dehydrogenase (acceptor) [Pantoe... 578 e-163 ref|YP_003522398.1| AdhB [Pantoea ananatis LMG 20103] >gi|291154... 576 e-162 dbj|BAK14055.1| gluconate 2-dehydrogenase (acceptor) [Pantoea an... 574 e-161 ref|YP_004118967.1| gluconate 2-dehydrogenase (acceptor) [Pantoe... 436 e-120 >ref|YP_003775093.1| cytochrome c subunit II protein [Herbaspirillum seropedicae SmR1] gb|ADJ63185.1| cytochrome c subunit II protein [Herbaspirillum seropedicae SmR1] Length = 453 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 359/433 (82%), Positives = 384/433 (88%), Gaps = 7/433 (1%) Query: 1 MRKPFKRLMAMLSLLGVVA---LAHAADDAQLIKRGEYLAIAGDCAACHSEKGRAPFSGG 57 MRKPFKRL+A+++LLG LAHAAD+ QLIKRGEYLAIAGDCAACHS+KGRAPFSGG Sbjct: 1 MRKPFKRLLALVALLGAAGMSHLAHAADEGQLIKRGEYLAIAGDCAACHSQKGRAPFSGG 60 Query: 58 HPISSPLGTIYSTNITPSKTHGIGQYTPEQFAAALRRGVRADGSNLYPAMPYTAYARLND 117 HPISSPLGTIYSTNITPSKT GIG YT +QFAAALR+GVRADGS LYPAMPYTAYARLND Sbjct: 61 HPISSPLGTIYSTNITPSKTAGIGSYTRDQFAAALRQGVRADGSQLYPAMPYTAYARLND 120 Query: 118 EDVAALYAYFMQGVQPVDQAPPATALPFPFNIRMSMKAWNWLFLDTKPFEPDPAQSAQWN 177 EDV ALY YFMQGV VDQA PAT LPFPFNIR+SMKAWNWLFLD KPFEPDP+QSAQWN Sbjct: 121 EDVTALYTYFMQGVAAVDQAAPATDLPFPFNIRLSMKAWNWLFLDKKPFEPDPSQSAQWN 180 Query: 178 RGAYLVQGLAHCSTCHTPRNVLMAEQLERRLQGASLGTWYAPDISPAALQAKPAWTRAML 237 RGAYLVQGLAHCSTCHTPRN LMAEQLERRLQG SLGTWYAPDI+PAALQAKPAWTR ML Sbjct: 181 RGAYLVQGLAHCSTCHTPRNFLMAEQLERRLQGGSLGTWYAPDITPAALQAKPAWTREML 240 Query: 238 ADYLASGHAANGATAGGPMLEAIEKSFSRMTREDLDAMATYLLPASPAAAAPASATAPAA 297 ADYLASGHAANGATA GPMLEAIE SFSR+ REDL+AMA+YLLP + A AAPA PA Sbjct: 241 ADYLASGHAANGATAAGPMLEAIEMSFSRLRREDLEAMASYLLPPTAATAAPAVNKPPA- 299 Query: 298 AVPALTPVQGDDTPQALAAMSVGARVYMNNCASCHNTGGQGLNGLPSLQQHPLLRQPNAD 357 LTPVQGDDTPQALAA+S GARVYMNNCASCHNT GQGLNGLP LQ HP+LRQPN D Sbjct: 300 ---GLTPVQGDDTPQALAALSPGARVYMNNCASCHNTAGQGLNGLPPLQSHPVLRQPNGD 356 Query: 358 NVAMAILEGVLPEHGQGMIGFAHTLNDGEIAAVTNYLMQDLGGSKVSISAERVKALRAGG 417 NV MAILEGVLPEHGQGMIGFAHTLND ++AAVTNYL+QD+GGSKVS++ +RV LRAGG Sbjct: 357 NVVMAILEGVLPEHGQGMIGFAHTLNDEQVAAVTNYLLQDIGGSKVSVTTQRVATLRAGG 416 Query: 418 EPSPLLWVARGGM 430 SPLLW+AR GM Sbjct: 417 AASPLLWLARAGM 429 >ref|YP_004118241.1| gluconate 2-dehydrogenase (acceptor) [Pantoea sp. At-9b] gb|ADU71685.1| Gluconate 2-dehydrogenase (acceptor) [Pantoea sp. At-9b] Length = 443 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 298/418 (71%), Positives = 343/418 (82%), Gaps = 9/418 (2%) Query: 30 IKRGEYLAIAGDCAACHSEKGRAPFSGGHPISSPLGTIYSTNITPSKTHGIGQYTPEQFA 89 IKRGEYLAIAGDC ACHSE+G+APFSGGH I+SPLGTI+STNITPSKT GIG Y+ QFA Sbjct: 30 IKRGEYLAIAGDCGACHSEEGKAPFSGGHAIASPLGTIFSTNITPSKTAGIGHYSEAQFA 89 Query: 90 AALRRGVRADGSNLYPAMPYTAYARLNDEDVAALYAYFMQGVQPVDQAPPATALPFPFNI 149 AALR GVR DGS LYPAMPYTAYA+L+D+DVAALYAYFM GVQPVD+ P TALPFPFN+ Sbjct: 90 AALREGVRGDGSQLYPAMPYTAYAKLSDDDVAALYAYFMHGVQPVDEQPQKTALPFPFNL 149 Query: 150 RMSMKAWNWLFLDTKPFEPDPAQSAQWNRGAYLVQGLAHCSTCHTPRNVLMAEQLERRLQ 209 R SM AWNWLFLD + F+PD AQS +WNRGAYLVQGL HCSTCHTPRN LMAEQ LQ Sbjct: 150 RFSMAAWNWLFLDKQRFQPDAAQSDEWNRGAYLVQGLTHCSTCHTPRNFLMAEQSAHNLQ 209 Query: 210 GASLGTWYAPDISPAALQAKPAWTRAMLADYLASGHAANGATAGGPMLEAIEKSFSRMTR 269 GASLGTW+APDI+ A LQ K WTRAMLADYLA+GHA+NGATAGGPMLEAI+KSFSRMT Sbjct: 210 GASLGTWFAPDITAATLQGKSHWTRAMLADYLATGHASNGATAGGPMLEAIDKSFSRMTP 269 Query: 270 EDLDAMATYLLPASPAAAAPASATAPAAAVPALTPVQGDDTPQALAAMSVGARVYMNNCA 329 ED A+ATYLLPA + TA A P LTPVQGDDTPQ A++S GA +Y NNCA Sbjct: 270 EDRQAIATYLLPAE-------TGTAAAVVQPGLTPVQGDDTPQ--ASLSSGAVLYRNNCA 320 Query: 330 SCHNTGGQGLNGLPSLQQHPLLRQPNADNVAMAILEGVLPEHGQGMIGFAHTLNDGEIAA 389 +CHN GQGL+GLP+LQ HP+L +P ADNVAMA+L+GV PE GQGMIGFA +L+D +IA Sbjct: 321 ACHNLQGQGLHGLPALQNHPVLNKPTADNVAMAVLQGVWPEKGQGMIGFAASLSDAQIAD 380 Query: 390 VTNYLMQDLGGSKVSISAERVKALRAGGEPSPLLWVARGGMVLLVLVLLGVALWWRRR 447 +TNY+MQD+G S+V I+A+RVK LRAGG SPL+ +AR GM + V+ +L V WWRR+ Sbjct: 381 ITNYVMQDMGHSQVQITADRVKTLRAGGAASPLMLLARVGMGVAVVAILLVLWWWRRK 438 >ref|YP_003522398.1| AdhB [Pantoea ananatis LMG 20103] gb|ADD79270.1| AdhB [Pantoea ananatis LMG 20103] Length = 987 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 288/450 (64%), Positives = 344/450 (76%), Gaps = 3/450 (0%) Query: 3 KPFKRLM--AMLSLLGVVALAHAADDAQLIKRGEYLAIAGDCAACHSEKGRAPFSGGHPI 60 K RL+ +L L + A A LIKRGEYLA+AGDCAACH+E+G+APFSGGH I Sbjct: 538 KRLSRLLPATLLMLTATQSSAWAESQTDLIKRGEYLAVAGDCAACHTEEGKAPFSGGHAI 597 Query: 61 SSPLGTIYSTNITPSKTHGIGQYTPEQFAAALRRGVRADGSNLYPAMPYTAYARLNDEDV 120 SPLG I+STNITPSKT GIG YT +QFA ALRRG+RADGS+LYPAMPYTAYA+++D DV Sbjct: 598 GSPLGIIFSTNITPSKTAGIGHYTEKQFADALRRGIRADGSHLYPAMPYTAYAKVSDSDV 657 Query: 121 AALYAYFMQGVQPVDQAPPATALPFPFNIRMSMKAWNWLFLDTKPFEPDPAQSAQWNRGA 180 +ALYAYFM GV+ VD P T LPFPFN+R SM AWN+LFLDTKPF+PDP+QSA+WNRG Sbjct: 658 SALYAYFMHGVKAVDSQPEKTDLPFPFNLRFSMAAWNFLFLDTKPFKPDPSQSAEWNRGL 717 Query: 181 YLVQGLAHCSTCHTPRNVLMAEQLERRLQGASLGTWYAPDISPAALQAKPAWTRAMLADY 240 +GL HCSTCHTPRN LMAEQ + LQGASLGTW+APDI+ LQ+ W+R LA Y Sbjct: 718 TWSKGLTHCSTCHTPRNFLMAEQQSKSLQGASLGTWFAPDITANTLQSDDQWSRESLAAY 777 Query: 241 LASGHAANGATAGGPMLEAIEKSFSRMTREDLDAMATYLLPASPAAAAPASATAPAA-AV 299 LASGHA NGATA GPMLEAI+KSFSRMT ED A+ATYL+PA+ A A + Sbjct: 778 LASGHADNGATAAGPMLEAIDKSFSRMTPEDRAAIATYLMPAADQEEGEADADSDVQEPA 837 Query: 300 PALTPVQGDDTPQALAAMSVGARVYMNNCASCHNTGGQGLNGLPSLQQHPLLRQPNADNV 359 LTPV GDDTP L+ ++ G RVY NNCA+CHN GQGLNGLP+L +HP+L +P ADNV Sbjct: 838 SGLTPVTGDDTPDMLSDLTDGERVYRNNCAACHNLEGQGLNGLPALSKHPILEKPTADNV 897 Query: 360 AMAILEGVLPEHGQGMIGFAHTLNDGEIAAVTNYLMQDLGGSKVSISAERVKALRAGGEP 419 AMA+LEGV P +GQGMIGFAHTL++ +IA VTNY+MQD+G S V I+ ERVK+LR GGEP Sbjct: 898 AMAVLEGVWPANGQGMIGFAHTLDNTQIADVTNYVMQDIGNSAVRITPERVKSLRQGGEP 957 Query: 420 SPLLWVARGGMVLLVLVLLGVALWWRRRSK 449 S LL +AR G+ ++VL + + WW RR + Sbjct: 958 SLLLPIARAGLAVVVLTIGLLLFWWWRRRR 987 >dbj|BAK14055.1| gluconate 2-dehydrogenase (acceptor) [Pantoea ananatis AJ13355] Length = 438 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 287/430 (66%), Positives = 341/430 (79%), Gaps = 1/430 (0%) Query: 21 AHAADDAQLIKRGEYLAIAGDCAACHSEKGRAPFSGGHPISSPLGTIYSTNITPSKTHGI 80 A A LIKRGEYLA+AGDCAACH+E+G+APFSGGH I SPLG I+STNITPSKT GI Sbjct: 9 AWAESQTDLIKRGEYLAVAGDCAACHTEEGKAPFSGGHAIGSPLGIIFSTNITPSKTAGI 68 Query: 81 GQYTPEQFAAALRRGVRADGSNLYPAMPYTAYARLNDEDVAALYAYFMQGVQPVDQAPPA 140 G YT +QFA ALRRG+RADGS+LYPAMPYTAYA+++D DV+ALYAYFM GV+ VD P Sbjct: 69 GHYTEKQFADALRRGIRADGSHLYPAMPYTAYAKVSDSDVSALYAYFMHGVKAVDSQPEK 128 Query: 141 TALPFPFNIRMSMKAWNWLFLDTKPFEPDPAQSAQWNRGAYLVQGLAHCSTCHTPRNVLM 200 T LPFPFN+R+SM AWN+LFLDTKPF+PDP+QSA+WNRGAYLV+GL HCSTCHTPRN LM Sbjct: 129 TDLPFPFNLRLSMAAWNFLFLDTKPFKPDPSQSAEWNRGAYLVEGLTHCSTCHTPRNFLM 188 Query: 201 AEQLERRLQGASLGTWYAPDISPAALQAKPAWTRAMLADYLASGHAANGATAGGPMLEAI 260 AEQ + LQGASLGTW+APDI+ LQ+ W+R LA YLASGHA NGATA GPMLEAI Sbjct: 189 AEQQSKSLQGASLGTWFAPDITANTLQSDDQWSRESLAAYLASGHADNGATAAGPMLEAI 248 Query: 261 EKSFSRMTREDLDAMATYLLPASPAAAAPASATAPAA-AVPALTPVQGDDTPQALAAMSV 319 +KSFSRMT ED A+ATYL+PA+ A A + LTPV GDDTP L+ ++ Sbjct: 249 DKSFSRMTPEDRAAIATYLMPAADQEEGEADADSDVQEPASGLTPVTGDDTPDMLSDLTD 308 Query: 320 GARVYMNNCASCHNTGGQGLNGLPSLQQHPLLRQPNADNVAMAILEGVLPEHGQGMIGFA 379 G RVY NNCA+CHN GQGLNGLP+L +HP+L +P ADNVAMA+LEGV P +GQGMIGFA Sbjct: 309 GERVYRNNCAACHNLEGQGLNGLPALSKHPILEKPTADNVAMAVLEGVWPANGQGMIGFA 368 Query: 380 HTLNDGEIAAVTNYLMQDLGGSKVSISAERVKALRAGGEPSPLLWVARGGMVLLVLVLLG 439 HTL++ +IA VTNY+MQD+G S V I+ ERVK+LR GGEPS LL +AR G+ ++VL + Sbjct: 369 HTLDNTQIADVTNYVMQDIGNSAVRITPERVKSLRQGGEPSLLLPIARAGLAVVVLTIGL 428 Query: 440 VALWWRRRSK 449 + WW RR + Sbjct: 429 LLFWWWRRRR 438 >ref|YP_004118967.1| gluconate 2-dehydrogenase (acceptor) [Pantoea sp. At-9b] gb|ADU72411.1| Gluconate 2-dehydrogenase (acceptor) [Pantoea sp. At-9b] Length = 449 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 224/406 (55%), Positives = 284/406 (69%), Gaps = 7/406 (1%) Query: 27 AQLIKRGEYLAIAGDCAACHSEKGRAPFSGGHPISSPLGTIYSTNITPSKTHGIGQYTPE 86 A LI +G+YLA AGDC ACH+ G PF+GG + +PLG+IYSTNITPSKT GIG Y+ Sbjct: 30 AALIAKGQYLATAGDCGACHTAPGGKPFAGGLSLQTPLGSIYSTNITPSKTAGIGDYSLT 89 Query: 87 QFAAALRRGVRADGSNLYPAMPYTAYARLNDEDVAALYAYFMQGVQPVDQAPPATALPFP 146 F A+R GVR DG+NLYPAMPYT+Y+++ DED+ ALYAYFMQGVQPVD P T LPFP Sbjct: 90 DFEKAVRHGVRKDGANLYPAMPYTSYSKVTDEDMQALYAYFMQGVQPVDDKGPQTDLPFP 149 Query: 147 FNIRMSMKAWNWLFLDTKPFEPDPAQSAQWNRGAYLVQGLAHCSTCHTPRNVLMAEQLER 206 FNIR+SM WN LF D KPF PD ++SA+WNRGAYLV+GLAHCSTCHTPRN LMAE+ + Sbjct: 150 FNIRLSMAGWNLLFADDKPFTPDNSKSAEWNRGAYLVEGLAHCSTCHTPRNALMAEESGK 209 Query: 207 RLQGASLGTWYAPDISPAALQAKPAWTRAMLADYLASGHAANGATAGGPMLEAIEKSFSR 266 L GASLGTW+AP+I+ W+ L+ YL +G++ G+ AGGPMLEAI KSFS Sbjct: 210 ALAGASLGTWFAPNITSDVHAGIGGWSDQALSAYLTTGNSGEGSQAGGPMLEAINKSFSH 269 Query: 267 MTREDLDAMATYLLPASPAAAAPASATAPAAAVPALTPVQGDDTPQALAA-MSVGARVYM 325 +T D+ A+ YL PA P A LTP + + L+ S GA +Y Sbjct: 270 LTPTDIQAITAYL------RDVPAQQINPTATKTQLTPAKQVNELDLLSGNASEGANLYN 323 Query: 326 NNCASCHNTGGQGLNGLPSLQQHPLLRQPNADNVAMAILEGVLPEHGQGMIGFAHTLNDG 385 ++CASCH G+G NGLP+L + LR+P ADN MA+L+G++P+HGQ M F+ +ND Sbjct: 324 SHCASCHQLSGEGRNGLPALAGNAALRRPVADNAVMAVLDGLVPDHGQAMPAFSRHMNDQ 383 Query: 386 EIAAVTNYLMQDLGGSKVSISAERVKALRAGGEPSPLLWVARGGMV 431 ++A + NYL + G ++V + ERVK LRAGG+PSPLL VA+GGMV Sbjct: 384 QVATLVNYLFHNFGDARVQTTPERVKELRAGGKPSPLLAVAKGGMV 429