BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0313.p         (65 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775090.1| branched-chain amino acid ABC transporter AT...   125   2e-27
ref|YP_003775087.1| branched-chain amino acid ABC transporter AT...    77   9e-13
ref|ZP_03543388.1| ABC transporter related [Comamonas testostero...    63   2e-08
ref|YP_003979345.1| high-affinity branched-chain amino acid tran...    61   4e-08
ref|ZP_06687975.1| branched-chain amino acid ABC superfamily ATP...    61   4e-08

>ref|YP_003775090.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum
          seropedicae SmR1]
 gb|ADJ63182.1| ABC-type branched-chain amino acid transport system, ATPase
          component protein [Herbaspirillum seropedicae SmR1]
          Length = 65

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MGLSAVRFRPIGLALWSKPRLPPDEPTLGVVDRGYVLENGHVVISDTGANLLANSDVRKA 60
          MGLSAVRFRPIGLALWSKPRLPPDEPTLGVVDRGYVLENGHVVISDTGANLLANSDVRKA
Sbjct: 1  MGLSAVRFRPIGLALWSKPRLPPDEPTLGVVDRGYVLENGHVVISDTGANLLANSDVRKA 60

Query: 61 YLGHG 65
          YLGHG
Sbjct: 61 YLGHG 65


>ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63179.1| ABC-type branched-chain amino acid transport system, ATPase
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/91 (53%), Positives = 50/91 (54%), Gaps = 36/91 (39%)

Query: 11  IGLALWSKPRLPP-DEPTLG-----------------------------------VVDRG 34
           IG AL SKPRL   DEPTLG                                   V DRG
Sbjct: 145 IGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLVEQNANKALGVADRG 204

Query: 35  YVLENGHVVISDTGANLLANSDVRKAYLGHG 65
           YVLENGHVV+SDTGANLLANSDVRKAYLGHG
Sbjct: 205 YVLENGHVVMSDTGANLLANSDVRKAYLGHG 235


>ref|ZP_03543388.1| ABC transporter related [Comamonas testosteroni KF-1]
 gb|EED67674.1| ABC transporter related [Comamonas testosteroni KF-1]
          Length = 237

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 44/90 (48%), Gaps = 36/90 (40%)

Query: 11  IGLALWSKPRLPP-DEPTLG-----------------------------------VVDRG 34
           IG AL SKPRL   DEPTLG                                   + DRG
Sbjct: 148 IGRALMSKPRLLLLDEPTLGLAPLIIAQIFEIIQTIRAAGVTVFLVEQNANRALQIADRG 207

Query: 35  YVLENGHVVISDTGANLLANSDVRKAYLGH 64
           YVLE G VV+ D+G NLL+N DVRKAYLGH
Sbjct: 208 YVLETGKVVLEDSGVNLLSNDDVRKAYLGH 237


>ref|YP_003979345.1| high-affinity branched-chain amino acid transport ATP-binding
           protein BRAG 2 [Achromobacter xylosoxidans A8]
 gb|ADP16630.1| high-affinity branched-chain amino acid transport ATP-binding
           protein BRAG 2 [Achromobacter xylosoxidans A8]
          Length = 233

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/36 (80%), Positives = 30/36 (83%)

Query: 28  LGVVDRGYVLENGHVVISDTGANLLANSDVRKAYLG 63
           LGV DRGYVLENG VV+ DTGANLL N  VRKAYLG
Sbjct: 197 LGVADRGYVLENGRVVLQDTGANLLVNDQVRKAYLG 232


>ref|ZP_06687975.1| branched-chain amino acid ABC superfamily ATP binding cassette
           transporter, ABC protein [Achromobacter piechaudii ATCC
           43553]
 gb|EFF75076.1| branched-chain amino acid ABC superfamily ATP binding cassette
           transporter, ABC protein [Achromobacter piechaudii ATCC
           43553]
          Length = 234

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/36 (80%), Positives = 30/36 (83%)

Query: 28  LGVVDRGYVLENGHVVISDTGANLLANSDVRKAYLG 63
           LGV DRGYVLENG VV+ DTGANLL N  VRKAYLG
Sbjct: 198 LGVADRGYVLENGRVVLQDTGANLLVNDQVRKAYLG 233