BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0312.p (498 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775089.1| transmembrane protein [Herbaspirillum serope... 992 0.0 ref|YP_003773715.1| transmembrane protein [Herbaspirillum serope... 595 e-168 ref|YP_003773716.1| transmembrane protein [Herbaspirillum serope... 579 e-163 ref|NP_521339.1| hypothetical protein RSc3218 [Ralstonia solanac... 427 e-117 ref|YP_003750352.1| hypothetical protein RPSI07_mp1407 [Ralstoni... 425 e-116 >ref|YP_003775089.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63181.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 497 Score = 992 bits (2565), Expect = 0.0, Method: Composition-based stats. Identities = 494/498 (99%), Positives = 495/498 (99%), Gaps = 1/498 (0%) Query: 1 MKFLVATRSRRVALSFFAAAIAMFLNLFWMYHLDQIHPRFWSTEELMSRLLGMPALLMIA 60 MKFLVATRSRRVALSFFAAAIAMFLNLFWMYHLDQIHPRFWSTEELMSRLLGMPALLMIA Sbjct: 1 MKFLVATRSRRVALSFFAAAIAMFLNLFWMYHLDQIHPRFWSTEELMSRLLGMPALLMIA 60 Query: 61 VLSLTTACSWSPLQGASGKSMTGQPDEPARPFKAQVVGVQWLNPLMRRDYTTEWQLLWVL 120 VLSLTTACSWSPLQGASGKSMTGQPDEPARPFKAQVVGVQWLNPLMRRDYTTEWQLLWVL Sbjct: 61 VLSLTTACSWSPLQGASGKSMTGQPDEPARPFKAQVVGVQWLNPLMRRDYTTEWQLLWVL 120 Query: 121 GLAKPNKNDDELKRDPKVFSTVQPISPIKINWKRTVMYPDGTSAFPYYLERYMEKILQPI 180 GLAKPNKNDDELKRDPKVFSTVQPISPIKINWKRTVMYPDGTSAFPYYLERYMEKILQPI Sbjct: 121 GLAKPNKNDDELKRDPKVFSTVQPISPIKINWKRTVMYPDGTSAFPYYLERYMEKILQPI 180 Query: 181 GRRYAMHGGYFYTIQPRDRKRWRELHGIHIEFAIPETPVLPPELAAEIIRKTMNAEFEFY 240 GRRYAMHGGYFYTIQPRDRKRWRELHGIHIEFAIPETPVLPPELAAEIIRKTMNAEFEFY Sbjct: 181 GRRYAMHGGYFYTIQPRDRKRWRELHGIHIEFAIPETPVLPPELAAEIIRKTMNAEFEFY 240 Query: 241 DAELSTGNIPADVSITTGGASAGFTSLSAALDYLQANPEKSVWVMNWDSPQFPDYGLMTE 300 DAELSTGNIPADVSITTGGASAGFTSLSAALDYLQANPEKSVWVMNWDSPQFPDYGLMTE Sbjct: 241 DAELSTGNIPADVSITTGGASAGFTSLSAALDYLQANPEKSVWVMNWDSPQFPDYGLMTE 300 Query: 301 NCTLLVLAGPHFDTQREPLAWIARPAVRQLADGEVPEGMSRRGHYTWNAAIRSAADQAEV 360 NCTLLVLAGPHFDTQREPLAWIARPAVRQLADGEVPEGMSRRGH WNAAIRSAADQAEV Sbjct: 301 NCTLLVLAGPHFDTQREPLAWIARPAVRQLADGEVPEGMSRRGH-AWNAAIRSAADQAEV 359 Query: 361 KPADIGYVIHDAGHGNDTSGKRIGTLGEALTVTMPELDFVQQTFNTPKLLGDMRAGTAVT 420 KPADIGYVIHDAGHGNDTSGKRIGTLGEALT+TMPELDFVQQTFNTPKLLGDMRAGTAVT Sbjct: 360 KPADIGYVIHDAGHGNDTSGKRIGTLGEALTLTMPELDFVQQTFNTPKLLGDMRAGTAVT 419 Query: 421 NLALAIDWSHQKGKPVLVAGTTEEDKATAVVVTPPSRARVFNPDKDWFRARGEGNAYLPW 480 NLALAI WSHQKGKPVLVAGTTEEDKATAVVVTPPSRARVFNPDKDWFRARGEGNAYLPW Sbjct: 420 NLALAIAWSHQKGKPVLVAGTTEEDKATAVVVTPPSRARVFNPDKDWFRARGEGNAYLPW 479 Query: 481 WGLRRKVDWATVWQGFSD 498 WGLRRKVDWATVWQGFSD Sbjct: 480 WGLRRKVDWATVWQGFSD 497 >ref|YP_003773715.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61807.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 496 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 288/495 (58%), Positives = 372/495 (75%), Gaps = 14/495 (2%) Query: 10 RRVALSFFAAAIAMFLNLFWMYHLDQIHPRFWSTEELMSRLLGMPALLMIAVLSLTTACS 69 R++ L + F++L W+Y LDQ PR W T ++M+RL+ + LS+ Sbjct: 10 RQIVLFVLVLIVTCFISLGWIYFLDQKQPRHWETGDVMNRLIYL-------ALSIAALVV 62 Query: 70 WSPLQGASGKSMTGQPDEPA------RPFKAQVVGVQWLNPLMRRDYTTEWQLLWVLGLA 123 + S + +E F+ QVVGVQWLNPLMRRDY EWQLLW LG+A Sbjct: 63 LTVTAVVHRSSRAVEVNEAPLVAGNEERFQVQVVGVQWLNPLMRRDYPAEWQLLWTLGIA 122 Query: 124 KPNKNDDELKRDPKVFSTVQPISPIKINWKRTVMYPDGTSAFPYYLERYMEKILQPIGRR 183 KPNK+DDE++RDP F++VQPI+P+ N++R ++ DG+S FP +L Y+ KI++PIGR+ Sbjct: 123 KPNKDDDEVQRDPATFTSVQPIAPLSFNFRREKIFEDGSSVFPGFLSDYVRKIIKPIGRQ 182 Query: 184 YAMHGGYFYTIQPRDRKRWRELHGIHIEFAIPETPVLPPELAAEIIRKTMNAEFEFYDAE 243 YA++G YFYTIQP +RKRWREL+GI +EFAIP+ P+L + A E RK +AEF FYD E Sbjct: 183 YALNGSYFYTIQPENRKRWRELNGIRVEFAIPDVPMLTSDNATERTRKAFDAEFVFYDPE 242 Query: 244 LSTGNIPADVSITTGGASAGFTSLSAALDYLQANPEKSVWVMNWDSPQFPDYGLMTENCT 303 LST NIPADV+IT GGASAGFTSLSA +DYL+A+P+K+VWVMN D+P+FP+YG ++ENCT Sbjct: 243 LSTANIPADVNITRGGASAGFTSLSAGMDYLEAHPDKTVWVMNMDAPEFPEYGRISENCT 302 Query: 304 LLVLAGPHFDTQREPLAWIARPAVRQLADGEVPEGMSRRGHYTWNAAIRSAADQAEVKPA 363 LL+LAGP F+T+REPLAWIARPAVR D EG SR W +AI+SAA+QA + P+ Sbjct: 303 LLILAGPKFNTEREPLAWIARPAVRSTEDFAPAEGESRTA-LAWKSAIQSAAEQANISPS 361 Query: 364 DIGYVIHDAGHGNDTSGKRIGTLGEALTVTMPELDFVQQTFNTPKLLGDMRAGTAVTNLA 423 DI YVIHDAG G++ +G+R+GTL +A+T ++PELD +Q FNT +LLGDMRAGTA+TN+A Sbjct: 362 DIRYVIHDAGKGSEEAGRRMGTLAQAMTQSLPELDVFKQAFNTSQLLGDMRAGTAITNVA 421 Query: 424 LAIDWSHQKGKPVLVAGTTEEDKATAVVVTPPSRARVFNPDKDWFRARGEGNAYLPWWGL 483 LAI W+H KGKPV+VAGTTE D+ATAVVVTPP RARVF+P+K+WFRARGEG AYLPWWGL Sbjct: 422 LAIAWAHHKGKPVMVAGTTETDRATAVVVTPPDRARVFDPEKNWFRARGEGYAYLPWWGL 481 Query: 484 RRKVDWATVWQGFSD 498 R+ +DW T QG+SD Sbjct: 482 RKDLDWTTYMQGYSD 496 >ref|YP_003773716.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61808.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 450 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 269/407 (66%), Positives = 339/407 (83%), Gaps = 1/407 (0%) Query: 92 FKAQVVGVQWLNPLMRRDYTTEWQLLWVLGLAKPNKNDDELKRDPKVFSTVQPISPIKIN 151 F+ QVVGVQWLNPLMRRDY TEWQLLW LG+AKPNK+DDE++RDP+ F+TVQ I+P+ N Sbjct: 45 FQVQVVGVQWLNPLMRRDYPTEWQLLWTLGIAKPNKDDDEVRRDPETFTTVQKIAPLTFN 104 Query: 152 WKRTVMYPDGTSAFPYYLERYMEKILQPIGRRYAMHGGYFYTIQPRDRKRWRELHGIHIE 211 +++ +++ DG+S FP +L Y+E IL+PIGR+YA++ YFYTIQP +RK WRELHGI +E Sbjct: 105 FRKKIVFSDGSSVFPGFLSDYVEAILKPIGRQYALNSSYFYTIQPENRKSWRELHGIRVE 164 Query: 212 FAIPETPVLPPELAAEIIRKTMNAEFEFYDAELSTGNIPADVSITTGGASAGFTSLSAAL 271 FAIP+ P+L + AAE R+ N EFEF++ E+ST NIPADV+IT GGASAGFTSLSA + Sbjct: 165 FAIPDVPMLTSDNAAERTREAFNGEFEFHNPEISTENIPADVNITRGGASAGFTSLSAGM 224 Query: 272 DYLQANPEKSVWVMNWDSPQFPDYGLMTENCTLLVLAGPHFDTQREPLAWIARPAVRQLA 331 DYL+A+P+K+VWVMN D+P+FPDYG ++ENCTLL+LAGP F+T+REPLAWIARPAVR Sbjct: 225 DYLEAHPDKTVWVMNMDAPEFPDYGRISENCTLLILAGPKFNTEREPLAWIARPAVRSTE 284 Query: 332 DGEVPEGMSRRGHYTWNAAIRSAADQAEVKPADIGYVIHDAGHGNDTSGKRIGTLGEALT 391 D EG SR W +AI+SAA+QA + P+DI YVIHDAG G++ +G+RIGTL +A+T Sbjct: 285 DFAPAEGESRTA-LAWKSAIQSAAEQANISPSDIRYVIHDAGKGSEEAGRRIGTLAQAMT 343 Query: 392 VTMPELDFVQQTFNTPKLLGDMRAGTAVTNLALAIDWSHQKGKPVLVAGTTEEDKATAVV 451 ++PELD +Q FNTP+LLGDMRAGTA+TN+ALAI W+H KGKPV+VAGTTE D+ATAVV Sbjct: 344 QSLPELDMFKQAFNTPQLLGDMRAGTAITNVALAIAWAHHKGKPVMVAGTTETDRATAVV 403 Query: 452 VTPPSRARVFNPDKDWFRARGEGNAYLPWWGLRRKVDWATVWQGFSD 498 VTPP RARVF+P+K+WFRARGEG AYLPWWGLR+ +DW T QG+SD Sbjct: 404 VTPPDRARVFDPEKNWFRARGEGYAYLPWWGLRKDLDWTTYMQGYSD 450 >ref|NP_521339.1| hypothetical protein RSc3218 [Ralstonia solanacearum GMI1000] emb|CAD17006.1| hypothetical virulence factor, pectin lyase fold; transmembrane protein [Ralstonia solanacearum GMI1000] Length = 493 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 248/503 (49%), Positives = 318/503 (63%), Gaps = 17/503 (3%) Query: 1 MKFLVATRSRRVALSFFAAAIAMFLNLFWMYHLDQIHPRFWSTEELMSRLLGMPALLMIA 60 MK L+ T RR+ ++F ++ L L WM H +Q R +S EELM RL+ MPALL A Sbjct: 1 MKVLITTWPRRLGVAFGILVLSTGLMLAWMVHAEQTSARIYSDEELMKRLVIMPALLAFA 60 Query: 61 VLSLTTA-CSWSPLQGASGKSMTGQPDEPARPFKAQVVGVQWLNPLMRRDYTTEWQLLWV 119 V L+TA S L EPA+PF AQVVG++WLNPL RRDY TEWQLLW Sbjct: 61 VFLLSTAFMQRSALAATPKAEAAPAAVEPAKPFMAQVVGLEWLNPLQRRDYPTEWQLLWT 120 Query: 120 LGLAKPNKNDDELKRDPKVFSTVQPISPIKI-NWKRTVMYPDGTSAFPYYLERYMEKILQ 178 LGL KPNKNDD ++ DPK F+T+QPI+ I NW G +F Y E+Y+ K++ Sbjct: 121 LGLVKPNKNDDMVRTDPKKFTTLQPIAGIAFGNW--------GKESFDGYYEKYITKLMV 172 Query: 179 PIGRRYAMHGGYFYTIQPRDRKRWRELHGIHIEFAIPETPVLPPELAAEIIRKTMNAEFE 238 + +RY M+ YFYT+ +DRK WREL G+H+E A+P + E ++K M + FE Sbjct: 173 LLRQRYLMNPSYFYTVASKDRKDWRELAGVHVELAVPAKRLDLVE-TQTYLQKEMVSFFE 231 Query: 239 FYD---AELSTGNIPADVSITTGGASAGFTSLSAALDYLQANPEKSVWVMNWDSPQFP-D 294 + +L + + P DV IT GGA+AGFTSL+AALDYLQA+P++SVWVMNWD+P FP + Sbjct: 232 IGNRSAPDLWSRDTPPDVRITQGGANAGFTSLNAALDYLQAHPQESVWVMNWDAPSFPPN 291 Query: 295 YGLMTENCTLLVLAGPHFDTQREPLAWIARPAVRQLADGEVPEGMSRRGHYTWNAAIRSA 354 + EN +L LAGP T+R+PLAWI R A + E G +R W A I +A Sbjct: 292 DEQLNENLAVLFLAGPDLKTERDPLAWIGRAATGNINGHERKAGTTRVIQ-AWKATIEAA 350 Query: 355 ADQAEVKPADIGYVIHDAGHGNDTSGKRIGTLGEALTVTMPELDFVQQTFNTPKLLGDMR 414 A A DI Y IHDAG G+D + +R+ L LT TM E D+ +QTFNT LLGDM Sbjct: 351 AKNAGHGIEDIHYTIHDAGKGSDAASERLAGLSRTLTETMLEFDYQKQTFNTAGLLGDMG 410 Query: 415 AGTAVTNLALAIDWSHQKGKPVLVAGTTEEDKATAVVVTPPSRARVFNPDKDWFRARGEG 474 AG+A+TN+ALAI ++ G VLVAGTT+ + TAVVV PPS+ +PDKDWFRARGE Sbjct: 411 AGSALTNMALAIARANHLGGSVLVAGTTDPEHPTAVVVAPPSKLTPIDPDKDWFRARGEN 470 Query: 475 NAYLPWWGLRRKVDWATVWQGFS 497 NAYLPWWG R + TV QG+S Sbjct: 471 NAYLPWWGHRHGESYGTV-QGYS 492 >ref|YP_003750352.1| hypothetical protein RPSI07_mp1407 [Ralstonia solanacearum PSI07] emb|CBJ35732.1| conserved exported protein of unknown function [Ralstonia solanacearum PSI07] Length = 493 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 245/503 (48%), Positives = 313/503 (62%), Gaps = 17/503 (3%) Query: 1 MKFLVATRSRRVALSFFAAAIAMFLNLFWMYHLDQIHPRFWSTEELMSRLLGMPALLMIA 60 M+ L+AT RR+ L+ ++ L L WM H Q PR +S ELM RL+ MPALL Sbjct: 1 MRVLMATWPRRLGLALGILVLSAGLMLAWMVHDAQTTPRIYSDGELMKRLVIMPALLAGI 60 Query: 61 VLSLTTACSWSPLQGASGKSMTGQPDEPA-RPFKAQVVGVQWLNPLMRRDYTTEWQLLWV 119 V L TA P Q A+ ++ A +PF AQVVG++WLNPL RRDY TEWQLLW Sbjct: 61 VFLLGTALMQRPAQAATPRAEAAPAAAEAAKPFIAQVVGLEWLNPLQRRDYPTEWQLLWT 120 Query: 120 LGLAKPNKNDDELKRDPKVFSTVQPISPIKI-NWKRTVMYPDGTSAFPYYLERYMEKILQ 178 LGL KPNKNDD ++ P+ +S +QPI+ + NW G Y +Y+ +++ Sbjct: 121 LGLVKPNKNDDMVRTKPEKYSKLQPITAVAFGNW--------GKETIRGYYRKYVTELMV 172 Query: 179 PIGRRYAMHGGYFYTIQPRDRKRWRELHGIHIEFAIPETPVLPPELAAEIIRKTMNAEFE 238 + RYAM+ YFYT+ DRK WREL GIH+E A+P + + P E +RK M F Sbjct: 173 LLADRYAMNSKYFYTVASEDRKEWRELAGIHVELAVPASRLDPVE-TETYLRKEMIGAFS 231 Query: 239 FYDA---ELSTGNIPADVSITTGGASAGFTSLSAALDYLQANPEKSVWVMNWDSPQFP-D 294 + L + + P DV +T GGA+AGFTSL+AALDYLQA+P++SVWVMNWD+P FP + Sbjct: 232 IGNKNFKSLWSRDTPPDVRVTQGGANAGFTSLNAALDYLQAHPQESVWVMNWDAPSFPPN 291 Query: 295 YGLMTENCTLLVLAGPHFDTQREPLAWIARPAVRQLADGEVPEGMSRRGHYTWNAAIRSA 354 + EN LL LAGP T+REPLAWI R A + D E G +R W A I +A Sbjct: 292 DEQLNENMVLLFLAGPELKTEREPLAWIGRAATGNINDYERKAGTTRVIQ-AWKATIEAA 350 Query: 355 ADQAEVKPADIGYVIHDAGHGNDTSGKRIGTLGEALTVTMPELDFVQQTFNTPKLLGDMR 414 A + ADI Y IHDAG G+D + +R+ L LT TM E D+ +QTFNT LLGDM Sbjct: 351 AKNSGHSIADIQYTIHDAGKGSDAASERLAGLSRTLTETMLEFDYQKQTFNTAGLLGDMG 410 Query: 415 AGTAVTNLALAIDWSHQKGKPVLVAGTTEEDKATAVVVTPPSRARVFNPDKDWFRARGEG 474 AG+A+TN+ALAI ++ G VLVAGTT + TAVVVTPPS+ +PDKDWFRARGE Sbjct: 411 AGSALTNVALAIARANHLGGSVLVAGTTNPEHPTAVVVTPPSKLTPIDPDKDWFRARGEN 470 Query: 475 NAYLPWWGLRRKVDWATVWQGFS 497 NAYLPWWG R ++ TV QG+S Sbjct: 471 NAYLPWWGRRHGENYGTV-QGYS 492