BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0308.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775085.1| branched-chain amino acid ABC transporter pe... 678 0.0 ref|YP_776315.1| leucine/isoleucine/valine transporter permease ... 556 e-156 ref|ZP_02888208.1| inner-membrane translocator [Burkholderia amb... 555 e-156 ref|YP_001778887.1| leucine/isoleucine/valine transporter permea... 555 e-156 ref|YP_623218.1| leucine/isoleucine/valine transporter permease ... 555 e-156 >ref|YP_003775085.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63177.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 408 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 390/408 (95%), Positives = 403/408 (98%) Query: 1 MPETFKNAVAAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLARPAL 60 MPETFKNAV AALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLA+P L Sbjct: 1 MPETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVL 60 Query: 61 ARTSAGIKLPALPRMQPGQQRAAVLILLMAALVWPFFGSRGYVDVMTLALIYVVLGLGLN 120 +R+SAGIKLPALPRMQP QQRAAV+ILLMAALVWPFFGSRGYVDVMTLALIYVVLGLGLN Sbjct: 61 SRSSAGIKLPALPRMQPRQQRAAVMILLMAALVWPFFGSRGYVDVMTLALIYVVLGLGLN 120 Query: 121 IVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAALFGFLLGFPVLRL 180 IVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGL+FWECVPL+AAA+ALFGFLLGFPVLRL Sbjct: 121 IVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLTFWECVPLAAAASALFGFLLGFPVLRL 180 Query: 181 RGDYLAIVTLGFGEIIRLLLNNMTSLTGGPDGISGIPKPTVFGVVMARNPLTEDGTTFHQ 240 RGDYLAIVTLGFGEIIRLLLNNMTS+TGGPDG+SGIPKPTVFG+VMARNP+TE GTTFHQ Sbjct: 181 RGDYLAIVTLGFGEIIRLLLNNMTSITGGPDGVSGIPKPTVFGLVMARNPVTEGGTTFHQ 240 Query: 241 LLGLTYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLGINPT 300 L GL+YQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLGINPT Sbjct: 241 LFGLSYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLGINPT 300 Query: 301 RVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGVILAA 360 +VKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGVILAA Sbjct: 301 KVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGVILAA 360 Query: 361 ILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 ILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ Sbjct: 361 ILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 >ref|YP_776315.1| leucine/isoleucine/valine transporter permease subunit [Burkholderia ambifaria AMMD] gb|ABI89981.1| L-leucine ABC transporter membrane protein / L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein [Burkholderia ambifaria AMMD] Length = 423 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 323/406 (79%), Positives = 357/406 (87%) Query: 3 ETFKNAVAAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLARPALAR 62 + KNAVAAA +TA+LTIP+LG+QL+L+GY+VVL HW PV +AV AVFLFQL +P L R Sbjct: 18 QALKNAVAAAFLTAILTIPVLGLQLKLDGYQVVLTPHWRPVWIAVAAVFLFQLFKPWLVR 77 Query: 63 TSAGIKLPALPRMQPGQQRAAVLILLMAALVWPFFGSRGYVDVMTLALIYVVLGLGLNIV 122 + +KLPALP M QQR + +LL LVWPFFGSRG VDV TLALIYV+LGLGLNIV Sbjct: 78 AKSAVKLPALPAMGAQQQRVVIWVLLAVGLVWPFFGSRGAVDVATLALIYVILGLGLNIV 137 Query: 123 VGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAALFGFLLGFPVLRLRG 182 VGFAGLLDLGYVGFYAVG YTYA+ NQYFGLSFWEC+P++A AAA FGFLLGFPVLRLRG Sbjct: 138 VGFAGLLDLGYVGFYAVGGYTYAMLNQYFGLSFWECLPIAAVAAATFGFLLGFPVLRLRG 197 Query: 183 DYLAIVTLGFGEIIRLLLNNMTSLTGGPDGISGIPKPTVFGVVMARNPLTEDGTTFHQLL 242 DYLAIVTLGFGEIIRLL NN+TSLTGGPDGIS IPKPTVFG MAR+ E TFH+L+ Sbjct: 198 DYLAIVTLGFGEIIRLLANNLTSLTGGPDGISSIPKPTVFGFEMARSASVEGAKTFHELI 257 Query: 243 GLTYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLGINPTRV 302 GL Y G HMVIFLY +AL++V FT FVTSRL+RMPMGRAWEALR+DEIACRSLG+NPTR+ Sbjct: 258 GLEYSGEHMVIFLYLIALVLVGFTLFVTSRLIRMPMGRAWEALRDDEIACRSLGLNPTRI 317 Query: 303 KLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGVILAAIL 362 KLSAFTLGAAFAG+ G+FFAARQGLV PESFTFIESALILAIVVLGGMGSQLGVILAAIL Sbjct: 318 KLSAFTLGAAFAGIGGAFFAARQGLVNPESFTFIESALILAIVVLGGMGSQLGVILAAIL 377 Query: 363 LTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 LTVLPE+AR FAEYRMLIFGLVMVLMMMWRPQGLLPA+RPHVELPQ Sbjct: 378 LTVLPEVARGFAEYRMLIFGLVMVLMMMWRPQGLLPASRPHVELPQ 423 >ref|ZP_02888208.1| inner-membrane translocator [Burkholderia ambifaria IOP40-10] ref|YP_001811608.1| leucine/isoleucine/valine transporter permease subunit [Burkholderia ambifaria MC40-6] gb|EDT06182.1| inner-membrane translocator [Burkholderia ambifaria IOP40-10] gb|ACB67392.1| inner-membrane translocator [Burkholderia ambifaria MC40-6] Length = 423 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 323/406 (79%), Positives = 357/406 (87%) Query: 3 ETFKNAVAAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLARPALAR 62 + KNAVAAA +TA+LTIP+LG+QL+L+GY+VVL HW PV +AV AVFLFQL +P L R Sbjct: 18 QALKNAVAAAFLTAILTIPVLGLQLKLDGYQVVLTPHWRPVWIAVAAVFLFQLFKPWLVR 77 Query: 63 TSAGIKLPALPRMQPGQQRAAVLILLMAALVWPFFGSRGYVDVMTLALIYVVLGLGLNIV 122 + +KLPALP M QQR + +LL LVWPFFGSRG VDV TLALIYV+LGLGLNIV Sbjct: 78 AKSAVKLPALPAMGAQQQRVVIWVLLAVGLVWPFFGSRGAVDVATLALIYVILGLGLNIV 137 Query: 123 VGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAALFGFLLGFPVLRLRG 182 VGFAGLLDLGYVGFYAVG YTYA+ NQYFGLSFWEC+P++A AAA FGFLLGFPVLRLRG Sbjct: 138 VGFAGLLDLGYVGFYAVGGYTYAMLNQYFGLSFWECLPIAAIAAATFGFLLGFPVLRLRG 197 Query: 183 DYLAIVTLGFGEIIRLLLNNMTSLTGGPDGISGIPKPTVFGVVMARNPLTEDGTTFHQLL 242 DYLAIVTLGFGEIIRLL NN+TSLTGGPDGIS IPKPTVFG MAR+ E TFH+L+ Sbjct: 198 DYLAIVTLGFGEIIRLLANNLTSLTGGPDGISSIPKPTVFGFEMARSASVEGAKTFHELI 257 Query: 243 GLTYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLGINPTRV 302 GL Y G HMVIFLY +AL++V FT FVTSRL+RMPMGRAWEALR+DEIACRSLG+NPTR+ Sbjct: 258 GLEYSGEHMVIFLYLIALVLVGFTLFVTSRLIRMPMGRAWEALRDDEIACRSLGLNPTRI 317 Query: 303 KLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGVILAAIL 362 KLSAFTLGAAFAG+ G+FFAARQGLV PESFTFIESALILAIVVLGGMGSQLGVILAAIL Sbjct: 318 KLSAFTLGAAFAGIGGAFFAARQGLVNPESFTFIESALILAIVVLGGMGSQLGVILAAIL 377 Query: 363 LTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 LTVLPE+AR FAEYRMLIFGLVMVLMMMWRPQGLLPA+RPHVELPQ Sbjct: 378 LTVLPEVARGFAEYRMLIFGLVMVLMMMWRPQGLLPASRPHVELPQ 423 >ref|YP_001778887.1| leucine/isoleucine/valine transporter permease subunit [Burkholderia cenocepacia MC0-3] gb|ACA94397.1| inner-membrane translocator [Burkholderia cenocepacia MC0-3] Length = 423 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 324/406 (79%), Positives = 357/406 (87%) Query: 3 ETFKNAVAAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLARPALAR 62 + KNAVAAA++TA+LTIP+LG+QL+L+GY+VVL HW PV +AV AVFLFQL +P L R Sbjct: 18 QALKNAVAAAILTAILTIPVLGLQLKLDGYQVVLTPHWRPVWIAVAAVFLFQLFKPWLMR 77 Query: 63 TSAGIKLPALPRMQPGQQRAAVLILLMAALVWPFFGSRGYVDVMTLALIYVVLGLGLNIV 122 A +KLPA P M QQR + +LL LVWPFFGSRG VDV TLALIYV+LGLGLNIV Sbjct: 78 AKAAVKLPAAPTMGAQQQRVIIWVLLAVGLVWPFFGSRGAVDVATLALIYVILGLGLNIV 137 Query: 123 VGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAALFGFLLGFPVLRLRG 182 VGFAGLLDLGYVGFYAVG YTYA+ NQYFGLSFWEC+P++A AAA FGFLLGFPVLRLRG Sbjct: 138 VGFAGLLDLGYVGFYAVGGYTYAMLNQYFGLSFWECLPIAAIAAATFGFLLGFPVLRLRG 197 Query: 183 DYLAIVTLGFGEIIRLLLNNMTSLTGGPDGISGIPKPTVFGVVMARNPLTEDGTTFHQLL 242 DYLAIVTLGFGEIIRLL NN+TSLTGGPDGIS IPKPTVFG MAR+ E TFH+L+ Sbjct: 198 DYLAIVTLGFGEIIRLLANNLTSLTGGPDGISSIPKPTVFGFEMARSASVEGAKTFHELI 257 Query: 243 GLTYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLGINPTRV 302 GL Y G HMVIFLY +ALL+V FT FVTSRL+RMPMGRAWEALR+DEIACRSLG+NPTR+ Sbjct: 258 GLEYSGEHMVIFLYLIALLLVGFTLFVTSRLIRMPMGRAWEALRDDEIACRSLGLNPTRI 317 Query: 303 KLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGVILAAIL 362 KLSAFTLGAAFAG+ G+FFAARQGLV PESFTFIESALILAIVVLGGMGSQLGVILAAIL Sbjct: 318 KLSAFTLGAAFAGIGGAFFAARQGLVNPESFTFIESALILAIVVLGGMGSQLGVILAAIL 377 Query: 363 LTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 LTVLPE+AR FAEYRMLIFGLVMVLMMMWRPQGLLPA+RPHVELPQ Sbjct: 378 LTVLPEVARGFAEYRMLIFGLVMVLMMMWRPQGLLPASRPHVELPQ 423 >ref|YP_623218.1| leucine/isoleucine/valine transporter permease subunit [Burkholderia cenocepacia AU 1054] ref|YP_838644.1| leucine/isoleucine/valine transporter permease subunit [Burkholderia cenocepacia HI2424] ref|ZP_04943375.1| ABC branched chain amino acid family transporter, inner membrane subunit [Burkholderia cenocepacia PC184] gb|ABF78245.1| L-isoleucine ABC transporter membrane protein / L-leucine ABC transporter membrane protein / L-valine ABC transporter membrane protein [Burkholderia cenocepacia AU 1054] gb|ABK11751.1| L-leucine ABC transporter membrane protein / L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein [Burkholderia cenocepacia HI2424] gb|EAY66546.1| ABC branched chain amino acid family transporter, inner membrane subunit [Burkholderia cenocepacia PC184] Length = 423 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 324/406 (79%), Positives = 357/406 (87%) Query: 3 ETFKNAVAAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLARPALAR 62 + KNAVAAA++TA+LTIP+LG+QL+L+GY+VVL HW PV +AV AVFLFQL +P L R Sbjct: 18 QALKNAVAAAILTAILTIPVLGLQLKLDGYQVVLTPHWRPVWIAVAAVFLFQLFKPWLMR 77 Query: 63 TSAGIKLPALPRMQPGQQRAAVLILLMAALVWPFFGSRGYVDVMTLALIYVVLGLGLNIV 122 A +KLPA P M QQR + +LL LVWPFFGSRG VDV TLALIYV+LGLGLNIV Sbjct: 78 AKAAVKLPAAPTMGAQQQRVIIWVLLAVGLVWPFFGSRGAVDVATLALIYVILGLGLNIV 137 Query: 123 VGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAALFGFLLGFPVLRLRG 182 VGFAGLLDLGYVGFYAVG YTYA+ NQYFGLSFWEC+P++A AAA FGFLLGFPVLRLRG Sbjct: 138 VGFAGLLDLGYVGFYAVGGYTYAMLNQYFGLSFWECLPIAAIAAATFGFLLGFPVLRLRG 197 Query: 183 DYLAIVTLGFGEIIRLLLNNMTSLTGGPDGISGIPKPTVFGVVMARNPLTEDGTTFHQLL 242 DYLAIVTLGFGEIIRLL NN+TSLTGGPDGIS IPKPTVFG MAR+ E TFH+L+ Sbjct: 198 DYLAIVTLGFGEIIRLLANNLTSLTGGPDGISSIPKPTVFGFEMARSASVEGAKTFHELI 257 Query: 243 GLTYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLGINPTRV 302 GL Y G HMVIFLY +ALL+V FT FVTSRL+RMPMGRAWEALR+DEIACRSLG+NPTR+ Sbjct: 258 GLEYSGEHMVIFLYLIALLLVGFTLFVTSRLIRMPMGRAWEALRDDEIACRSLGLNPTRI 317 Query: 303 KLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGVILAAIL 362 KLSAFTLGAAFAG+ G+FFAARQGLV PESFTFIESALILAIVVLGGMGSQLGVILAAIL Sbjct: 318 KLSAFTLGAAFAGIGGAFFAARQGLVNPESFTFIESALILAIVVLGGMGSQLGVILAAIL 377 Query: 363 LTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 LTVLPE+AR FAEYRMLIFGLVMVLMMMWRPQGLLPA+RPHVELPQ Sbjct: 378 LTVLPEVARGFAEYRMLIFGLVMVLMMMWRPQGLLPASRPHVELPQ 423