BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0307.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775084.1| branched-chain aminoacid ABC transporter per... 479 e-133 ref|YP_727075.1| ABC transporter permease [Ralstonia eutropha H1... 457 e-126 ref|YP_002006124.1| high-affinity branched-chain amino acid tran... 453 e-125 ref|YP_296524.1| inner-membrane translocator [Ralstonia eutropha... 452 e-125 ref|YP_584625.1| leucine/isoleucine/valine ABC transporter membr... 452 e-125 >ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63176.1| ABC-type branched-chain aminoacid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 306/308 (99%), Positives = 308/308 (100%) Query: 11 MNELLPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTA 70 MNELLPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTA Sbjct: 1 MNELLPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTA 60 Query: 71 IGVQSGYPLPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQN 130 IGVQSGYPLPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQN Sbjct: 61 IGVQSGYPLPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQN 120 Query: 131 YVQIGQGARDMSVPVLISGALEFQMGSDFTVTVPYSRMVIVGVTLVLMVALTLFIARSRM 190 YVQIGQGARDMSVPVLISGALEFQMGSDFTVT+PYSRMVIVGVTLVLMVALTLFIARSRM Sbjct: 121 YVQIGQGARDMSVPVLISGALEFQMGSDFTVTIPYSRMVIVGVTLVLMVALTLFIARSRM 180 Query: 191 GRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGI 250 GRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGI Sbjct: 181 GRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGI 240 Query: 251 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLL 310 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLL Sbjct: 241 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLL 300 Query: 311 GKPDIEKV 318 GKPD+EKV Sbjct: 301 GKPDVEKV 308 >ref|YP_727075.1| ABC transporter permease [Ralstonia eutropha H16] ref|YP_004686307.1| HAAT family ABC transporter permease [Cupriavidus necator N-1] emb|CAJ93707.1| ABC-type transporter, permease component: HAAT family [Ralstonia eutropha H16] gb|AEI77826.1| ABC transport system permease protein HAAT family [Cupriavidus necator N-1] Length = 308 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 279/308 (90%), Positives = 298/308 (96%) Query: 11 MNELLPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTA 70 MNE LPQ TQQLVNGL+LGAIYALIAIGYTMVYGIIGMINFAHGEIYMI +YVGLVTLTA Sbjct: 1 MNEFLPQFTQQLVNGLTLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIGAYVGLVTLTA 60 Query: 71 IGVQSGYPLPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQN 130 IG Q+GYPLPL+LG AL+VSVLVTG+YG+ VERVAYRPLRGGPRLVPLISAIGMSIFLQN Sbjct: 61 IGAQAGYPLPLVLGAALLVSVLVTGVYGYAVERVAYRPLRGGPRLVPLISAIGMSIFLQN 120 Query: 131 YVQIGQGARDMSVPVLISGALEFQMGSDFTVTVPYSRMVIVGVTLVLMVALTLFIARSRM 190 YVQIGQGARD+SVPVLISGA+EFQMGSDFTVTVPYSR++IVGVTLVLM+ALTLFI RSRM Sbjct: 121 YVQIGQGARDVSVPVLISGAIEFQMGSDFTVTVPYSRLLIVGVTLVLMIALTLFIGRSRM 180 Query: 191 GRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGI 250 GRACRACAEDM MANLLGIDTNKVISFTFVLGAMLAAVGGVLI LTIGKLNP+IGFIAGI Sbjct: 181 GRACRACAEDMRMANLLGIDTNKVISFTFVLGAMLAAVGGVLIGLTIGKLNPFIGFIAGI 240 Query: 251 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLL 310 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFA+GY+P+EYKDVV+F LLVL+LLFRPTGLL Sbjct: 241 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFASGYMPAEYKDVVAFSLLVLVLLFRPTGLL 300 Query: 311 GKPDIEKV 318 GKPD+EKV Sbjct: 301 GKPDVEKV 308 >ref|YP_002006124.1| high-affinity branched-chain amino acid transport protein (ABC superfamily, membrane) [Cupriavidus taiwanensis LMG 19424] emb|CAQ70061.1| high-affinity branched-chain amino acid transport protein (ABC superfamily, membrane) [Cupriavidus taiwanensis LMG 19424] Length = 308 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 277/308 (89%), Positives = 296/308 (96%) Query: 11 MNELLPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTA 70 MNE LPQ TQQLVNGL+LGAIYALIAIGYTMVYGIIGMINFAHGEIYMI +YVGLVTLTA Sbjct: 1 MNEFLPQFTQQLVNGLTLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIGAYVGLVTLTA 60 Query: 71 IGVQSGYPLPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQN 130 IG Q+GYPLPL+LG AL+VSV+VTG+YG+ VERVAYRPLRGGPRLVPLISAIGMSIFLQN Sbjct: 61 IGAQAGYPLPLVLGAALLVSVMVTGVYGYAVERVAYRPLRGGPRLVPLISAIGMSIFLQN 120 Query: 131 YVQIGQGARDMSVPVLISGALEFQMGSDFTVTVPYSRMVIVGVTLVLMVALTLFIARSRM 190 YVQIGQGARD+SVPVLISGA+EFQMG DFTVTVPYSR++IVGVTL LMVALTLFI RSRM Sbjct: 121 YVQIGQGARDVSVPVLISGAIEFQMGGDFTVTVPYSRLLIVGVTLALMVALTLFIGRSRM 180 Query: 191 GRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGI 250 GRACRACAEDM MANLLGIDTNKVISFTFVLGAMLAAVGGVLI LTIGKLNP+IGFIAGI Sbjct: 181 GRACRACAEDMRMANLLGIDTNKVISFTFVLGAMLAAVGGVLIGLTIGKLNPFIGFIAGI 240 Query: 251 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLL 310 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFA+GY+P+EYKDVV+F LLVL+LLFRPTGLL Sbjct: 241 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFASGYMPAEYKDVVAFSLLVLVLLFRPTGLL 300 Query: 311 GKPDIEKV 318 GKPD+EKV Sbjct: 301 GKPDVEKV 308 >ref|YP_296524.1| inner-membrane translocator [Ralstonia eutropha JMP134] gb|AAZ61680.1| L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-leucine ABC transporter membrane protein [Ralstonia eutropha JMP134] Length = 308 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 274/308 (88%), Positives = 296/308 (96%) Query: 11 MNELLPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTA 70 MNE LPQ TQQLVNGL+LGAIYALIAIGYTMVYGIIGMINFAHGEIYMI +YVGLVTLTA Sbjct: 1 MNEFLPQFTQQLVNGLTLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIGAYVGLVTLTA 60 Query: 71 IGVQSGYPLPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQN 130 IGVQ+GYPLPL+LG AL+VSV++TG YG+ VERVAYRPLRGGPRLVPLISAIGMSIFLQN Sbjct: 61 IGVQAGYPLPLVLGAALLVSVVITGCYGFAVERVAYRPLRGGPRLVPLISAIGMSIFLQN 120 Query: 131 YVQIGQGARDMSVPVLISGALEFQMGSDFTVTVPYSRMVIVGVTLVLMVALTLFIARSRM 190 YVQIGQGARD+SVP+LISGA+EFQMGSDFTVTVPYSR++IVGVTLVLM+ALTLFI SRM Sbjct: 121 YVQIGQGARDVSVPILISGAIEFQMGSDFTVTVPYSRLLIVGVTLVLMIALTLFIGHSRM 180 Query: 191 GRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGI 250 GRACRACAEDM MANLLGIDTN+VISFTFVLGAMLAAVGGVLI LTIGKLNP+IGFIAGI Sbjct: 181 GRACRACAEDMRMANLLGIDTNRVISFTFVLGAMLAAVGGVLIGLTIGKLNPFIGFIAGI 240 Query: 251 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLL 310 KAFTAAVLGGIGSIPGAMLGGVLLGL ETFA+GY+P+EYKDVV+F LLVL+LLFRPTGLL Sbjct: 241 KAFTAAVLGGIGSIPGAMLGGVLLGLVETFASGYMPAEYKDVVAFSLLVLVLLFRPTGLL 300 Query: 311 GKPDIEKV 318 GKPD+EKV Sbjct: 301 GKPDVEKV 308 >ref|YP_584625.1| leucine/isoleucine/valine ABC transporter membrane protein [Cupriavidus metallidurans CH34] gb|ABF09356.1| leucine/isoleucine/valine transporter subunit, membrane component of ABC superfamily [Cupriavidus metallidurans CH34] Length = 308 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 275/308 (89%), Positives = 294/308 (95%) Query: 11 MNELLPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTA 70 MNE LPQ TQQLVNGL+LGAIYALIAIGYTMVYGIIGMINFAHGEIYMI +YVGLVTLTA Sbjct: 1 MNEFLPQFTQQLVNGLTLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIGAYVGLVTLTA 60 Query: 71 IGVQSGYPLPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQN 130 IG Q+GYPLPL+LG ALIVSV VTG YG+ VERVAYRPLRGGPRLVPLISAIGMSIFLQN Sbjct: 61 IGAQAGYPLPLVLGAALIVSVAVTGCYGYAVERVAYRPLRGGPRLVPLISAIGMSIFLQN 120 Query: 131 YVQIGQGARDMSVPVLISGALEFQMGSDFTVTVPYSRMVIVGVTLVLMVALTLFIARSRM 190 YVQIGQGARD+SVP+LISGA+EFQMG DFTVTVPYSR++IVGVTLVLM+ LTLFI SRM Sbjct: 121 YVQIGQGARDVSVPILISGAIEFQMGGDFTVTVPYSRLLIVGVTLVLMIVLTLFIGHSRM 180 Query: 191 GRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGI 250 GRACRACAEDM MANLLGIDTN+VISFTFVLGAMLAAVGGVLI LTIGKLNP+IGFIAGI Sbjct: 181 GRACRACAEDMRMANLLGIDTNRVISFTFVLGAMLAAVGGVLIGLTIGKLNPFIGFIAGI 240 Query: 251 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLL 310 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFA+GY+P+EYKDVV+FGLLVL+LLFRPTGLL Sbjct: 241 KAFTAAVLGGIGSIPGAMLGGVLLGLAETFASGYMPAEYKDVVAFGLLVLVLLFRPTGLL 300 Query: 311 GKPDIEKV 318 GKPD+EKV Sbjct: 301 GKPDVEKV 308