BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0306.p (373 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775083.1| branched-chain amino acid ABC transporter pe... 608 e-172 ref|YP_296525.1| extracellular ligand-binding receptor [Ralstoni... 571 e-161 ref|YP_584626.1| leucine ABC transporter subunit substrate-bindi... 569 e-160 ref|YP_371409.1| branched chain amino acid ABC transporter perip... 568 e-160 ref|ZP_04947763.1| Extracellular ligand-binding receptor [Burkho... 564 e-158 >ref|YP_003775083.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63175.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 362/373 (97%), Positives = 369/373 (98%) Query: 1 MKFASRLTKIALAAATFAAFAGVAHAETVKIAIAGPLTGAVAQYGDMVKAGALTAIEQIN 60 MKFASRLTKIALAAATFAAFAGVAHAETVKIAIAGP+TGAVAQYGDMVKAGALTAIEQIN Sbjct: 1 MKFASRLTKIALAAATFAAFAGVAHAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQIN 60 Query: 61 AAGGANGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGV 120 AAGGANGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGV Sbjct: 61 AAGGANGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGV 120 Query: 121 VMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQG 180 VMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQG Sbjct: 121 VMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQG 180 Query: 181 VASSVKSALEAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQA 240 VASSVK+AL+AAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQA Sbjct: 181 VASSVKAALDAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQA 240 Query: 241 REQGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDAN 300 REQG+KAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRD N Sbjct: 241 REQGIKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDPN 300 Query: 301 GPFQMPAYSAVKIIADAITGAKSTDPDKVAAYIHGNSFKTPIGNVEYDKKGDLKAFKFVV 360 GPFQMPAYS VKIIADAI GAKSTDP+KVAAYIH NSFKTPIGNVEYDKKGDLK+FKFVV Sbjct: 301 GPFQMPAYSGVKIIADAIAGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVV 360 Query: 361 FTWHKDATKTEAK 373 FTWHKDA+KTEAK Sbjct: 361 FTWHKDASKTEAK 373 >ref|YP_296525.1| extracellular ligand-binding receptor [Ralstonia eutropha JMP134] gb|AAZ61681.1| L-isoleucine-binding protein / L-leucine-binding protein / L-valine-binding protein [Ralstonia eutropha JMP134] Length = 371 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 314/368 (85%), Positives = 341/368 (92%), Gaps = 1/368 (0%) Query: 5 SRLTKIALAAATFAAFAGVAHAETVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAAGG 64 SRLT I+LAA A A+AETVKIAIAGP++GAVAQYGDMVKAGALTAIEQINAAGG Sbjct: 4 SRLTSISLAA-VLATLGAAANAETVKIAIAGPMSGAVAQYGDMVKAGALTAIEQINAAGG 62 Query: 65 ANGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMIT 124 A GNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEG+VM+T Sbjct: 63 AGGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGIVMVT 122 Query: 125 PSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASS 184 PSATAPQLTEAK KFIFRTIGRDDQQGPAAA+Y+I K+KPKKVAVLHDKQSYGQG+A+S Sbjct: 123 PSATAPQLTEAKKRKFIFRTIGRDDQQGPAAAQYIISKVKPKKVAVLHDKQSYGQGIATS 182 Query: 185 VKSALEAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQG 244 VK LEAAK+PV +FEGINAGDSDYSA++TKLKSQGVDFVYFGGYHPEMGL+MRQAREQG Sbjct: 183 VKRDLEAAKIPVALFEGINAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLLMRQAREQG 242 Query: 245 VKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDANGPFQ 304 VKA FMGPEGVGNKD+TAIAGPASEGMLVTLPADF+ADPANA LVKAFA KRDANGPFQ Sbjct: 243 VKATFMGPEGVGNKDVTAIAGPASEGMLVTLPADFSADPANAGLVKAFADKKRDANGPFQ 302 Query: 305 MPAYSAVKIIADAITGAKSTDPDKVAAYIHGNSFKTPIGNVEYDKKGDLKAFKFVVFTWH 364 MP+Y+AVKI+ DAI GAKSTDP KVAAY+H N+F+TPIG VEYD KGDLK+FKFVV+TWH Sbjct: 303 MPSYAAVKILGDAIAGAKSTDPTKVAAYMHKNAFQTPIGKVEYDDKGDLKSFKFVVYTWH 362 Query: 365 KDATKTEA 372 KDA+KT A Sbjct: 363 KDASKTAA 370 >ref|YP_584626.1| leucine ABC transporter subunit substrate-binding protein LivK [Cupriavidus metallidurans CH34] gb|ABF09357.1| leucine/isoleucine/valine transporter subunit, periplasmic-binding component of ABC superfamily [Cupriavidus metallidurans CH34] Length = 375 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 317/372 (85%), Positives = 341/372 (91%), Gaps = 5/372 (1%) Query: 5 SRLTKIALAA----ATFAAFAGVAHAETVKIAIAGPLTGAVAQYGDMVKAGALTAIEQIN 60 SRLT A+AA A AAF A+AET+KIAIAGP++G+VAQYGDMVKAGALTAIEQIN Sbjct: 4 SRLTSTAMAAVLATAGLAAFTS-ANAETIKIAIAGPMSGSVAQYGDMVKAGALTAIEQIN 62 Query: 61 AAGGANGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGV 120 AAGGANGNKFEAVMMDDACEPKQAVAVANKIVSQGI YVIGHVCSGSTIPASDIYENEG+ Sbjct: 63 AAGGANGNKFEAVMMDDACEPKQAVAVANKIVSQGIHYVIGHVCSGSTIPASDIYENEGI 122 Query: 121 VMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQG 180 VM+TPSATAPQLTE K FIFRTIGRDDQQGPAAA+Y+I K+KPKKVAVLHDKQSYGQG Sbjct: 123 VMVTPSATAPQLTETKKRNFIFRTIGRDDQQGPAAAQYIINKVKPKKVAVLHDKQSYGQG 182 Query: 181 VASSVKSALEAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQA 240 +ASSVK LEAAK+PV VFEGINAGDSDYSA++TKLKSQGVDFVYFGGYHPEMGL++RQA Sbjct: 183 IASSVKKDLEAAKIPVAVFEGINAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLLLRQA 242 Query: 241 REQGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDAN 300 REQGVKA FMGPEGVGNKD+TAIAGPASEGMLVTLPADF+ADPANAALVKAFA KRD N Sbjct: 243 REQGVKATFMGPEGVGNKDVTAIAGPASEGMLVTLPADFSADPANAALVKAFADKKRDPN 302 Query: 301 GPFQMPAYSAVKIIADAITGAKSTDPDKVAAYIHGNSFKTPIGNVEYDKKGDLKAFKFVV 360 GPFQMPAY+AVKII DAITGAKSTDP KVAAY+H N+F TPIG VEYD KGDLK+FKFVV Sbjct: 303 GPFQMPAYAAVKIIGDAITGAKSTDPTKVAAYMHKNAFNTPIGKVEYDAKGDLKSFKFVV 362 Query: 361 FTWHKDATKTEA 372 +TWHKDATKT A Sbjct: 363 YTWHKDATKTAA 374 >ref|YP_371409.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia sp. 383] gb|ABB10765.1| L-leucine-binding protein / L-isoleucine-binding protein / L-valine-binding protein [Burkholderia sp. 383] Length = 399 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 314/369 (85%), Positives = 337/369 (91%) Query: 5 SRLTKIALAAATFAAFAGVAHAETVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAAGG 64 SRLT I++AA FAA A A AETVKIAIAGP++G+VAQYGDMVKAGALTAIEQINAAGG Sbjct: 31 SRLTSISVAAVLFAAGAAAAQAETVKIAIAGPMSGSVAQYGDMVKAGALTAIEQINAAGG 90 Query: 65 ANGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMIT 124 A GNKFE VMMDDACEPKQAVAVANKIVSQ IKYVIGHVCSGSTIPASDIYENEG+VM+T Sbjct: 91 AGGNKFEVVMMDDACEPKQAVAVANKIVSQKIKYVIGHVCSGSTIPASDIYENEGIVMVT 150 Query: 125 PSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASS 184 PSATAPQLTE K FIFRTIGRDDQQGPAAA Y+I +KPKKVAVLHDKQSYGQG+ASS Sbjct: 151 PSATAPQLTEGKKRHFIFRTIGRDDQQGPAAAHYIINNVKPKKVAVLHDKQSYGQGIASS 210 Query: 185 VKSALEAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQG 244 VK LEAAK+PVV+FEGINAGDSDYSAI+TKLKSQGVDFVYFGGYHPEMGL+MRQAREQG Sbjct: 211 VKKDLEAAKIPVVLFEGINAGDSDYSAIITKLKSQGVDFVYFGGYHPEMGLLMRQAREQG 270 Query: 245 VKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDANGPFQ 304 VKA FMGPEGVGNKD+TAIAGPASEGMLVTLPADF+ADPANAALVKAFA KRD NGPFQ Sbjct: 271 VKATFMGPEGVGNKDVTAIAGPASEGMLVTLPADFSADPANAALVKAFADKKRDPNGPFQ 330 Query: 305 MPAYSAVKIIADAITGAKSTDPDKVAAYIHGNSFKTPIGNVEYDKKGDLKAFKFVVFTWH 364 MPAY+AVKIIAD+I GAK+TDP KVAAY+H +F TPIG V YD +GDLKAFKFVV+TWH Sbjct: 331 MPAYAAVKIIADSIAGAKTTDPTKVAAYMHKTTFDTPIGKVAYDAQGDLKAFKFVVYTWH 390 Query: 365 KDATKTEAK 373 KDATKT AK Sbjct: 391 KDATKTAAK 399 >ref|ZP_04947763.1| Extracellular ligand-binding receptor [Burkholderia dolosa AUO158] gb|EAY70934.1| Extracellular ligand-binding receptor [Burkholderia dolosa AUO158] Length = 372 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 314/369 (85%), Positives = 339/369 (91%) Query: 5 SRLTKIALAAATFAAFAGVAHAETVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAAGG 64 SRLT I++AA FAA A A AETVKIAIAGP++G+VAQYGDMVKAGALTAIEQINAAGG Sbjct: 4 SRLTSISVAAVLFAAGAAAAQAETVKIAIAGPMSGSVAQYGDMVKAGALTAIEQINAAGG 63 Query: 65 ANGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMIT 124 A GNKFEAV+MDDACEPKQAVAVANKIVSQ IKYVIGHVCSGSTIPASDIYENEG+VM+T Sbjct: 64 AGGNKFEAVLMDDACEPKQAVAVANKIVSQKIKYVIGHVCSGSTIPASDIYENEGIVMVT 123 Query: 125 PSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASS 184 PSATAPQLTE K FIFRTIGRDDQQGPAAA+Y+I +KPKKVAVLHDKQSYGQG+ASS Sbjct: 124 PSATAPQLTEGKKRHFIFRTIGRDDQQGPAAAQYIINHVKPKKVAVLHDKQSYGQGIASS 183 Query: 185 VKSALEAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQG 244 VK LEAAK+PVV+FEGINAGDSDYSAI+TKLKSQGVDFVYFGGYHPEMGL+MRQAREQG Sbjct: 184 VKKDLEAAKIPVVLFEGINAGDSDYSAIITKLKSQGVDFVYFGGYHPEMGLLMRQAREQG 243 Query: 245 VKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDANGPFQ 304 VKA FMGPEGVGNKD+TAIAGPASEGMLVTLPADF+ADPANAALVKAFA KRD NGPFQ Sbjct: 244 VKATFMGPEGVGNKDVTAIAGPASEGMLVTLPADFSADPANAALVKAFADKKRDPNGPFQ 303 Query: 305 MPAYSAVKIIADAITGAKSTDPDKVAAYIHGNSFKTPIGNVEYDKKGDLKAFKFVVFTWH 364 MPAY+AVKIIAD+I GAK+TDP KVAAY+H +F TPIG V YD +GDLKAFKFVV+TWH Sbjct: 304 MPAYAAVKIIADSIAGAKTTDPTKVAAYMHKTTFDTPIGKVSYDAQGDLKAFKFVVYTWH 363 Query: 365 KDATKTEAK 373 KDATKT AK Sbjct: 364 KDATKTAAK 372