BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0305.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775082.1| lipoprotein signal peptide protein [Herbaspi... 422 e-116 ref|ZP_03630733.1| conserved hypothetical protein [bacterium Ell... 169 6e-40 ref|YP_612080.1| hypothetical protein TM1040_0085 [Ruegeria sp. ... 164 1e-38 ref|ZP_01035072.1| hypothetical protein ROS217_13261 [Roseovariu... 164 2e-38 ref|YP_169024.1| hypothetical protein SPO3836 [Ruegeria pomeroyi... 163 2e-38 >ref|YP_003775082.1| lipoprotein signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ63174.1| lipoprotein signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 197/229 (86%), Positives = 211/229 (92%) Query: 42 EVRQYQYHQVFISTCRADPRSDTIRMYWKDAAGTPLGNFSRLDAHLRSQGQEMVCATNAG 101 EV+QYQYHQVFISTCRADPR+DTIRMYWKDA G PL NF RLDAHLRSQGQ+MVCATNAG Sbjct: 46 EVKQYQYHQVFISTCRADPRTDTIRMYWKDANGVPLANFLRLDAHLRSQGQDMVCATNAG 105 Query: 102 IYDKQLQPLGLYVEGGNQLRRLNTRKNAYGNFYLQPNGVFVLSERQAYIVETSDYEAELG 161 IYDKQLQPLGLYVE G QLR+LNTR+NAYGNFYLQPNGVFVL +RQAYIVETSDY AE Sbjct: 106 IYDKQLQPLGLYVENGVQLRKLNTRQNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGS 165 Query: 162 LWNGVTRYATQSGPLMIVDGKINPRFDPESANTVVRNAVCLDAAGIVTLAIARNPISFYD 221 LWN V R+ATQSGPLM+V+GKIN RFDP+S N VVRNAVCLD AG+VTLAIARNPISF+D Sbjct: 166 LWNTVARFATQSGPLMLVEGKINHRFDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFD 225 Query: 222 FASFLRDELKCSDALYLDGSISRMYPTLEANMGPAFGAMIAVVKGHGGK 270 FA+FLRDELKCSDALYLDGSISRMYPTLEANMGPAFGAMIAVV+ HG K Sbjct: 226 FATFLRDELKCSDALYLDGSISRMYPTLEANMGPAFGAMIAVVRTHGAK 274 >ref|ZP_03630733.1| conserved hypothetical protein [bacterium Ellin514] gb|EEF59016.1| conserved hypothetical protein [bacterium Ellin514] Length = 243 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 88/234 (37%), Positives = 136/234 (58%), Gaps = 12/234 (5%) Query: 17 LRLLALTGLVPALLLGSGSPPAQAAEVRQYQYHQVFISTCRADPRSDTIRMYWKDAAGTP 76 ++ L TG + +L+ + A A E + ++ CR D R + ++++ +D G P Sbjct: 1 MKSLLFTGWIATMLILN---EASAVEFSTIEVAGKRVTICRVDVRKEKLQLFHRDETGQP 57 Query: 77 LGNFSRLDAHLRSQGQEMVCATNAGIYDKQLQPLGLYVEGGNQLRRLNTRKNAYGNFYLQ 136 NF RL A L+ +GQ++V A N G+Y +GL V G QL LN N GNF+L+ Sbjct: 58 FKNFERLTAWLQPRGQKLVFAMNGGMYHADFSAVGLLVSEGKQLSPLNL-TNGTGNFFLK 116 Query: 137 PNGVFVLSERQAYIVETSDYEA--ELGLWNGVTRYATQSGPLMIVDGKINPRFDPESANT 194 PNG+F++SE A +VE+S+Y E + ATQSGPL++ GKI+P F P+S N Sbjct: 117 PNGIFLVSEAGALVVESSEYPRLRERAI------IATQSGPLLVQGGKIHPAFKPDSQNR 170 Query: 195 VVRNAVCLDAAGIVTLAIARNPISFYDFASFLRDELKCSDALYLDGSISRMYPT 248 +RN V + + + AI+ P++F++FA+ RD L C DALY DG++S ++ T Sbjct: 171 FIRNGVGIPSRDVAIFAISEAPVNFHEFATMFRDTLHCPDALYFDGAVSSLHST 224 >ref|YP_612080.1| hypothetical protein TM1040_0085 [Ruegeria sp. TM1040] gb|ABF62818.1| hypothetical protein TM1040_0085 [Ruegeria sp. TM1040] Length = 257 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 145/247 (58%), Gaps = 16/247 (6%) Query: 22 LTGLVPALLLGSGSPPAQAAEVRQYQYHQVFISTCRADPRSDTIRMYWKDAAGTPLGNFS 81 L GL ++L SG A A E + Y + C D + +R++ +D G +G+FS Sbjct: 6 LWGLPLGIVLWSGQ--ASAVECQDLAYEGNRYALCEVDASREELRLFLRDDTGAVMGHFS 63 Query: 82 RLDAHLRSQGQEMVCATNAGIYDKQLQPLGLYVEGGNQLRRLNTRKNAYGNFYLQPNGVF 141 ++ L ++G+ + ATNAG+Y P+GLYVE G+Q RL T GNF L PNGVF Sbjct: 64 TIEDRLEAEGKTLAFATNAGMYHSDRSPVGLYVEDGSQEMRLVTNPGP-GNFGLVPNGVF 122 Query: 142 VLSERQAYIVETSDYEAELGLWNGVT-RYATQSGPLMIVDGKINPRFDPESANTVVRNAV 200 L E +A ++ET +EA +G T + ATQSGP++++DG+++PRF +S + +RN V Sbjct: 123 CLREGRADVIETLAFEA-----SGTTCKSATQSGPMLVIDGELHPRFLKDSDSRYIRNGV 177 Query: 201 CLDAAG-IVTLAIARNPISFYDFASFLRDELKCSDALYLDGSISRMY-PTLEAN-----M 253 A G V AI+RN ++F+DFA RD L+ ALY DG+ISR++ P L+ + M Sbjct: 178 GTSADGRRVVFAISRNTVNFHDFAGLFRDHLQLPQALYFDGNISRLHAPDLQRSDAGFMM 237 Query: 254 GPAFGAM 260 GP G + Sbjct: 238 GPVVGVI 244 >ref|ZP_01035072.1| hypothetical protein ROS217_13261 [Roseovarius sp. 217] gb|EAQ26147.1| hypothetical protein ROS217_13261 [Roseovarius sp. 217] Length = 254 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 92/238 (38%), Positives = 140/238 (58%), Gaps = 13/238 (5%) Query: 32 GSGSPPAQAAEVRQYQYHQVFISTCRADPRSDTIRMYWKDA-AGTPLGNFSRLDAHLRSQ 90 GSGS QAAE R ++ + C D D +R++ DA +G PLG+F ++ L+++ Sbjct: 15 GSGSGAVQAAECRTERFEDESYTVCAVDIGRDDLRLFLNDAESGAPLGSFGAIENKLKAE 74 Query: 91 GQEMVCATNAGIYDKQLQPLGLYVEGGNQLRRLNTRKNAYGNFYLQPNGVFVLSERQAYI 150 G+ + A NAG+Y P+GLY+E G +++ L TR + GNF L PNGVF + + +A++ Sbjct: 75 GKALAFAMNAGMYHADRSPVGLYIEAGQEVKGLITR-DGPGNFGLLPNGVFCIGDGRAHV 133 Query: 151 VETSDYEAELGLWNGVTRYATQSGPLMIVDGKINPRFDPESANTVVRNAVCLDAAG-IVT 209 +ET Y E RYATQSGP++++DG ++PRF +S + VRN V A G Sbjct: 134 IETLRYARE----RPACRYATQSGPMLVIDGAVHPRFLVDSDSHYVRNGVGTSANGRKAW 189 Query: 210 LAIARNPISFYDFASFLRDELKCSDALYLDGSISRMY-PTLEAN-----MGPAFGAMI 261 I+ N ++F+ F F RD LK + ALY DG +SR++ P + + +GP GA+I Sbjct: 190 FVISDNALNFHTFGRFFRDHLKVAQALYFDGKVSRLHAPGVNRSDIGFPLGPMVGAVI 247 >ref|YP_169024.1| hypothetical protein SPO3836 [Ruegeria pomeroyi DSS-3] gb|AAV97050.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 245 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 135/229 (58%), Gaps = 8/229 (3%) Query: 38 AQAAEVRQYQYHQVFISTCRADPRSDTIRMYWKDAAGTPLGNFSRLDAHLRSQGQEMVCA 97 A A + R + + C D R+ +R++ D G PLG FS +D L+++G+ + A Sbjct: 17 AAAVDCRDLTHEGNLYTVCEVDARTADLRLFLNDVEGAPLGQFSTVDQTLQTEGKRLAFA 76 Query: 98 TNAGIYDKQLQPLGLYVEGGNQLRRLNTRKNAYGNFYLQPNGVFVLSERQAYIVETSDYE 157 NAG+Y P+G YVE G + +R+ GNF L PNGVF L +A ++ET DY+ Sbjct: 77 MNAGMYHDDRSPVGHYVEDGIEQKRVIANAGP-GNFGLLPNGVFCLRSGRADVIETLDYQ 135 Query: 158 AELGLWNGVTRYATQSGPLMIVDGKINPRFDPESANTVVRNAVCLDAAGI-VTLAIARNP 216 A R+ATQSGP++++DG ++PRF P+S + +RN V A G AI+ N Sbjct: 136 AA----KPDCRFATQSGPMLVIDGALHPRFLPDSTSRYIRNGVGTSADGARAVFAISGNS 191 Query: 217 ISFYDFASFLRDELKCSDALYLDGSISRMY-PTL-EANMGPAFGAMIAV 263 ++FY+F + RD LK +ALY DG+ISR+Y P+L A++G + G ++ V Sbjct: 192 VTFYEFGTLFRDVLKTPNALYFDGNISRLYAPSLNRADLGFSMGPIVGV 240