BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0298.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775079.1| cys regulon transcription regulator protein ... 611 e-173 ref|ZP_08272894.1| Alkanesulfonate utilization operon LysR-famil... 499 e-139 ref|YP_004753658.1| alkanesulfonate utilization operon LysR-fami... 486 e-135 ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas... 481 e-134 ref|YP_001352505.1| cys regulon transcriptional activator [Janth... 478 e-133 >ref|YP_003775079.1| cys regulon transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63171.1| cys regulon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 307/311 (98%), Positives = 310/311 (99%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT Sbjct: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP Sbjct: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPQGHPLLG 180 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVP+GHPLLG Sbjct: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLG 180 Query: 181 LEQVTLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 LEQV+LEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV Sbjct: 181 LEQVSLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 Query: 241 GLVASMAVDQGKHTEMVAINASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPDLKRADI 300 GLVASMAVDQGKH EMVAINASHLFKANIARLAVRRGAYLRGYAFDFIQQFAP+LKRADI Sbjct: 241 GLVASMAVDQGKHQEMVAINASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPELKRADI 300 Query: 301 VNALNEANAPQ 311 VNALNEANAPQ Sbjct: 301 VNALNEANAPQ 311 >ref|ZP_08272894.1| Alkanesulfonate utilization operon LysR-family regulator CbI [Oxalobacteraceae bacterium IMCC9480] gb|EGF33635.1| Alkanesulfonate utilization operon LysR-family regulator CbI [Oxalobacteraceae bacterium IMCC9480] Length = 332 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 244/304 (80%), Positives = 272/304 (89%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 MNFQQLRSIREA RC FNLTEVANVLFTSQPGVSRQIRELE+ELGVEIFERNGKRLTGLT Sbjct: 1 MNFQQLRSIREATRCNFNLTEVANVLFTSQPGVSRQIRELEDELGVEIFERNGKRLTGLT 60 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 +PGKGIL IVERLL+EA+NLR AS+EYAG++SGTL++ATTHTQARYVLPRVVQAFR AFP Sbjct: 61 DPGKGILDIVERLLIEADNLRHASEEYAGKKSGTLTVATTHTQARYVLPRVVQAFRAAFP 120 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPQGHPLLG 180 +VRIALQQS+PEHIAEWV+SGKAD+GIATEGLSQF ELVSFPCY W+H IVVP GHPLL Sbjct: 121 EVRIALQQSSPEHIAEWVLSGKADVGIATEGLSQFDELVSFPCYAWNHAIVVPDGHPLLA 180 Query: 181 LEQVTLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 L V+L++LG +PLITYDVGFTGRGHID+AFRQAGI DIVLTAMDSDVIQQYV+LGMGV Sbjct: 181 LASVSLQELGGYPLITYDVGFTGRGHIDDAFRQAGIATDIVLTAMDSDVIQQYVALGMGV 240 Query: 241 GLVASMAVDQGKHTEMVAINASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPDLKRADI 300 G+VASMA++ + + AI ASHLF N+ RLAVRRGAYLR Y DFI QFAP+L RADI Sbjct: 241 GIVASMAIEASQRNGLKAIAASHLFAPNVTRLAVRRGAYLRTYTRDFILQFAPELTRADI 300 Query: 301 VNAL 304 A+ Sbjct: 301 DEAM 304 >ref|YP_004753658.1| alkanesulfonate utilization operon LysR-family regulator CbI [Collimonas fungivorans Ter331] gb|AEK62835.1| Alkanesulfonate utilization operon LysR-family regulator CbI [Collimonas fungivorans Ter331] Length = 330 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 238/305 (78%), Positives = 267/305 (87%), Gaps = 1/305 (0%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGV+IF RNGKRL GLT Sbjct: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFIRNGKRLIGLT 60 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 +PGKGIL IVERLL EAENLR+AS+EY+GE SGTL++A THTQARY LPRVVQ FR +FP Sbjct: 61 DPGKGILKIVERLLQEAENLRQASQEYSGETSGTLTVAATHTQARYALPRVVQGFRASFP 120 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPQGHPLLG 180 VRIALQQS+PEHIA+WVISGKAD+GIATEGL+QFKEL+SFPCY WSHV+VVP+ HPLL Sbjct: 121 DVRIALQQSSPEHIADWVISGKADVGIATEGLTQFKELISFPCYEWSHVLVVPENHPLLE 180 Query: 181 L-EQVTLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMG 239 + E ++L DL +PLITYD+GFTGRGHID+AFR AGI PDIVLTAMDSDVIQQYVSLG+G Sbjct: 181 ISEPISLADLAAYPLITYDIGFTGRGHIDDAFRTAGITPDIVLTAMDSDVIQQYVSLGLG 240 Query: 240 VGLVASMAVDQGKHTEMVAINASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPDLKRAD 299 VGLVASMA + + + +I SHL +N+ RLAVRRGAYLR Y +DFI QFAP LKR D Sbjct: 241 VGLVASMATEHSRQNGLRSIEVSHLLASNVTRLAVRRGAYLRSYTYDFILQFAPQLKRED 300 Query: 300 IVNAL 304 IV AL Sbjct: 301 IVEAL 305 >ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas arsenicoxydans] emb|CAL61027.1| HTH-type transcriptional regulator CysB-like [Herminiimonas arsenicoxydans] Length = 308 Score = 481 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 238/307 (77%), Positives = 266/307 (86%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 MNFQQLRSIRE ARCGFNLTEVANVLFTSQPGVSRQIRELEEELGV+IFERNGKRLTGLT Sbjct: 1 MNFQQLRSIRETARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 +PG+GIL I++RLLLEAENL+RAS+EYAG++ GTL++ATTHTQARY+LP VVQAFR FP Sbjct: 61 DPGRGILTIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPEVVQAFRAEFP 120 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPQGHPLLG 180 +VRIALQQS+PEHIAEWV+SGKADIGIATEGLSQF++LVSFPCY W H IVVPQGH LL Sbjct: 121 KVRIALQQSSPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHHAIVVPQGHALLS 180 Query: 181 LEQVTLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 VTLE L +PLITYD+GFTGRGHID+AF+ A I PDIVLTAMDSDVIQQYVSLG+GV Sbjct: 181 HAPVTLEALAKYPLITYDLGFTGRGHIDDAFKSADIAPDIVLTAMDSDVIQQYVSLGLGV 240 Query: 241 GLVASMAVDQGKHTEMVAINASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPDLKRADI 300 G+VASMAV + I+ SHLF N+ RLAVRRGAYLR Y + FIQQFAP+L RADI Sbjct: 241 GIVASMAVQHNGSHGLAVIDGSHLFAQNVTRLAVRRGAYLRQYTYSFIQQFAPELTRADI 300 Query: 301 VNALNEA 307 AL A Sbjct: 301 DRALKPA 307 >ref|YP_001352505.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] gb|ABR90119.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 308 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 233/304 (76%), Positives = 265/304 (87%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 MNFQQLRSIRE ARCG+NLTEVANVLFTSQPGVSRQIRELEEELGV+IFERNGKRLTGLT Sbjct: 1 MNFQQLRSIRETARCGYNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 +PG+GIL I++RLLLEAENL+RAS+EYAG++ GTL++ATTHTQARY+LP+VVQ FR FP Sbjct: 61 DPGRGILQIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPKVVQVFRKEFP 120 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPQGHPLLG 180 +VRIALQQS PEHIAEWV+SGKADIGIATEGLSQF++LVSFPCY W H +VVP GHPLL Sbjct: 121 KVRIALQQSTPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHHSVVVPDGHPLLE 180 Query: 181 LEQVTLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 + +TL DL + LITYD+GFTGRGHIDEAF+QA I DIVLTAMDSDVIQQYV L +GV Sbjct: 181 KKLITLADLAQYSLITYDLGFTGRGHIDEAFKQADITTDIVLTAMDSDVIQQYVLLNLGV 240 Query: 241 GLVASMAVDQGKHTEMVAINASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPDLKRADI 300 G+VASMA+ Q + I+ASHLF N+ RLAVRRGAYLR Y +DFIQQFAPDL RADI Sbjct: 241 GIVASMALQQNGSNGLKVIDASHLFAQNVTRLAVRRGAYLRQYTYDFIQQFAPDLTRADI 300 Query: 301 VNAL 304 A+ Sbjct: 301 DEAM 304