BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0292.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775074.1| EAL domain-containing protein [Herbaspirillu... 479 e-133 ref|YP_001352434.1| hypothetical protein mma_0744 [Janthinobacte... 289 3e-76 ref|YP_004753672.1| putative signaling protein EAL [Collimonas f... 284 1e-74 ref|XP_002540085.1| conserved hypothetical protein [Ricinus comm... 169 4e-40 ref|YP_726706.1| putative signalling protein EAL [Ralstonia eutr... 166 3e-39 >ref|YP_003775074.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63166.1| EAL domain containing protein [Herbaspirillum seropedicae SmR1] Length = 275 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 250/278 (89%), Positives = 259/278 (93%), Gaps = 3/278 (1%) Query: 1 MAYQALKAYLARLDAQHTGGTASAKVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQIVA 60 MAYQAL AYLARL G T ++ VWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQ++A Sbjct: 1 MAYQALNAYLARLS---KGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIA 57 Query: 61 CEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSV 120 CEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSV Sbjct: 58 CEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSV 117 Query: 121 HARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLG 180 HARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLG Sbjct: 118 HARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLG 177 Query: 181 VSANSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVENKEVFD 240 VSANSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVE++EVF Sbjct: 178 VSANSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVFG 237 Query: 241 KLAWYSQALAQSTLAQGYLWDVPAARLPDTLLGLKDAA 278 +L Y QALAQ AQGYLWDVPAA LP+T L L+DAA Sbjct: 238 RLQQYGQALAQPIHAQGYLWDVPAAHLPETFLALRDAA 275 >ref|YP_001352434.1| hypothetical protein mma_0744 [Janthinobacterium sp. Marseille] gb|ABR91042.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 283 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 144/265 (54%), Positives = 194/265 (73%), Gaps = 3/265 (1%) Query: 1 MAYQALKAYLARLDAQHTGGTASAKVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQIVA 60 M++ AL+ YL+RL H A +WLD+QGRA GR+FN++LTSAFQP+R+ + G IV Sbjct: 1 MSFPALQQYLSRL---HDAPQADTTLWLDQQGRAHGRYFNSTLTSAFQPIRTPETGGIVG 57 Query: 61 CEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSV 120 + F RS+S D GL +WKLLD A+D++SVELDRLCR+LHA+N+YRQ +L+LSV Sbjct: 58 VQGFMRSYSKNDTGLSIWKLLDTGATDEQSVELDRLCRLLHAVNFYRQPEMVDYDLYLSV 117 Query: 121 HARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLG 180 HARLLAAV++NHG+++RR+L L LPH++IVLQLP + P+Q WL+NYV DNYRRNGFRL Sbjct: 118 HARLLAAVDSNHGMSFRRVLDVLGLPHKKIVLQLPQIQPDQAWLMNYVADNYRRNGFRLA 177 Query: 181 VSANSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVENKEVFD 240 V+A + L LL++V+PD+IKVD RE+ D + LL A E+ V++ FKRVE+ +++ Sbjct: 178 VNAADARQGLDLLEQVQPDVIKVDVREITDEAATLDLLCVAGEKDVKLVFKRVESTAIYE 237 Query: 241 KLAWYSQALAQSTLAQGYLWDVPAA 265 KL Q+ LAQGYLWD P A Sbjct: 238 KLRKLGAQAQQTILAQGYLWDQPKA 262 >ref|YP_004753672.1| putative signaling protein EAL [Collimonas fungivorans Ter331] gb|AEK62849.1| putative signaling protein EAL [Collimonas fungivorans Ter331] Length = 301 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 149/274 (54%), Positives = 192/274 (70%), Gaps = 11/274 (4%) Query: 1 MAYQALKAYLARL-----DAQHTGGTASAKVWLDEQGRAAGRFFNTSLTSAFQPVRSFD- 54 M++ AL+ YLARL D + +VWLD GRA GR+FNT+LTS FQP+R + Sbjct: 1 MSFPALEQYLARLNGARDDTNPDPARSDCRVWLDSDGRAQGRYFNTTLTSVFQPLRRIEA 60 Query: 55 -----DGQIVACEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQV 109 G I+ E FA S+SA D+GL+LWKLLD AASDDES+ELDRLCRMLH+IN+YRQ Sbjct: 61 RMSEGKGAIIGHEGFAHSYSANDNGLYLWKLLDHAASDDESIELDRLCRMLHSINFYRQA 120 Query: 110 GEDAPELHLSVHARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVL 169 A +L+LSVHARLLAAV++NHG+A+RRIL L LPHERIVLQLP +T NQ WLLNYVL Sbjct: 121 EAVAGDLYLSVHARLLAAVDSNHGMAFRRILTLLGLPHERIVLQLPTITENQGWLLNYVL 180 Query: 170 DNYRRNGFRLGVSANSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIF 229 DNYRRN FRL V+A+ +A LL++VRPD+IK+DAR + + LL A++G+++ Sbjct: 181 DNYRRNHFRLAVNADDVAQAASLLERVRPDVIKIDARGVTHDEQTTRLLEDCAKRGIQVI 240 Query: 230 FKRVENKEVFDKLAWYSQALAQSTLAQGYLWDVP 263 FKR+E + L ++ A QG+LWD+P Sbjct: 241 FKRLEKARDLEVLQQLARIAALPLHGQGFLWDLP 274 >ref|XP_002540085.1| conserved hypothetical protein [Ricinus communis] gb|EEF22298.1| conserved hypothetical protein [Ricinus communis] Length = 178 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 93/169 (55%), Positives = 117/169 (69%) Query: 99 MLHAINYYRQVGEDAPELHLSVHARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVT 158 MLHAIN++RQ G+ +L+L+VH RLL+AV++NHG A+RRIL ALELP +R+VLQLP T Sbjct: 1 MLHAINFFRQAGDSTADLYLNVHDRLLSAVSSNHGHAFRRILDALELPLDRVVLQLPAAT 60 Query: 159 PNQRWLLNYVLDNYRRNGFRLGVSANSPLEALGLLDKVRPDLIKVDARELADPDSVALLL 218 P Q WLLNYV DNYRRNGFR V+ANS + L +LD+ RPD++K+DAREL D + V LL Sbjct: 61 PQQGWLLNYVSDNYRRNGFRFAVNANSARDGLAVLDRSRPDVLKLDARELQDREGVLTLL 120 Query: 219 LRAAEQGVRIFFKRVENKEVFDKLAWYSQALAQSTLAQGYLWDVPAARL 267 RAA V + KR+E + L S A L QGYL D P + L Sbjct: 121 RRAAAANVSVVCKRLETPQHLAALRELSAAAGVVLLVQGYLLDEPRSVL 169 >ref|YP_726706.1| putative signalling protein EAL [Ralstonia eutropha H16] emb|CAJ93338.1| putative signalling protein EAL [Ralstonia eutropha H16] Length = 283 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 105/254 (41%), Positives = 146/254 (57%), Gaps = 5/254 (1%) Query: 2 AYQALKAYLARLDAQHTGGTASAKVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQIVAC 61 A AL+ YL L Q A ++W D +G+ G+FFN SLTSAF+P+ + D Q+VA Sbjct: 10 AVPALQRYLESLPRQ---PLADRQLWRDARGQVQGQFFNCSLTSAFEPLVTLADRQVVAH 66 Query: 62 EAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVH 121 E +++ GL WKL AA D+ V LDRL R+LHAINY+ GE +L L+VH Sbjct: 67 EGSIHTYAEDGVGLAAWKLFAMAADDNSLVSLDRLSRLLHAINYFAAEGEH--KLVLNVH 124 Query: 122 ARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGV 181 RLLAAV ++HG A+RR L +L LP ER V+Q+P + LL +V+ NYRRNGF + + Sbjct: 125 NRLLAAVTDDHGAAFRRALQSLGLPLERFVIQVPASANDDLALLLHVVGNYRRNGFAVSL 184 Query: 182 SANSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVENKEVFDK 241 A+ P EA L+ PD +K+D R ++ L AA GV + +R++N E ++ Sbjct: 185 QASDPAEAGALMAHALPDWLKLDMRRTWTDRQLSGLRASAANAGVTLIGRRLQNAESVER 244 Query: 242 LAWYSQALAQSTLA 255 L L Q A Sbjct: 245 LQAAGIGLGQGAFA 258