BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0279.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001585662.1| ArsR family transcriptional regulator [Burkh...   131   3e-29
ref|ZP_02893082.1| transcriptional regulator, ArsR family [Burkh...   130   5e-29
ref|YP_002232864.1| ArsR family regulatory protein [Burkholderia...   130   7e-29
ref|YP_004753846.1| arsenical resistance operon repressor [Colli...   127   5e-28
ref|YP_366255.1| ArsR family transcriptional regulator [Burkhold...   127   6e-28

>ref|YP_001585662.1| ArsR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 ref|YP_001941608.1| ArsR family transcriptional regulator, ArsR [Burkholderia
           multivorans ATCC 17616]
 gb|ABX19370.1| transcriptional regulator, ArsR family [Burkholderia multivorans
           ATCC 17616]
 dbj|BAG47618.1| ArsR family transcriptional regulator, ArsR [Burkholderia
           multivorans ATCC 17616]
          Length = 113

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/103 (66%), Positives = 83/103 (80%), Gaps = 1/103 (0%)

Query: 8   VIAALAALAQESRLAIFRHLVQVGPAGSAASKIGEALAIAPSSLSFHMKELSHAGLVTSR 67
           V+ AL ALAQESRLA+FR LV+ GP G  A +I E L IAPSSLSFHMKEL++A LVT  
Sbjct: 6   VVRALGALAQESRLAVFRLLVEAGPGGLPAGQIAERLGIAPSSLSFHMKELTYANLVTVE 65

Query: 68  QEGRFVIYAADYSRMNEVLRFLTDNCCGGNPCTPV-ATCCEPS 109
           Q GRF+IY+A+Y+ MN++L FLT+NCCGGNPCTP+ A  C+PS
Sbjct: 66  QRGRFMIYSANYAAMNDLLGFLTENCCGGNPCTPIGAGGCKPS 108


>ref|ZP_02893082.1| transcriptional regulator, ArsR family [Burkholderia ambifaria
           IOP40-10]
 gb|EDT01331.1| transcriptional regulator, ArsR family [Burkholderia ambifaria
           IOP40-10]
          Length = 170

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 65/97 (67%), Positives = 80/97 (82%)

Query: 9   IAALAALAQESRLAIFRHLVQVGPAGSAASKIGEALAIAPSSLSFHMKELSHAGLVTSRQ 68
           IAAL+ALA ESRLA+FR LVQVGP+G  A +I   L + PSSLSFH+KEL+HA LVTSRQ
Sbjct: 66  IAALSALAHESRLAVFRALVQVGPSGLPAGQIATLLEVPPSSLSFHLKELAHAQLVTSRQ 125

Query: 69  EGRFVIYAADYSRMNEVLRFLTDNCCGGNPCTPVATC 105
           EGRFV Y A+++ MN ++ +LT+NCCGGNPCTPV+ C
Sbjct: 126 EGRFVFYCANFATMNGLVGYLTENCCGGNPCTPVSAC 162


>ref|YP_002232864.1| ArsR family regulatory protein [Burkholderia cenocepacia J2315]
 emb|CAR54091.1| ArsR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 115

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 68/104 (65%), Positives = 80/104 (76%), Gaps = 1/104 (0%)

Query: 9   IAALAALAQESRLAIFRHLVQVGPAGSAASKIGEALAIAPSSLSFHMKELSHAGLVTSRQ 68
           IAALAALA ESRLA+FR LVQ GP G  A +I   L + PSSLSFH+KEL+HA LVTSRQ
Sbjct: 7   IAALAALAHESRLAVFRALVQAGPQGMPAGQIATLLDVPPSSLSFHLKELAHAQLVTSRQ 66

Query: 69  EGRFVIYAADYSRMNEVLRFLTDNCCGGNPCTPVATCCEPSSGI 112
           EGRFV Y A++  MN +L +LT+NCCGGNPC+PV+  C PS  I
Sbjct: 67  EGRFVFYGANFDTMNGLLGYLTENCCGGNPCSPVSV-CSPSGKI 109


>ref|YP_004753846.1| arsenical resistance operon repressor [Collimonas fungivorans
           Ter331]
 gb|AEK63023.1| Arsenical resistance operon repressor [Collimonas fungivorans
           Ter331]
          Length = 113

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/102 (66%), Positives = 80/102 (78%), Gaps = 3/102 (2%)

Query: 8   VIAALAALAQESRLAIFRHLVQVGPAGSAASKIGEALAIAPSSLSFHMKELSHAGLVTSR 67
           V+ ALAALAQ+SRLAIFR LVQ GP G  A KIGE   I+PSS+SFHMKEL HA +V SR
Sbjct: 6   VVTALAALAQDSRLAIFRALVQAGPEGLPAGKIGEITGISPSSVSFHMKELFHADMVASR 65

Query: 68  QEGRFVIYAADYSRMNEVLRFLTDNCCGGNPCTPVATCCEPS 109
            EGRFVIY+A+++ MNE+L FLT+NCCGGNPC P    C P+
Sbjct: 66  NEGRFVIYSANFATMNELLAFLTENCCGGNPCMPT---CSPA 104


>ref|YP_366255.1| ArsR family transcriptional regulator [Burkholderia sp. 383]
 gb|ABB05611.1| transcriptional regulator, ArsR family [Burkholderia sp. 383]
          Length = 111

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/103 (66%), Positives = 82/103 (79%), Gaps = 2/103 (1%)

Query: 9   IAALAALAQESRLAIFRHLVQVGPAGSAASKIGEALAIAPSSLSFHMKELSHAGLVTSRQ 68
           IAALAALA ESRLA+FR LVQ GP G  A +I   L + PSSLSFH+KEL+HA LVTSRQ
Sbjct: 7   IAALAALAHESRLAVFRALVQAGPEGLPAGQIATLLDVPPSSLSFHLKELAHAQLVTSRQ 66

Query: 69  EGRFVIYAADYSRMNEVLRFLTDNCCGGNPCTPVATCCEPSSG 111
           EGRFV Y A+++ MN +L +LT+NCCGGNPC+PV+ C  P+SG
Sbjct: 67  EGRFVFYCANFATMNGLLAYLTENCCGGNPCSPVSAC--PTSG 107