BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0278.p (366 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase [Herbaspiri... 584 e-165 ref|YP_004753687.1| Penicillin-binding protein (D-alanyl-D-alani... 410 e-112 ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase [Herminiimo... 399 e-109 emb|CAL61007.2| D-alanyl-D-alanine endopeptidase precursor (DD-e... 395 e-108 ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase [Janthinoba... 391 e-106 >ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase [Herbaspirillum seropedicae SmR1] gb|ADJ63157.1| D-alanyl-D-alanine-endopeptidase (penicillin-binding) protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 342/367 (93%), Positives = 352/367 (95%), Gaps = 2/367 (0%) Query: 1 MIKSALAIFTSLLFIHAGLAPAAAQTVNNAAKKAPAKKVVAKRPAQAVSKTVAKGSLNNR 60 MIKSALA+ TSLLFIHAGLAPAAAQTVNN AKK KK VAKR AQ VS+TVAKGSLNNR Sbjct: 1 MIKSALAVLTSLLFIHAGLAPAAAQTVNNTAKKP-VKKAVAKRAAQPVSRTVAKGSLNNR 59 Query: 61 EKLVRKVSVVKGKRHISYQRVSAAPSIPVVPPVMTAGDLAGLNLTPDPVGLRSNVALVID 120 EKLVRKV+VVKGKR +SYQRVSAAPS+PVVPPVMTAGD+AGLNLTPDP+ LRSNVALVID Sbjct: 60 EKLVRKVTVVKGKRQVSYQRVSAAPSVPVVPPVMTAGDMAGLNLTPDPLALRSNVALVID 119 Query: 121 QASSQVLFEKNSSVALPIASVTKLMTALVVVEARLNMEETLTVTDDDVDREKHSSSRLRV 180 QA+SQVLFEKNS VALPIASVTKLMTALVVVEAR NMEE LTVTDDDVDREKHSSSRLRV Sbjct: 120 QANSQVLFEKNSGVALPIASVTKLMTALVVVEARQNMEEVLTVTDDDVDREKHSSSRLRV 179 Query: 181 GATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMTDTRYVDSTGL 240 GATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGM DTRYVDSTGL Sbjct: 180 GATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVDSTGL 239 Query: 241 SSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHAMQYNSSNRLTSNKEWDIGL 300 SSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHA+QYNSSNRLTSNKEWDIGL Sbjct: 240 SSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEWDIGL 299 Query: 301 QKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQP-NLTRVK 359 QKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQP NLTR+K Sbjct: 300 QKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQPSNLTRMK 359 Query: 360 MVRADEG 366 MVRADEG Sbjct: 360 MVRADEG 366 >ref|YP_004753687.1| Penicillin-binding protein (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Collimonas fungivorans Ter331] gb|AEK62864.1| Penicillin-binding protein precursor (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Collimonas fungivorans Ter331] Length = 387 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 232/378 (61%), Positives = 288/378 (76%), Gaps = 18/378 (4%) Query: 1 MIKSALAIFTSLLFI--HAGLAPAAAQTVNNAAKKAPAKKVVA---------------KR 43 M KSAL +F SL + +A +A A+AQT ++ AKKA K KR Sbjct: 5 MGKSALIVFLSLFLVLANAPVALASAQTKHSTAKKAAKKPAAGTAAASKKAIAKSGSRKR 64 Query: 44 PAQAVSKTVAKGSLNNREKLVRKVSVVKGKRHISYQRVSAAPSIPVVPPVMTAGDLAGLN 103 + S N EKLV+KV +V G+R ++YQR++ AP +P +PPV++AG+ AGLN Sbjct: 65 LVISARGRSNTASFNKNEKLVKKVVMVHGRRKVTYQRIAFAPVVPALPPVLSAGEQAGLN 124 Query: 104 LTPDPVGLRSNVALVIDQASSQVLFEKNSSVALPIASVTKLMTALVVVEARLNMEETLTV 163 LT DP+ L+S+VALV+DQ SS+VL +KNS +ALPIAS+TKLMT++VVVE++ +M E LTV Sbjct: 125 LTRDPLELKSSVALVLDQNSSEVLLDKNSHIALPIASLTKLMTSMVVVESKQDMNEVLTV 184 Query: 164 TDDDVDREKHSSSRLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAK 223 TDDD+DREKHSSSRLR+G+ L+R DMLHIALMSSENRAASALGR+YPGGLPAFVAAMNAK Sbjct: 185 TDDDIDREKHSSSRLRIGSQLTRADMLHIALMSSENRAASALGRSYPGGLPAFVAAMNAK 244 Query: 224 ARSLGMTDTRYVDSTGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHAMQ 283 AR+LGMT+T YVDSTGLS NVASARDL++LV+AAY +P+IRQYSTD KY+VEP G +Q Sbjct: 245 ARALGMTETHYVDSTGLSHLNVASARDLSRLVMAAYQHPVIRQYSTDSKYVVEPGGRPLQ 304 Query: 284 YNSSNRLTSNKEWDIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAAR 343 Y++SN L N EW IGLQKTG+INEAG C+VM T I+GR IVMVFLDS+G+ S DA R Sbjct: 305 YSTSNHLVENPEWQIGLQKTGYINEAGRCMVMQTTIDGRQIVMVFLDSRGKYSRQADADR 364 Query: 344 MRKWLVDDQP-NLTRVKM 360 +RKWL D P LTRVK+ Sbjct: 365 VRKWLADAHPATLTRVKI 382 >ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans] Length = 400 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 238/390 (61%), Positives = 287/390 (73%), Gaps = 39/390 (10%) Query: 1 MIKSALAIFTSLLFI-HAGLAPA----------------------AAQTVNNAAKKA--- 34 M+KSAL +F SLL I HA +A A + N AA KA Sbjct: 1 MLKSALGVFFSLLVIAHAPVAQAKEPATSSAKKTTAAKAAPAAKRKTASKNTAANKAIGK 60 Query: 35 -----------PAKKVVAKRPAQAVSKTVAKGSLNNREKLVRKVSVVKGKRHISYQRVSA 83 PAK+ AK + S+T + SLN+ EKLV+KV V GK+ + YQRV A Sbjct: 61 SSASSKRTSSKPAKRSNAKAASGKASRTRS-ASLNSDEKLVKKVVTVNGKKRVIYQRV-A 118 Query: 84 APSIPVVPPVMTAGDLAGLNLTPDPVGLRSNVALVIDQASSQVLFEKNSSVALPIASVTK 143 P IP VPPVMTAGD+AGL++T D + L S+VALVIDQ++S+VLFEKN++V LPIAS+TK Sbjct: 119 QPVIPTVPPVMTAGDIAGLSMTRDALALASSVALVIDQSTSEVLFEKNANVTLPIASITK 178 Query: 144 LMTALVVVEARLNMEETLTVTDDDVDREKHSSSRLRVGATLSRDDMLHIALMSSENRAAS 203 LMT LVVVEA+ +M E L VT +D+DREK+SSSRLRVG+ LSR +MLHIALMSSENRAAS Sbjct: 179 LMTGLVVVEAQQDMNEMLEVTAEDIDREKNSSSRLRVGSQLSRANMLHIALMSSENRAAS 238 Query: 204 ALGRNYPGGLPAFVAAMNAKARSLGMTDTRYVDSTGLSSQNVASARDLAKLVVAAYNYPI 263 ALGR+YPGGL AFVA MNAKA+SLGM T YVDSTGLSS NVASARDLAKLVV AYN+PI Sbjct: 239 ALGRHYPGGLRAFVATMNAKAKSLGMRGTHYVDSTGLSSNNVASARDLAKLVVEAYNHPI 298 Query: 264 IRQYSTDPKYMVEPSGHAMQYNSSNRLTSNKEWDIGLQKTGFINEAGHCLVMYTRIEGRP 323 +RQYSTD KY+VEP G A+QY +SNRL +N +W+IG+QKTG+I+EAG CLVM T I+ RP Sbjct: 299 LRQYSTDSKYVVEPGGRALQYANSNRLVTNPDWEIGIQKTGYISEAGRCLVMQTNIKERP 358 Query: 324 IVMVFLDSKGRLSHVGDAARMRKWLVDDQP 353 IVM+FLDSKG+ S +GDAAR+RKWL +P Sbjct: 359 IVMIFLDSKGKFSRLGDAARIRKWLETMEP 388 >emb|CAL61007.2| D-alanyl-D-alanine endopeptidase precursor (DD-endopeptidase) (Penicillin-binding protein 5) (PBP-5) [Herminiimonas arsenicoxydans] Length = 308 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 210/297 (70%), Positives = 252/297 (84%), Gaps = 1/297 (0%) Query: 57 LNNREKLVRKVSVVKGKRHISYQRVSAAPSIPVVPPVMTAGDLAGLNLTPDPVGLRSNVA 116 +N+ EKLV+KV V GK+ + YQRV A P IP VPPVMTAGD+AGL++T D + L S+VA Sbjct: 1 MNSDEKLVKKVVTVNGKKRVIYQRV-AQPVIPTVPPVMTAGDIAGLSMTRDALALASSVA 59 Query: 117 LVIDQASSQVLFEKNSSVALPIASVTKLMTALVVVEARLNMEETLTVTDDDVDREKHSSS 176 LVIDQ++S+VLFEKN++V LPIAS+TKLMT LVVVEA+ +M E L VT +D+DREK+SSS Sbjct: 60 LVIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEMLEVTAEDIDREKNSSS 119 Query: 177 RLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMTDTRYVD 236 RLRVG+ LSR +MLHIALMSSENRAASALGR+YPGGL AFVA MNAKA+SLGM T YVD Sbjct: 120 RLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLRAFVATMNAKAKSLGMRGTHYVD 179 Query: 237 STGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHAMQYNSSNRLTSNKEW 296 STGLSS NVASARDLAKLVV AYN+PI+RQYSTD KY+VEP G A+QY +SNRL +N +W Sbjct: 180 STGLSSNNVASARDLAKLVVEAYNHPILRQYSTDSKYVVEPGGRALQYANSNRLVTNPDW 239 Query: 297 DIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQP 353 +IG+QKTG+I+EAG CLVM T I+ RPIVM+FLDSKG+ S +GDAAR+RKWL +P Sbjct: 240 EIGIQKTGYISEAGRCLVMQTNIKERPIVMIFLDSKGKFSRLGDAARIRKWLETMEP 296 >ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille] gb|ABR89912.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille] Length = 436 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 210/298 (70%), Positives = 252/298 (84%), Gaps = 1/298 (0%) Query: 56 SLNNREKLVRKVSVVKGKRHISYQRVSAAPSIPVVPPVMTAGDLAGLNLTPDPVGLRSNV 115 SLN+ EKLV+K VV+GK+ + YQRV A P + VVPPV+TAGD+AGLN+T D + L SNV Sbjct: 128 SLNSNEKLVKKEVVVRGKKKVIYQRV-AKPVMTVVPPVLTAGDIAGLNMTRDSLALASNV 186 Query: 116 ALVIDQASSQVLFEKNSSVALPIASVTKLMTALVVVEARLNMEETLTVTDDDVDREKHSS 175 ALV+DQ++S VLFEKN++V LPIAS+TKLMT LVVVEA+ +M E L VT++D+DREK+SS Sbjct: 187 ALVLDQSTSAVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEILEVTEEDIDREKNSS 246 Query: 176 SRLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMTDTRYV 235 SRLRVG+ LSR +MLHIALMSSENRAASALGR+YPGG+ AFVAAMNAKARSLGM T YV Sbjct: 247 SRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGIRAFVAAMNAKARSLGMNGTHYV 306 Query: 236 DSTGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHAMQYNSSNRLTSNKE 295 DSTGLSS NVASA DLAKLV+AA N+ I+RQYSTD KY+VEP G A+QY +SNRL +N + Sbjct: 307 DSTGLSSNNVASAADLAKLVIAASNHSILRQYSTDTKYVVEPGGRALQYANSNRLVNNPD 366 Query: 296 WDIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQP 353 W+IG+QKTG+I+EAG CLVM I GRPIVM+FLDSKG+LS +GDAAR+RKWL P Sbjct: 367 WEIGIQKTGYISEAGRCLVMQANINGRPIVMIFLDSKGKLSRLGDAARIRKWLETQHP 424