BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0276.p (414 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775063.1| XRE family transcription regulator protein [... 339 7e-91 ref|YP_004753689.1| hypothetical protein CFU_3041 [Collimonas fu... 281 1e-73 ref|YP_003976610.1| transcriptional regulator 1 [Achromobacter x... 256 4e-66 gb|EFV84843.1| transcriptional regulator [Achromobacter xylosoxi... 253 4e-65 ref|ZP_02373067.1| COG1396:Predicted transcriptional regulators ... 251 2e-64 >ref|YP_003775063.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63155.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 339 bits (869), Expect = 7e-91, Method: Composition-based stats. Identities = 187/262 (71%), Positives = 208/262 (79%), Gaps = 2/262 (0%) Query: 1 MEPDLARRALGDFLKSQREQTAPAQAGLPHLA-HGRRRTPGLRREEVAQLCGISVTWYTW 59 MEPDLARRALG+F+K+QR+Q APA AGLP +A GRRRTPGLRREEVAQLCGISVTWYTW Sbjct: 1 MEPDLARRALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTW 60 Query: 60 IEQGRTDSVSPQALARIADALHLPRAKRAYLFELAEKKDPVHQEDHTES-IAPEILDVVR 118 IEQGRT+SVSPQALARIADAL LPRAKR YLFELA KKDP + H ES IAPEIL+VV Sbjct: 61 IEQGRTESVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEILEVVS 120 Query: 119 SIRQPAYVLDRYWNALACNAPARKLFTGWLTAGSEYGNLLFFTFCTTASQELITDWEQRA 178 R PAY+LDR WN +A N ARKLF GWL S NLL F F + ++ L DWEQRA Sbjct: 121 QFRAPAYLLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRA 180 Query: 179 RRLVAEFRADCGQYLDDPQIKTMVEELSARSALFKRAWSLQDVVDREGGKRLFRHPVQGE 238 RLVAEFRADC LDDP ++ +V+ELSA +ALF+RAW LQDVV REGG+R FR P E Sbjct: 181 HRLVAEFRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTE 240 Query: 239 LTYQQVNFRVANRPDLKLITLM 260 L Y QVNFRVANRPDLKL+TLM Sbjct: 241 LRYLQVNFRVANRPDLKLVTLM 262 >ref|YP_004753689.1| hypothetical protein CFU_3041 [Collimonas fungivorans Ter331] gb|AEK62866.1| hypothetical protein CFU_3041 [Collimonas fungivorans Ter331] Length = 260 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 156/260 (60%), Positives = 191/260 (73%), Gaps = 2/260 (0%) Query: 1 MEPDLARRALGDFLKSQREQTAPAQAGLPHLAHGRRRTPGLRREEVAQLCGISVTWYTWI 60 M+ R+ALG+F+++QR Q A L RRRTPGLRREEVAQLC ISVTWYTWI Sbjct: 1 MDQTGKRKALGEFIRTQRIQLPTAALRLG--GSTRRRTPGLRREEVAQLCDISVTWYTWI 58 Query: 61 EQGRTDSVSPQALARIADALHLPRAKRAYLFELAEKKDPVHQEDHTESIAPEILDVVRSI 120 EQGRT SVS ALARIA+AL L RAKRAYLFEL+ KKDP Q+ + I EIL V +I Sbjct: 59 EQGRTVSVSAAALARIAEALQLSRAKRAYLFELSGKKDPQAQDGLAQEIPAEILAVTDTI 118 Query: 121 RQPAYVLDRYWNALACNAPARKLFTGWLTAGSEYGNLLFFTFCTTASQELITDWEQRARR 180 + PAY+LDR+WNA+A N A+ LF GWL + NLL +T+CT + LI+DWEQRA R Sbjct: 119 KTPAYLLDRHWNAVAWNRAAKTLFVGWLDKKTASRNLLEYTYCTADAANLISDWEQRASR 178 Query: 181 LVAEFRADCGQYLDDPQIKTMVEELSARSALFKRAWSLQDVVDREGGKRLFRHPVQGELT 240 L AEFRADCG YLD+P+I +V LSA S+ FKRAW+L DVV++EGG+R F HP G+L+ Sbjct: 179 LAAEFRADCGMYLDEPEIAELVARLSAASSAFKRAWNLHDVVEKEGGERRFSHPTLGQLS 238 Query: 241 YQQVNFRVANRPDLKLITLM 260 Y+QVN RVANR +LKL+ L+ Sbjct: 239 YRQVNLRVANRLELKLVMLL 258 >ref|YP_003976610.1| transcriptional regulator 1 [Achromobacter xylosoxidans A8] gb|ADP13895.1| transcriptional regulator 1 [Achromobacter xylosoxidans A8] Length = 272 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 139/256 (54%), Positives = 178/256 (69%), Gaps = 4/256 (1%) Query: 5 LARRALGDFLKSQREQTAPAQAGLPHLAHGRRRTPGLRREEVAQLCGISVTWYTWIEQGR 64 L R+ALG+F++S R + P AGLP RRRTPGLRREEVAQLCGISVTWYTWIEQGR Sbjct: 17 LRRQALGEFVRSARSRITPQMAGLPEGM--RRRTPGLRREEVAQLCGISVTWYTWIEQGR 74 Query: 65 TDSVSPQALARIADALHLPRAKRAYLFELAEKKDPVHQEDHTESIAPEILDVVRSIRQPA 124 SVSP +RIA L L RA+RAYLF+LA+ DP H D + P + + V +I PA Sbjct: 75 EVSVSPSVWSRIAGVLQLARAERAYLFDLADCADPQHGRDDAGAPGP-LQECVNAINAPA 133 Query: 125 YVLDRYWNALACNAPARKLFTGWLTAGSEYGNLLFFTFCTTASQELITDWEQRARRLVAE 184 YVLDR WN LA N P R+LF W +E NLL + F A++EL+ DW+QRARR+VAE Sbjct: 134 YVLDRAWNVLAYNEPLRELFDNWPARDAE-PNLLRYIFLDPAARELVVDWDQRARRVVAE 192 Query: 185 FRADCGQYLDDPQIKTMVEELSARSALFKRAWSLQDVVDREGGKRLFRHPVQGELTYQQV 244 FRAD G +LD+P + +++ L+ +S +F W+ VV+REGG R F+HP +G+L YQQ+ Sbjct: 193 FRADAGAHLDEPGVLALLDSLNRQSPVFAHWWTRHAVVEREGGLREFQHPGRGKLAYQQI 252 Query: 245 NFRVANRPDLKLITLM 260 FR+A PDLKL+ L+ Sbjct: 253 TFRLATHPDLKLVMLL 268 >gb|EFV84843.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 275 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 137/256 (53%), Positives = 173/256 (67%), Gaps = 3/256 (1%) Query: 5 LARRALGDFLKSQREQTAPAQAGLPHLAHGRRRTPGLRREEVAQLCGISVTWYTWIEQGR 64 L R+ALG+F++S R + P AGLP RRRTPGLRREEVAQLCGISVTWYTWIEQGR Sbjct: 17 LRRQALGEFVRSARSRITPQMAGLPEGM--RRRTPGLRREEVAQLCGISVTWYTWIEQGR 74 Query: 65 TDSVSPQALARIADALHLPRAKRAYLFELAEKKDPVHQEDHTESIAPEILDVVRSIRQPA 124 SVSP +RIA L L RA+RAYLF+LA+ DP H D + + V +I PA Sbjct: 75 EVSVSPSVWSRIAGVLQLARAERAYLFDLADCADPQHARDDALGAPGSLRECVDAITAPA 134 Query: 125 YVLDRYWNALACNAPARKLFTGWLTAGSEYGNLLFFTFCTTASQELITDWEQRARRLVAE 184 YVLDR WN LACN P R+LF W E NLL + F A++EL+ DWEQRARR+VAE Sbjct: 135 YVLDRAWNVLACNEPLRELFDDWPARDPE-PNLLRYIFLDPAARELVVDWEQRARRVVAE 193 Query: 185 FRADCGQYLDDPQIKTMVEELSARSALFKRAWSLQDVVDREGGKRLFRHPVQGELTYQQV 244 FRAD G +LD+P + +++ L+ +S +F W+ VV+REGG R F HP +G + +QQ+ Sbjct: 194 FRADAGAHLDEPTVLALIDALNRQSPVFAHWWNRHAVVEREGGLREFAHPRRGRMAFQQI 253 Query: 245 NFRVANRPDLKLITLM 260 FR+A DLKL+ L+ Sbjct: 254 TFRLATHLDLKLVMLL 269 >ref|ZP_02373067.1| COG1396:Predicted transcriptional regulators [Burkholderia thailandensis TXDOH] Length = 271 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 139/253 (54%), Positives = 173/253 (68%), Gaps = 2/253 (0%) Query: 8 RALGDFLKSQREQTAPAQAGLPHLAHGRRRTPGLRREEVAQLCGISVTWYTWIEQGRTDS 67 RALG+F+++ RE+ P GLP RRRTPGLRREEVAQLCG+S TWYTWIEQGR S Sbjct: 17 RALGEFIRAHRERLTPQAVGLP--PGPRRRTPGLRREEVAQLCGVSPTWYTWIEQGREVS 74 Query: 68 VSPQALARIADALHLPRAKRAYLFELAEKKDPVHQEDHTESIAPEILDVVRSIRQPAYVL 127 S ALARIA AL L RA+RAYLFELA ++DP E + ++ V+ I PAYVL Sbjct: 75 ASADALARIAVALRLSRAERAYLFELAAQRDPAEPEFAASDVPDTLVAAVKLIATPAYVL 134 Query: 128 DRYWNALACNAPARKLFTGWLTAGSEYGNLLFFTFCTTASQELITDWEQRARRLVAEFRA 187 DR WNALA N PA LFTGWL + NLL FTF + A++ LI DWE RARRLVAEFRA Sbjct: 135 DRQWNALAWNDPAAALFTGWLDGERDERNLLRFTFASPAARALIVDWETRARRLVAEFRA 194 Query: 188 DCGQYLDDPQIKTMVEELSARSALFKRAWSLQDVVDREGGKRLFRHPVQGELTYQQVNFR 247 D ++L+D + +++ L A S F W+ QDV +REGG+R F HP +G + YQQ+ + Sbjct: 195 DTIRHLNDAPTRALIDSLLAESDAFAHYWASQDVGEREGGERAFDHPREGRVVYQQMTLK 254 Query: 248 VANRPDLKLITLM 260 A+R DLKL+ L+ Sbjct: 255 PAHRDDLKLVVLV 267