BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0266.p (330 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775055.1| signal peptide protein [Herbaspirillum serop... 608 e-172 ref|YP_004753699.1| hypothetical protein CFU_3051 [Collimonas fu... 464 e-129 ref|ZP_08272653.1| Surface antigen [Oxalobacteraceae bacterium I... 446 e-123 ref|YP_002005892.1| hypothetical protein RALTA_A1886 [Cupriavidu... 396 e-108 ref|YP_584216.1| hypothetical protein Rmet_2068 [Cupriavidus met... 392 e-107 >ref|YP_003775055.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ63147.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 306/330 (92%), Positives = 314/330 (95%), Gaps = 3/330 (0%) Query: 1 MLRRFSQLLSLSLRAACVSAVLACMAAPVHANVVVVLNSGDASVSLLDETGEKELSTFSV 60 MLRR Q SL+LRAACVSAVLA A HANVVVVLNSGDASVSLLDETGEKELSTFSV Sbjct: 1 MLRRIRQYFSLTLRAACVSAVLAVSA---HANVVVVLNSGDASVSLLDETGEKELSTFSV 57 Query: 61 GKEPHHLMATPDNKSLIVASATGNQLLFLDPKTGVVQRKLRDIIDPYQIGFTPDQKWFVA 120 GKEPHHLMATPDNKSLIVASATGNQLLFLDPKTG VQRK+RDIIDPYQIGFTPDQKWFVA Sbjct: 58 GKEPHHLMATPDNKSLIVASATGNQLLFLDPKTGAVQRKIRDIIDPYQIGFTPDQKWFVA 117 Query: 121 TGLRLDRVDVYSYDGQDLKLSKRIPLAKTPSHIAFDNASTTAFITQQGSDQISAIDLATQ 180 TGLRLDRVDVYSYDGQDLKLSKRIPL KTPSHIAFDNASTTAFITQQGSDQISAIDLATQ Sbjct: 118 TGLRLDRVDVYSYDGQDLKLSKRIPLPKTPSHIAFDNASTTAFITQQGSDQISAIDLATQ 177 Query: 181 QVKWTMPVGKLPAGIIMTPDNKYLMVGIMGSDYVEVIDWRTQKMVKKIKTGIGAHNFRGQ 240 QVKWTMPVGKLPAGIIMTPDNKYLMVGIMG+DYVEVIDWRTQK+VKKIKTG+GAHNFRGQ Sbjct: 178 QVKWTMPVGKLPAGIIMTPDNKYLMVGIMGADYVEVIDWRTQKIVKKIKTGVGAHNFRGQ 237 Query: 241 GDKRYVYVSNRVANTISVVDMTTLENVGTIKVPGGPDCMEVTADGKTMWATLRWSKKVAV 300 GDKR+VYVSNRVANTISVVDMTTLENVGTIKVPGGPDCMEVT+DGKTMWATLRW KKVAV Sbjct: 238 GDKRFVYVSNRVANTISVVDMTTLENVGTIKVPGGPDCMEVTSDGKTMWATLRWVKKVAV 297 Query: 301 IDLETRSVTKVIPVGRSPHGIYFINRAADL 330 IDL +RSVTKVIPVGRSPHGIY NRA DL Sbjct: 298 IDLASRSVTKVIPVGRSPHGIYLHNRAPDL 327 >ref|YP_004753699.1| hypothetical protein CFU_3051 [Collimonas fungivorans Ter331] gb|AEK62876.1| conserved hypothetical signal peptide protein [Collimonas fungivorans Ter331] Length = 342 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 214/300 (71%), Positives = 261/300 (87%) Query: 31 ANVVVVLNSGDASVSLLDETGEKELSTFSVGKEPHHLMATPDNKSLIVASATGNQLLFLD 90 N VVVLNS DA+++LLD+T KE++TF VGKEPHHLM TPDNKSLIVA+ATGN LLFLD Sbjct: 43 GNTVVVLNSRDATITLLDQTTYKEINTFPVGKEPHHLMPTPDNKSLIVAAATGNALLFLD 102 Query: 91 PKTGVVQRKLRDIIDPYQIGFTPDQKWFVATGLRLDRVDVYSYDGQDLKLSKRIPLAKTP 150 PK+G +Q +++DI+DPYQIGF+P+QKWF+A GLRLDR+D+Y YDG++LKL+KR+PL P Sbjct: 103 PKSGQLQSQVKDIVDPYQIGFSPNQKWFIANGLRLDRIDIYGYDGKNLKLAKRLPLPSMP 162 Query: 151 SHIAFDNASTTAFITQQGSDQISAIDLATQQVKWTMPVGKLPAGIIMTPDNKYLMVGIMG 210 SH+AF S AFIT QGSD+++A+DLATQ+VKWTMP+GK PAG+ MTPDNKYL+VG+MG Sbjct: 163 SHMAFTADSALAFITLQGSDELAAVDLATQKVKWTMPIGKQPAGVYMTPDNKYLLVGVMG 222 Query: 211 SDYVEVIDWRTQKMVKKIKTGIGAHNFRGQGDKRYVYVSNRVANTISVVDMTTLENVGTI 270 SDYV V+DWRTQK+VKKIKTG GAHNFR QGD R+V+VSNRVA +I+V+D+ TLE+VG+I Sbjct: 223 SDYVAVVDWRTQKIVKKIKTGDGAHNFRPQGDNRHVFVSNRVAGSINVLDLNTLESVGSI 282 Query: 271 KVPGGPDCMEVTADGKTMWATLRWSKKVAVIDLETRSVTKVIPVGRSPHGIYFINRAADL 330 VPGGPDCMEVTADGKTMW T RW K+V+V+DL TR V K I VGRSPHGIYF NRA++L Sbjct: 283 AVPGGPDCMEVTADGKTMWVTQRWLKRVSVVDLGTRKVIKTIAVGRSPHGIYFNNRASEL 342 >ref|ZP_08272653.1| Surface antigen [Oxalobacteraceae bacterium IMCC9480] gb|EGF33876.1| Surface antigen [Oxalobacteraceae bacterium IMCC9480] Length = 286 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 210/285 (73%), Positives = 248/285 (87%) Query: 44 VSLLDETGEKELSTFSVGKEPHHLMATPDNKSLIVASATGNQLLFLDPKTGVVQRKLRDI 103 +SL+D+ K TFSVGKEPHHLMATPDNKSLIVASATG++L+FLDP TG +QR++++I Sbjct: 1 MSLIDQDTYKVTDTFSVGKEPHHLMATPDNKSLIVASATGDELVFLDPATGEIQRRVKNI 60 Query: 104 IDPYQIGFTPDQKWFVATGLRLDRVDVYSYDGQDLKLSKRIPLAKTPSHIAFDNASTTAF 163 DPYQIGF+PDQKWFVA LRLDRVD+Y YDG+D+ L+KR+PL K PSH+ F S+T F Sbjct: 61 ADPYQIGFSPDQKWFVANALRLDRVDIYRYDGKDMTLAKRVPLPKLPSHMVFTADSSTVF 120 Query: 164 ITQQGSDQISAIDLATQQVKWTMPVGKLPAGIIMTPDNKYLMVGIMGSDYVEVIDWRTQK 223 ITQQGSD+ISAIDLATQ VKWTMPVGKLPAGI +TPD+KYLMVGIMGSD VEVIDWRTQK Sbjct: 121 ITQQGSDEISAIDLATQTVKWTMPVGKLPAGITLTPDDKYLMVGIMGSDVVEVIDWRTQK 180 Query: 224 MVKKIKTGIGAHNFRGQGDKRYVYVSNRVANTISVVDMTTLENVGTIKVPGGPDCMEVTA 283 +VK+IK G G HNF + D R+++VSNRV+NTI+++DM TLENVGTI VPGGPDCME+TA Sbjct: 181 VVKRIKAGAGTHNFHPKSDGRHMFVSNRVSNTINLIDMKTLENVGTINVPGGPDCMELTA 240 Query: 284 DGKTMWATLRWSKKVAVIDLETRSVTKVIPVGRSPHGIYFINRAA 328 DGKT+W TLRW KKVAVID+ +R V K+IPVGRSPHG+YFINRAA Sbjct: 241 DGKTLWVTLRWIKKVAVIDVASRKVIKLIPVGRSPHGVYFINRAA 285 >ref|YP_002005892.1| hypothetical protein RALTA_A1886 [Cupriavidus taiwanensis LMG 19424] emb|CAQ69827.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 328 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 192/307 (62%), Positives = 242/307 (78%), Gaps = 1/307 (0%) Query: 22 LACMAAPVHANVVVVLNSGDASVSLLDETGEKELSTFSVGKEPHHLMATPDNKSLIVASA 81 L MAAP A VVV+LNSGDA+V+L+D+ +K L TF +GKEPHHL+ATPD+KSLIVA+A Sbjct: 19 LGLMAAPASAEVVVILNSGDATVTLIDKDTQKVLDTFPIGKEPHHLIATPDDKSLIVANA 78 Query: 82 TGNQLLFLDPKTGVVQRKLRDIIDPYQIGFTPDQKWFVATGLRLDRVDVYSYDGQDLKLS 141 GN L+FLDP TG VQ+++ +I DPYQIGF+PDQKWFVATG RLDRVDVY +DG+ LKL+ Sbjct: 79 VGNDLVFLDPVTGKVQQRVPNIDDPYQIGFSPDQKWFVATGNRLDRVDVYRWDGKALKLA 138 Query: 142 KRIPLAKTPSHIAFDNASTTAFITQQGSDQISAIDLATQQVKWTMPVGKLPAGIIMTPDN 201 K+ PLAKTPSHIAF S AFIT Q S++I+AIDL TQ V W M G PAGI +TPD Sbjct: 139 KQYPLAKTPSHIAFTADSRIAFITLQDSNEIAAIDLVTQNVMWRMETGSAPAGIWVTPDQ 198 Query: 202 KYLMVGIMGSDYVEVIDWRTQKMVKKIKTGIGAHNFRGQGDKRYVYVSNRVANTISVVDM 261 KYL+VG+ G+DYV VIDWRT+ +VK+I+TG GAHNFR GD+R++++SNRV +IS++D Sbjct: 199 KYLLVGMTGADYVAVIDWRTRTVVKQIQTGKGAHNFRAVGDRRHLFLSNRVTGSISIIDQ 258 Query: 262 TTLENVGTIK-VPGGPDCMEVTADGKTMWATLRWSKKVAVIDLETRSVTKVIPVGRSPHG 320 TL VG I +P GPD ME+TADGKT+W T RW++ V ++D+ +R + K + VGRSPHG Sbjct: 259 QTLSKVGDITGLPPGPDDMELTADGKTLWVTFRWARSVGLVDVASRKLVKTVRVGRSPHG 318 Query: 321 IYFINRA 327 IYF RA Sbjct: 319 IYFRTRA 325 >ref|YP_584216.1| hypothetical protein Rmet_2068 [Cupriavidus metallidurans CH34] gb|ABF08947.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 328 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 197/324 (60%), Positives = 249/324 (76%), Gaps = 7/324 (2%) Query: 11 LSLRAACVSAV------LACMAAPVHANVVVVLNSGDASVSLLDETGEKELSTFSVGKEP 64 L+LR AV LA ++AP A VVV+LNSGDASV+L+D+ +K L TF +GKEP Sbjct: 2 LALRRVVAGAVSVGALALALVSAPARAEVVVILNSGDASVTLIDKDTQKVLETFPIGKEP 61 Query: 65 HHLMATPDNKSLIVASATGNQLLFLDPKTGVVQRKLRDIIDPYQIGFTPDQKWFVATGLR 124 HHL+ATPD+KSLIVA+A GN L+FLDP TG VQ+++ +I DPYQIGF+PDQKWF+ATG R Sbjct: 62 HHLIATPDDKSLIVANAVGNDLVFLDPVTGKVQQRVPNIDDPYQIGFSPDQKWFIATGNR 121 Query: 125 LDRVDVYSYDGQDLKLSKRIPLAKTPSHIAFDNASTTAFITQQGSDQISAIDLATQQVKW 184 LDRVDVY +DG+ LK++K+ PLAKTPSHIAF S AFIT Q S+QI+AIDL T V W Sbjct: 122 LDRVDVYRWDGRQLKIAKQFPLAKTPSHIAFTADSKIAFITLQDSNQIAAIDLTTLTVLW 181 Query: 185 TMPVGKLPAGIIMTPDNKYLMVGIMGSDYVEVIDWRTQKMVKKIKTGIGAHNFRGQGDKR 244 TM G PAGI +TPD KYL+VG+ G+DYV VIDWRT+ +VK+I+TG GAHNFR GDKR Sbjct: 182 TMEAGSAPAGIWVTPDQKYLLVGMTGADYVAVIDWRTRTVVKQIQTGKGAHNFRAVGDKR 241 Query: 245 YVYVSNRVANTISVVDMTTLENVGTIK-VPGGPDCMEVTADGKTMWATLRWSKKVAVIDL 303 ++++SNRV+ +IS++D TL VG I + GPD ME+TADGKT+W T RW++ V +ID+ Sbjct: 242 HLFLSNRVSGSISIIDQQTLSKVGEITGLLPGPDDMELTADGKTLWVTFRWARSVGLIDV 301 Query: 304 ETRSVTKVIPVGRSPHGIYFINRA 327 +R + K I VG+SPHGIYF RA Sbjct: 302 ASRKMIKTIRVGKSPHGIYFRTRA 325