BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0265.p         (145 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775054.1| FKBP-type peptidyl-prolyl cis-trans isomeras...   216   6e-55
ref|YP_004753700.1| peptidyl-prolyl cis-trans isomerase [Collimo...   189   9e-47
ref|YP_001099127.1| peptidyl-prolyl cis-trans isomerase [Hermini...   189   2e-46
emb|CBJ38867.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia s...   184   3e-45
ref|NP_518905.1| FKBP-type peptidyl-prolyl cis-trans isomerase [...   184   3e-45

>ref|YP_003775054.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Herbaspirillum
           seropedicae SmR1]
 emb|CAM32609.1| FKBP-type peptidyl-prolyl cis-trans isomerase I protein
           [Herbaspirillum seropedicae]
 gb|ADJ63146.1| FKBP-type peptidyl-prolyl cis-trans isomerase I protein
           [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  216 bits (551), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 113/118 (95%), Positives = 115/118 (97%)

Query: 28  MSIITTASGLQYEEINVGAGDEAKAGSHVTVHYTGWLQNTDGTAGSKFDSSKDRNDPFAF 87
           MS ITTASGLQYEEIN+GAGDEAKAGSHVTVHYTGWLQN DG+AGSKFDSSKDRNDPFAF
Sbjct: 1   MSTITTASGLQYEEINIGAGDEAKAGSHVTVHYTGWLQNDDGSAGSKFDSSKDRNDPFAF 60

Query: 88  PLGAGHVIKGWDEGVQGMKVGGTRKLIIPAGLGYGARGAGGVIPPNATLIFEVELLAV 145
           PLGAGHVIKGWDEGVQGMKVGGTRKLIIPA LGYGARGAGGVIPPNATLIFEVELLAV
Sbjct: 61  PLGAGHVIKGWDEGVQGMKVGGTRKLIIPASLGYGARGAGGVIPPNATLIFEVELLAV 118


>ref|YP_004753700.1| peptidyl-prolyl cis-trans isomerase [Collimonas fungivorans Ter331]
 gb|AEK62877.1| peptidyl-prolyl cis-trans isomerase (rotamase) [Collimonas
           fungivorans Ter331]
          Length = 118

 Score =  189 bits (481), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 98/118 (83%), Positives = 103/118 (87%)

Query: 28  MSIITTASGLQYEEINVGAGDEAKAGSHVTVHYTGWLQNTDGTAGSKFDSSKDRNDPFAF 87
           MS  TT SGLQYE++ VG G EAKAG HVTVHYTGWLQN+DG+AG KFDSSKDR DPF F
Sbjct: 1   MSTTTTVSGLQYEDVIVGDGAEAKAGDHVTVHYTGWLQNSDGSAGKKFDSSKDRGDPFEF 60

Query: 88  PLGAGHVIKGWDEGVQGMKVGGTRKLIIPAGLGYGARGAGGVIPPNATLIFEVELLAV 145
           PL AGHVIKGWDEGVQGMK+GGTR LIIPA LGYG RGAGGVIPPNATLIFEVELL V
Sbjct: 61  PLNAGHVIKGWDEGVQGMKIGGTRTLIIPAALGYGPRGAGGVIPPNATLIFEVELLGV 118


>ref|YP_001099127.1| peptidyl-prolyl cis-trans isomerase [Herminiimonas arsenicoxydans]
 emb|CAL61000.1| Peptidyl-prolyl cis-trans isomerase [Herminiimonas arsenicoxydans]
          Length = 118

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 98/118 (83%), Positives = 106/118 (89%)

Query: 28  MSIITTASGLQYEEINVGAGDEAKAGSHVTVHYTGWLQNTDGTAGSKFDSSKDRNDPFAF 87
           M+  +T+SGLQYE+  VG G EA AG+HVTVHYTGWLQN DG+AG+KFDSSKDRNDPF F
Sbjct: 1   MATTSTSSGLQYEDKVVGDGAEAAAGNHVTVHYTGWLQNPDGSAGTKFDSSKDRNDPFQF 60

Query: 88  PLGAGHVIKGWDEGVQGMKVGGTRKLIIPAGLGYGARGAGGVIPPNATLIFEVELLAV 145
           PLGAGHVIKGWDEGVQGMK+GGTR LIIPA LGYGARGAGGVIPPNATLIFEVELL V
Sbjct: 61  PLGAGHVIKGWDEGVQGMKIGGTRTLIIPASLGYGARGAGGVIPPNATLIFEVELLGV 118


>emb|CBJ38867.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum CMR15]
          Length = 117

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 97/118 (82%), Positives = 104/118 (88%), Gaps = 1/118 (0%)

Query: 28  MSIITTASGLQYEEINVGAGDEAKAGSHVTVHYTGWLQNTDGTAGSKFDSSKDRNDPFAF 87
           M+I TT SGLQYE++ VG G EA AG +VTVHYTGWL   +G AG KFDSSKDRNDPFAF
Sbjct: 1   MTITTTQSGLQYEDVTVGDGAEATAGQYVTVHYTGWLYE-NGQAGRKFDSSKDRNDPFAF 59

Query: 88  PLGAGHVIKGWDEGVQGMKVGGTRKLIIPAGLGYGARGAGGVIPPNATLIFEVELLAV 145
           PLGAGHVIKGWDEGVQGMKVGGTRKLIIPA LGYGARGAGGVIPPNATL+FEV+LL V
Sbjct: 60  PLGAGHVIKGWDEGVQGMKVGGTRKLIIPAELGYGARGAGGVIPPNATLLFEVDLLEV 117


>ref|NP_518905.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Ralstonia
           solanacearum GMI1000]
 emb|CAD14486.1| probable fkbp-type peptidyl-prolyl cis-trans isomerase
           (ppiase)(immunophilin) protein [Ralstonia solanacearum
           GMI1000]
          Length = 117

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 97/118 (82%), Positives = 104/118 (88%), Gaps = 1/118 (0%)

Query: 28  MSIITTASGLQYEEINVGAGDEAKAGSHVTVHYTGWLQNTDGTAGSKFDSSKDRNDPFAF 87
           M+I TT SGLQYE++ VG G EA AG +VTVHYTGWL   +G AG KFDSSKDRNDPFAF
Sbjct: 1   MTITTTQSGLQYEDVTVGDGAEATAGKYVTVHYTGWLYE-NGQAGRKFDSSKDRNDPFAF 59

Query: 88  PLGAGHVIKGWDEGVQGMKVGGTRKLIIPAGLGYGARGAGGVIPPNATLIFEVELLAV 145
           PLGAGHVIKGWDEGVQGMKVGGTRKLIIPA LGYGARGAGGVIPPNATL+FEV+LL V
Sbjct: 60  PLGAGHVIKGWDEGVQGMKVGGTRKLIIPAELGYGARGAGGVIPPNATLLFEVDLLEV 117