BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0260.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775049.1| branched-chain amino acid ABC transporter pe... 508 e-142 ref|YP_982653.1| extracellular ligand-binding receptor [Polaromo... 333 2e-89 ref|YP_549162.1| extracellular ligand-binding receptor [Polaromo... 326 3e-87 ref|YP_003447741.1| branched-chain amino acid transport system s... 319 3e-85 ref|YP_420841.1| ABC-type branched-chain amino acid transport sy... 293 3e-77 >ref|YP_003775049.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63141.1| ABC-type branched-chain amino acid transport systems periplasmic component, protein [Herbaspirillum seropedicae SmR1] Length = 413 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 262/302 (86%), Positives = 287/302 (95%) Query: 1 MLSDVALAVAREAARSKTVLVVGDALSDAVTLDKGNRYTFRVRPSTYMLAAMLAEQAARM 60 MLSDVALAV+REAAR +TVLVVGDALSDA+TLDKGNRYTFRVRPSTYM AAMLAEQAAR+ Sbjct: 112 MLSDVALAVSREAARGRTVLVVGDALSDAITLDKGNRYTFRVRPSTYMQAAMLAEQAARL 171 Query: 61 PGRRWAMVAPNYEYGQSAVASFKMLLKQARPDVEFVSDQWPAMGKIKADDVARAIRQSRP 120 PGRRWA+VAPNYEYGQSAVASFK+LLKQARPDVEFVSDQWPA+GKIKADDVARAIRQSRP Sbjct: 172 PGRRWAVVAPNYEYGQSAVASFKLLLKQARPDVEFVSDQWPALGKIKADDVARAIRQSRP 231 Query: 121 DAIFNATFGEDLQKFVQAGNRQQLFAGVRVVSMSSAGAQSLDPSQSEAIRDWVAVGYPWD 180 D IFNATFGEDLQKFVQAGNRQQLF GVRVVSM+SAGA SLDPSQSEAIRDW+A+GYPWD Sbjct: 232 DGIFNATFGEDLQKFVQAGNRQQLFEGVRVVSMASAGAPSLDPSQSEAIRDWLAIGYPWD 291 Query: 181 QINTPEHQRFLEAYLKKFSERPQLSAVLGYSTMMAIAGGLKKSEGGDGEVLLESLRGLHW 240 Q++ PEHQRFLEAYLK+FSERPQLSAV GY+TMMAIA GLKKSEGGDGEVL+E++RGL + Sbjct: 292 QVSLPEHQRFLEAYLKRFSERPQLSAVFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQF 351 Query: 241 SSPLGELSFRALDQQSTMGAFIGLVSQKDGRSTMREWRYLDGTAYLPPPTYVRGRRPASA 300 SPLG +SFRALDQQ+++GAF+GLVSQKDGRS+MR+WRYLDG AYLPPP YVR RRPASA Sbjct: 352 GSPLGPVSFRALDQQASLGAFVGLVSQKDGRSSMRDWRYLDGAAYLPPPAYVRSRRPASA 411 Query: 301 GK 302 K Sbjct: 412 SK 413 >ref|YP_982653.1| extracellular ligand-binding receptor [Polaromonas naphthalenivorans CJ2] gb|ABM37732.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Polaromonas naphthalenivorans CJ2] Length = 411 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 164/301 (54%), Positives = 215/301 (71%) Query: 2 LSDVALAVAREAARSKTVLVVGDALSDAVTLDKGNRYTFRVRPSTYMLAAMLAEQAARMP 61 LS+V LA+A A +++ + + + L+DA+ DKGNRYTFR+RPSTYM AAML E+AA+MP Sbjct: 111 LSNVGLALADHAQKNRRLYIASEPLTDAIVWDKGNRYTFRLRPSTYMQAAMLVEEAAKMP 170 Query: 62 GRRWAMVAPNYEYGQSAVASFKMLLKQARPDVEFVSDQWPAMGKIKADDVARAIRQSRPD 121 RRWA +APNYEYGQSAVASF+ LLK RPDVEFV +QWPA+GK++A +A+ QS+PD Sbjct: 171 ARRWATIAPNYEYGQSAVASFRELLKARRPDVEFVGEQWPALGKLEAGTALQAMMQSKPD 230 Query: 122 AIFNATFGEDLQKFVQAGNRQQLFAGVRVVSMSSAGAQSLDPSQSEAIRDWVAVGYPWDQ 181 AIFN TFG DL K V+ GN++ +F V VVSM S + LD + E + W+ GYPWDQ Sbjct: 231 AIFNVTFGADLAKLVREGNQRGIFPRVPVVSMLSGEPEYLDVLKDETPKGWIVTGYPWDQ 290 Query: 182 INTPEHQRFLEAYLKKFSERPQLSAVLGYSTMMAIAGGLKKSEGGDGEVLLESLRGLHWS 241 I++ EH F Y ++F E P++ +V+GYSTM AI G+KK+ D E L+ +LRGL +S Sbjct: 291 IDSQEHASFAANYYRRFKEYPKVGSVVGYSTMQAIFAGIKKANSLDNEKLVVTLRGLKFS 350 Query: 242 SPLGELSFRALDQQSTMGAFIGLVSQKDGRSTMREWRYLDGTAYLPPPTYVRGRRPASAG 301 +P G FRA+DQQSTMGA++G + + + TM WRY DG AYLP YV+ RRPA A Sbjct: 351 TPFGPAEFRAIDQQSTMGAYVGKLDMRGNKGTMVNWRYADGKAYLPSDAYVKARRPADAM 410 Query: 302 K 302 K Sbjct: 411 K 411 >ref|YP_549162.1| extracellular ligand-binding receptor [Polaromonas sp. JS666] gb|ABE44264.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Polaromonas sp. JS666] Length = 405 Score = 326 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 162/301 (53%), Positives = 211/301 (70%) Query: 2 LSDVALAVAREAARSKTVLVVGDALSDAVTLDKGNRYTFRVRPSTYMLAAMLAEQAARMP 61 LS+V LA+A A ++K V V + L+DA+ DKGNRYTFR+RPSTYM AAML E+AA++P Sbjct: 105 LSNVGLALADHAQKNKRVYVASEPLTDALVWDKGNRYTFRLRPSTYMQAAMLVEEAAKLP 164 Query: 62 GRRWAMVAPNYEYGQSAVASFKMLLKQARPDVEFVSDQWPAMGKIKADDVARAIRQSRPD 121 RRWA +APNYEYGQSAVASFK LLK RPDVEFV +QWPA+GK+ A +A QS+PD Sbjct: 165 ARRWATIAPNYEYGQSAVASFKELLKARRPDVEFVGEQWPALGKLDAGTTLQATMQSKPD 224 Query: 122 AIFNATFGEDLQKFVQAGNRQQLFAGVRVVSMSSAGAQSLDPSQSEAIRDWVAVGYPWDQ 181 AIFN TFG DL K V+ GN++ +F VVS+ S + LD + E + W+ GYPWDQ Sbjct: 225 AIFNVTFGADLAKLVREGNQRGIFPKTPVVSLLSGEPEYLDVLKDETPKGWIVTGYPWDQ 284 Query: 182 INTPEHQRFLEAYLKKFSERPQLSAVLGYSTMMAIAGGLKKSEGGDGEVLLESLRGLHWS 241 I++ EH F Y ++F+E P++ +V+GY+TM AI +KK+ D E L+ +LRGL +S Sbjct: 285 IDSQEHASFAANYYRRFNEYPKVGSVVGYATMQAIFAAIKKANSTDNEKLVTALRGLKFS 344 Query: 242 SPLGELSFRALDQQSTMGAFIGLVSQKDGRSTMREWRYLDGTAYLPPPTYVRGRRPASAG 301 +P G FRALD QSTMGA++G + + + TM +WRY DG AYLP YV+ RRP A Sbjct: 345 TPFGPAEFRALDHQSTMGAYVGKLDLRGHKGTMVQWRYADGKAYLPSDAYVKARRPPDAM 404 Query: 302 K 302 K Sbjct: 405 K 405 >ref|YP_003447741.1| branched-chain amino acid transport system substrate-binding protein [Azospirillum sp. B510] dbj|BAI71197.1| branched-chain amino acid transport system substrate-binding protein [Azospirillum sp. B510] Length = 418 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 155/297 (52%), Positives = 211/297 (71%) Query: 2 LSDVALAVAREAARSKTVLVVGDALSDAVTLDKGNRYTFRVRPSTYMLAAMLAEQAARMP 61 S + LAVA AAR+K V + L+DA+T KGNRYTFR+RPSTYM AAML E+AA++P Sbjct: 121 FSHIGLAVADFAARNKIPFVAAEPLTDAITWSKGNRYTFRLRPSTYMQAAMLVEEAAKLP 180 Query: 62 GRRWAMVAPNYEYGQSAVASFKMLLKQARPDVEFVSDQWPAMGKIKADDVARAIRQSRPD 121 +RWA VAPNYEYGQSAVA FK +L + RPDVEFV++QWPA GK++A +A+ ++PD Sbjct: 181 AKRWATVAPNYEYGQSAVAWFKQMLSEKRPDVEFVAEQWPAQGKLEAGPTVQALAAAKPD 240 Query: 122 AIFNATFGEDLQKFVQAGNRQQLFAGVRVVSMSSAGAQSLDPSQSEAIRDWVAVGYPWDQ 181 AIFN TFG DL KFV+ G + LF +VVS+ + + L+P + EA W+ GYPWDQ Sbjct: 241 AIFNVTFGADLAKFVREGEGRGLFRNRKVVSLLTGEPEYLEPMKEEAPEGWIVTGYPWDQ 300 Query: 182 INTPEHQRFLEAYLKKFSERPQLSAVLGYSTMMAIAGGLKKSEGGDGEVLLESLRGLHWS 241 I+TP H+ F+ AY +F E P+ +++GY TM A+A G+ K++ + E ++++L GL Sbjct: 301 IDTPAHKAFVAAYTARFKESPKAGSLVGYITMKAVAAGITKAKSANAEPIVDALAGLTID 360 Query: 242 SPLGELSFRALDQQSTMGAFIGLVSQKDGRSTMREWRYLDGTAYLPPPTYVRGRRPA 298 SP+G ++FRA D Q+TMGA++G+ + KDGR TM++WRY DG YLPP R RPA Sbjct: 361 SPVGPVTFRASDHQATMGAYVGVTTVKDGRGTMKDWRYADGANYLPPDEAARKMRPA 417 >ref|YP_420841.1| ABC-type branched-chain amino acid transport systems [Magnetospirillum magneticum AMB-1] dbj|BAE50282.1| ABC-type branched-chain amino acid transport systems [Magnetospirillum magneticum AMB-1] Length = 411 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 144/296 (48%), Positives = 197/296 (66%) Query: 2 LSDVALAVAREAARSKTVLVVGDALSDAVTLDKGNRYTFRVRPSTYMLAAMLAEQAARMP 61 S + LAV+ A + K V V + L+DA+T++KGNRYTFR+RP TYM AAML +QAA++P Sbjct: 114 FSHIGLAVSDFANQRKIVFVAAEPLTDALTMEKGNRYTFRLRPGTYMQAAMLVDQAAKLP 173 Query: 62 GRRWAMVAPNYEYGQSAVASFKMLLKQARPDVEFVSDQWPAMGKIKADDVARAIRQSRPD 121 + WA VAPNYEYGQ AV FK L+ RPD+++V +QWPAMGKI +A+ ++ P+ Sbjct: 174 AKTWATVAPNYEYGQVAVKVFKELMSAKRPDIKWVDEQWPAMGKIDGGATVQALARAEPE 233 Query: 122 AIFNATFGEDLQKFVQAGNRQQLFAGVRVVSMSSAGAQSLDPSQSEAIRDWVAVGYPWDQ 181 AIFN TFG DL KF++ GN + LF VVS+ + + LDP E W+ GYPW+Q Sbjct: 234 AIFNVTFGADLTKFIREGNTRGLFKNRSVVSLLTGEPEYLDPLGDETPSGWIVSGYPWEQ 293 Query: 182 INTPEHQRFLEAYLKKFSERPQLSAVLGYSTMMAIAGGLKKSEGGDGEVLLESLRGLHWS 241 I TPEH+ FL+AY KF++ P+L +V+GY+TM A+A ++K+ D + L+ + GL Sbjct: 294 IKTPEHEAFLKAYKAKFNDYPRLGSVVGYNTMKAVAEMIRKAGSVDTDKLIAAGEGLKID 353 Query: 242 SPLGELSFRALDQQSTMGAFIGLVSQKDGRSTMREWRYLDGTAYLPPPTYVRGRRP 297 SPLG ++FRA D QSTMG +IG + KDG+ M +W Y +G YLP V RP Sbjct: 354 SPLGPITFRAEDHQSTMGGYIGKTAMKDGKGMMVDWHYANGADYLPALAEVAKARP 409