BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0259.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775047.1| ferredoxin protein [Herbaspirillum seropedic...   190   5e-47
ref|YP_001099122.1| 7-Fe ferredoxin [Herminiimonas arsenicoxydan...   182   1e-44
ref|YP_727042.1| ferredoxin [Ralstonia eutropha H16] >gi|1135273...   182   2e-44
ref|YP_584597.1| Ferredoxin [Cupriavidus metallidurans CH34] >gi...   181   3e-44
ref|YP_296493.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralston...   181   4e-44

>ref|YP_003775047.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63139.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score =  190 bits (483), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 106/107 (99%), Positives = 107/107 (100%)

Query: 1   MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60
           MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED
Sbjct: 1   MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  VPADQQQYIALNADLSRSWPSITKTKAPLPEAEEWKDKTDKLQYLQR 107
           VPADQQQYIALNA+LSRSWPSITKTKAPLPEAEEWKDKTDKLQYLQR
Sbjct: 61  VPADQQQYIALNAELSRSWPSITKTKAPLPEAEEWKDKTDKLQYLQR 107


>ref|YP_001099122.1| 7-Fe ferredoxin [Herminiimonas arsenicoxydans]
 emb|CAL60995.1| Ferredoxin-1 (Ferredoxin I) (FdI) [Herminiimonas arsenicoxydans]
          Length = 107

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 98/107 (91%), Positives = 103/107 (96%)

Query: 1   MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60
           MTHVVTDSCV CRYTDCVDVCPVDCFREGPNFL+IDPDECIDCAVCVAECPVNAIYAEED
Sbjct: 1   MTHVVTDSCVLCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  VPADQQQYIALNADLSRSWPSITKTKAPLPEAEEWKDKTDKLQYLQR 107
           VPADQQ YI LN +LSR+WPSITKTKAPLPEAEEWKDKTDKLQ+L+R
Sbjct: 61  VPADQQHYIKLNVELSRNWPSITKTKAPLPEAEEWKDKTDKLQFLKR 107


>ref|YP_727042.1| ferredoxin [Ralstonia eutropha H16]
 emb|CAJ93674.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 107

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/107 (90%), Positives = 103/107 (96%)

Query: 1   MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60
           MTHVVT+SC+RCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  VPADQQQYIALNADLSRSWPSITKTKAPLPEAEEWKDKTDKLQYLQR 107
           VP DQQQ+I LNA+L+R+WPSITKTKAPL EAEEWKD TDKLQYLQR
Sbjct: 61  VPGDQQQFINLNAELARNWPSITKTKAPLAEAEEWKDATDKLQYLQR 107


>ref|YP_584597.1| Ferredoxin [Cupriavidus metallidurans CH34]
 gb|ABF09328.1| Ferredoxin [Cupriavidus metallidurans CH34]
          Length = 107

 Score =  181 bits (459), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 97/107 (90%), Positives = 102/107 (95%)

Query: 1   MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60
           MTHVVT+SC+RCRYTDCVDVCPVDCFREGPNFL+IDPDECIDCAVCVAECPVNAIYAEED
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  VPADQQQYIALNADLSRSWPSITKTKAPLPEAEEWKDKTDKLQYLQR 107
           VP DQQQ+I LNA+LSR WPSITKTKAPL EAEEWKD TDKLQYLQR
Sbjct: 61  VPGDQQQFIELNAELSRIWPSITKTKAPLAEAEEWKDATDKLQYLQR 107


>ref|YP_296493.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 ref|YP_004686274.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cupriavidus necator
           N-1]
 gb|AAZ61649.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Ralstonia eutropha
           JMP134]
 gb|AEI77793.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cupriavidus necator
           N-1]
          Length = 107

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 97/107 (90%), Positives = 103/107 (96%)

Query: 1   MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60
           MTHVVT+SC+RCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  VPADQQQYIALNADLSRSWPSITKTKAPLPEAEEWKDKTDKLQYLQR 107
           VP DQQQ+I LNA+L+R+WPSITKTKAPL EAEEWKD TDKLQYLQR
Sbjct: 61  VPGDQQQFIDLNAELARNWPSITKTKAPLAEAEEWKDATDKLQYLQR 107