BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0256.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protein [Herbaspiri... 282 2e-74 ref|YP_001099120.1| putative electron transport complex protein:... 249 1e-64 ref|YP_001352407.1| electron transport complex protein RnfB [Jan... 246 2e-63 ref|YP_004753168.1| putative electron transport complex protein:... 240 1e-61 ref|ZP_08275218.1| putative NADH:ubiquinone oxidoreductase, subu... 206 2e-51 >ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1] gb|ADJ63134.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 182/200 (91%), Positives = 190/200 (95%) Query: 1 MAEGLASYNQCPPGGQEGVARLAQLLGKPVIPLNPANGSEQPRRLALIDEAVCIGCTLCI 60 +AEG ASYNQCPPGGQEGVARLAQLLG+PVIPLNP +GSEQPRRLA+IDEAVCIGCTLCI Sbjct: 40 IAEGRASYNQCPPGGQEGVARLAQLLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCI 99 Query: 61 QACPVDAIAGAAKQMHTVIESLCTGCDLCVAPCPVDCISMVEATPGRTGWQAWSQEQADA 120 QACPVDAIAGAAKQMHTVI++LCTGCDLCVAPCPVDCISMVE TPGRTGWQAW QEQADA Sbjct: 100 QACPVDAIAGAAKQMHTVIDALCTGCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADA 159 Query: 121 ARARHDWRTLRLQREKEENDARLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAME 180 ARARH WRT RL+R+KEENDARLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAME Sbjct: 160 ARARHAWRTQRLRRDKEENDARLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAME 219 Query: 181 RARLKKLQAEQASPQPDSPQ 200 RARLKKLQAEQAS DS Q Sbjct: 220 RARLKKLQAEQASHPTDSEQ 239 >ref|YP_001099120.1| putative electron transport complex protein: ferredoxin subunit (RfnB) [Herminiimonas arsenicoxydans] emb|CAL60993.1| Putative electron transport complex, ferredoxin subunit [Herminiimonas arsenicoxydans] Length = 239 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 146/191 (76%), Positives = 170/191 (89%) Query: 1 MAEGLASYNQCPPGGQEGVARLAQLLGKPVIPLNPANGSEQPRRLALIDEAVCIGCTLCI 60 MA+G ASYNQCPPGG EGVARLA++LGK VIP+NP NG E+PR +A+IDE++CIGCTLCI Sbjct: 46 MADGRASYNQCPPGGIEGVARLARVLGKKVIPINPVNGVERPRPVAVIDESLCIGCTLCI 105 Query: 61 QACPVDAIAGAAKQMHTVIESLCTGCDLCVAPCPVDCISMVEATPGRTGWQAWSQEQADA 120 QACPVDAI GAAKQMHT++ LCTGCDLCVAPCPVDCI+MVE TPG+TGW AWSQ +ADA Sbjct: 106 QACPVDAIVGAAKQMHTIVTDLCTGCDLCVAPCPVDCIAMVEYTPGKTGWDAWSQAEADA 165 Query: 121 ARARHDWRTLRLQREKEENDARLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAME 180 ARARHD+RTLRLQREKEEN+ARLAAKAAAKL+ +++ + EE+ E ARKKAIIQAA+E Sbjct: 166 ARARHDFRTLRLQREKEENEARLAAKAAAKLQALQSETPLSEEEKNEQARKKAIIQAAIE 225 Query: 181 RARLKKLQAEQ 191 RARLKK QAE+ Sbjct: 226 RARLKKEQAEK 236 >ref|YP_001352407.1| electron transport complex protein RnfB [Janthinobacterium sp. Marseille] gb|ABR89968.1| electron transport complex protein RnfB [Janthinobacterium sp. Marseille] Length = 233 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 149/191 (78%), Positives = 169/191 (88%) Query: 1 MAEGLASYNQCPPGGQEGVARLAQLLGKPVIPLNPANGSEQPRRLALIDEAVCIGCTLCI 60 +A+G A+YNQCPPGG EGVARLA LLGKPVIP+NP NG E+PR +A+IDE++CIGCTLCI Sbjct: 40 IADGSANYNQCPPGGIEGVARLAHLLGKPVIPINPVNGHERPRPVAVIDESLCIGCTLCI 99 Query: 61 QACPVDAIAGAAKQMHTVIESLCTGCDLCVAPCPVDCISMVEATPGRTGWQAWSQEQADA 120 QACPVDAI GAAKQMHT++ LCTGCDLCVAPCPVDCI+MVE TPG+TGW AWSQ QAD Sbjct: 100 QACPVDAIVGAAKQMHTIVNDLCTGCDLCVAPCPVDCIAMVEVTPGKTGWDAWSQAQADD 159 Query: 121 ARARHDWRTLRLQREKEENDARLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAME 180 ARARHD+RT RLQREKEENDARLAAKAAAKL+ V+A + EE+AE ARKKAIIQAA+E Sbjct: 160 ARARHDFRTQRLQREKEENDARLAAKAAAKLQAVQAETPASEEEKAEQARKKAIIQAAIE 219 Query: 181 RARLKKLQAEQ 191 RARLKK QAE+ Sbjct: 220 RARLKKEQAEK 230 >ref|YP_004753168.1| putative electron transport complex protein: ferredoxin subunit [Collimonas fungivorans Ter331] gb|AEK62345.1| putative electron transport complex protein: ferredoxin subunit [Collimonas fungivorans Ter331] Length = 302 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 149/199 (74%), Positives = 170/199 (85%), Gaps = 1/199 (0%) Query: 1 MAEGLASYNQCPPGGQEGVARLAQLLGKPVIPLNPANGSEQPRRLALIDEAVCIGCTLCI 60 +A+G A YNQCPPGGQ+GVARLAQLL +PVIPLNPANG+E+PR LA+IDEA CIGCTLCI Sbjct: 105 IADGSAGYNQCPPGGQQGVARLAQLLQQPVIPLNPANGAERPRPLAVIDEAACIGCTLCI 164 Query: 61 QACPVDAIAGAAKQMHTVIESLCTGCDLCVAPCPVDCISMVEATPGRTGWQAWSQEQADA 120 QACPVDAIAGAAKQMHTVI LCTGCDLC+APCPVDCI+MV+ + TGW AW+Q+QADA Sbjct: 165 QACPVDAIAGAAKQMHTVINDLCTGCDLCLAPCPVDCITMVDVSGTDTGWDAWTQQQADA 224 Query: 121 ARARHDWRTLRLQREKEENDARLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAME 180 ARARHD+R +RL REK END RLAAKAA KLK V A +A TPE+QAE RKKAIIQAA+E Sbjct: 225 ARARHDFRAVRLAREKRENDERLAAKAAEKLKAVAAESAATPEQQAEQQRKKAIIQAAIE 284 Query: 181 RARLKKLQAEQASPQPDSP 199 RARLKK Q + + + DSP Sbjct: 285 RARLKKEQQAEEAAK-DSP 302 >ref|ZP_08275218.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Oxalobacteraceae bacterium IMCC9480] gb|EGF31313.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 129/186 (69%), Positives = 153/186 (82%), Gaps = 1/186 (0%) Query: 1 MAEGLASYNQCPPGGQEGVARLAQLLGKPVIPLNPANGSEQPRRLALIDEAVCIGCTLCI 60 +A+G A NQCPPGGQEG+ RLA LL +PVI LNP +G E+PR +A+IDEA+CIGCTLCI Sbjct: 50 IADGSAGINQCPPGGQEGIVRLASLLDRPVIALNPVHGIERPRPVAIIDEALCIGCTLCI 109 Query: 61 QACPVDAIAGAAKQMHTVIESLCTGCDLCVAPCPVDCISMVEATPGRTGWQAWSQEQADA 120 QACPVDAI GA KQMHT++ LCTGCDLCVAPCPVDCI+MV T TGWQAW+++QAD Sbjct: 110 QACPVDAILGAPKQMHTILADLCTGCDLCVAPCPVDCIAMVAVTT-TTGWQAWTEQQADE 168 Query: 121 ARARHDWRTLRLQREKEENDARLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAME 180 ARARHD+R RL RE+ +NDARL AKAAAKLKEVE+A + + AE RKKAIIQAA+E Sbjct: 169 ARARHDFRAARLLRERRDNDARLLAKAAAKLKEVESAPTLSAADSAERDRKKAIIQAAIE 228 Query: 181 RARLKK 186 RAR+K+ Sbjct: 229 RARIKR 234