BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0255.p         (216 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775041.1| endonuclease III protein [Herbaspirillum ser...   432   e-119
ref|YP_001099119.1| DNA glycosylase/apyrimidinic (AP) lyase [Her...   378   e-103
ref|YP_001352406.1| DNA-(apurinic or apyrimidinic site) lyase [J...   376   e-102
ref|YP_004753169.1| endonuclease III [Collimonas fungivorans Ter...   359   2e-97
ref|ZP_08275219.1| Endonuclease III [Oxalobacteraceae bacterium ...   354   4e-96

>ref|YP_003775041.1| endonuclease III protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63133.1| endonuclease III protein [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 212/216 (98%), Positives = 216/216 (100%)

Query: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT
Sbjct: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60

Query: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGEVPESREALEALPGVGRK 120
           PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGG+VPESREALEALPGVGRK
Sbjct: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGQVPESREALEALPGVGRK 120

Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180
           TANVVLNTAFGHPTIAVDTHIFRVSNRTG+APGKDVDEVERKLIKFVAPEFRQDAHHWLI
Sbjct: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180

Query: 181 LHGRYTCIARKPQCWNCLIADLCEFKQKTPLPAKGV 216
           LHGRYTCIARKPQCWNC+IADLCEFKQKTPLP+KGV
Sbjct: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPSKGV 216


>ref|YP_001099119.1| DNA glycosylase/apyrimidinic (AP) lyase [Herminiimonas
           arsenicoxydans]
 emb|CAL60992.1| Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
           [Herminiimonas arsenicoxydans]
          Length = 216

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 185/216 (85%), Positives = 197/216 (91%)

Query: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MN  KRREIF RLR ANP PTTELEY TPF+LLIAVLLSAQATDVSVNKATRKLYP A T
Sbjct: 1   MNAEKRREIFNRLRAANPHPTTELEYQTPFQLLIAVLLSAQATDVSVNKATRKLYPHAGT 60

Query: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGEVPESREALEALPGVGRK 120
           P  IY +GV+ LMPYIQTIGLYRTKAKNVIETCRILI EHGGEVP +R ALEALPGVGRK
Sbjct: 61  PRKIYALGVEGLMPYIQTIGLYRTKAKNVIETCRILIAEHGGEVPRTRAALEALPGVGRK 120

Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180
           TANVV+NTAFG PTIAVDTHIFRV+NRTGIAPGK+VD VE+KL+KFVAPEFR DAHHWLI
Sbjct: 121 TANVVMNTAFGEPTIAVDTHIFRVANRTGIAPGKNVDIVEQKLMKFVAPEFRHDAHHWLI 180

Query: 181 LHGRYTCIARKPQCWNCLIADLCEFKQKTPLPAKGV 216
           LHGRYTCIAR P+CWNC+IADLCE+KQKTPLPAKGV
Sbjct: 181 LHGRYTCIARTPKCWNCIIADLCEYKQKTPLPAKGV 216


>ref|YP_001352406.1| DNA-(apurinic or apyrimidinic site) lyase [Janthinobacterium sp.
           Marseille]
 gb|ABR88317.1| DNA-(apurinic or apyrimidinic site) lyase [Janthinobacterium sp.
           Marseille]
          Length = 216

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/216 (84%), Positives = 197/216 (91%)

Query: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MN  KRREIF RLR ANP PTTELEY TPF+LLIAVLLSAQATDVSVNKATRKLYP A T
Sbjct: 1   MNAEKRREIFNRLRAANPHPTTELEYQTPFQLLIAVLLSAQATDVSVNKATRKLYPHAGT 60

Query: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGEVPESREALEALPGVGRK 120
           P+ IY +GVD L+PYIQTIGLYRTKAKNVIETCRILI EHGGEVP +RE LEALPGVGRK
Sbjct: 61  PKKIYALGVDGLIPYIQTIGLYRTKAKNVIETCRILIAEHGGEVPRTREELEALPGVGRK 120

Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180
           TANVV+NTAFG  TIAVDTHIFRVSNRTG+APGK+VD VE+KL+KFVAPEF+QDAHHWLI
Sbjct: 121 TANVVMNTAFGEATIAVDTHIFRVSNRTGLAPGKNVDIVEQKLMKFVAPEFQQDAHHWLI 180

Query: 181 LHGRYTCIARKPQCWNCLIADLCEFKQKTPLPAKGV 216
           LHGRYTCIAR P+CWNC+IADLCE+K KTPLPAKGV
Sbjct: 181 LHGRYTCIARTPKCWNCVIADLCEYKSKTPLPAKGV 216


>ref|YP_004753169.1| endonuclease III [Collimonas fungivorans Ter331]
 gb|AEK62346.1| Endonuclease III [Collimonas fungivorans Ter331]
          Length = 216

 Score =  359 bits (921), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 176/216 (81%), Positives = 189/216 (87%)

Query: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MN  KRREIF RLR A P PTTELEYTTPFELLI+V+LSAQATDVSVNKATRKLYPVANT
Sbjct: 1   MNANKRREIFTRLRAALPHPTTELEYTTPFELLISVILSAQATDVSVNKATRKLYPVANT 60

Query: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGEVPESREALEALPGVGRK 120
           P  IY +G+D L+PYIQTIGLYRTKAKNVIETCR+L+  H G+VP +RE LEALPGVGRK
Sbjct: 61  PAQIYALGIDGLIPYIQTIGLYRTKAKNVIETCRMLVALHDGQVPRTREQLEALPGVGRK 120

Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180
           TANVVLNTAFG PTIAVDTHIFRVSNRTGIAPGKDV+ VE KL+K V  EF  DAHHWLI
Sbjct: 121 TANVVLNTAFGVPTIAVDTHIFRVSNRTGIAPGKDVEAVEHKLMKLVPAEFLLDAHHWLI 180

Query: 181 LHGRYTCIARKPQCWNCLIADLCEFKQKTPLPAKGV 216
           LHGRYTCIARKP CWNC IADLC+FK KTPLP KG+
Sbjct: 181 LHGRYTCIARKPLCWNCSIADLCDFKAKTPLPEKGI 216


>ref|ZP_08275219.1| Endonuclease III [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF31314.1| Endonuclease III [Oxalobacteraceae bacterium IMCC9480]
          Length = 216

 Score =  354 bits (909), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 165/216 (76%), Positives = 188/216 (87%)

Query: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MN  KRR IFER + ANP P TEL Y+TPFELLIAVLLSAQATDV+VNKATRKL+P+A+T
Sbjct: 1   MNAEKRRLIFERWQAANPNPATELAYSTPFELLIAVLLSAQATDVAVNKATRKLFPMAST 60

Query: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGEVPESREALEALPGVGRK 120
           P AIY +GVD L+PYIQTIGL+R KAKN IETCR+++ EHGG++P  R  LEALPGVGRK
Sbjct: 61  PAAIYALGVDGLIPYIQTIGLFRNKAKNTIETCRLILTEHGGQIPRDRAGLEALPGVGRK 120

Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGIAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180
           TANVVLNTAFG PTIAVDTHIFRV NRTG+APGKDVD VE KL+KFV  EF QDAHHW+I
Sbjct: 121 TANVVLNTAFGEPTIAVDTHIFRVGNRTGLAPGKDVDVVEHKLMKFVPREFLQDAHHWMI 180

Query: 181 LHGRYTCIARKPQCWNCLIADLCEFKQKTPLPAKGV 216
           LHGRYTC+AR PQCWNC+IADLC+++ KTP+PAK V
Sbjct: 181 LHGRYTCMARSPQCWNCMIADLCDYRDKTPVPAKAV 216