BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0254.p (412 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775040.1| branched-chain amino acid ABC transporter pe... 562 e-158 ref|YP_004828750.1| Extracellular ligand-binding receptor [Enter... 299 6e-79 ref|ZP_05967743.1| putative amino acid ABC transporter, periplas... 295 7e-78 ref|YP_001454479.1| hypothetical protein CKO_02937 [Citrobacter ... 292 7e-77 ref|YP_004348442.1| extracellular ligand-binding receptor [Burkh... 287 2e-75 >ref|YP_003775040.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63132.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 394 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 291/375 (77%), Positives = 328/375 (87%), Gaps = 2/375 (0%) Query: 38 VVAPANTSAALKEEMQVDDATLLIGFAGPLSGPSMGVGRSMRNGVQLALDEANRRGVVIA 97 V A A A L + + ATL IGFAGPLSGPS GVG+SM+NGVQLAL EANRRG+ I Sbjct: 21 VGATAQPRAPLPDRQET--ATLAIGFAGPLSGPSGGVGKSMQNGVQLALAEANRRGLRIG 78 Query: 98 GKHYRIKLVAQDDRADPGTAEYVARYLVGQRVIGVVGHWTSGTSLAAAPVYHAAGVIQVT 157 GK ++++L+AQDDRADP TAE+VAR LV Q+VI VVGHWTSGTSLAAAPVYH AGVIQVT Sbjct: 79 GKSWQLRLIAQDDRADPATAEFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVT 138 Query: 158 PSAMSRKLTALSYPRIFRTIPNNESIGRWSARYAVDKLGVRSVVTIDDRTPFGQGLAEQF 217 PSAMSR+LTA+SYPRIFRTIPNNES+GR +A YAVDKL R++VTIDDRTPFGQGLAEQF Sbjct: 139 PSAMSRRLTAMSYPRIFRTIPNNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQF 198 Query: 218 AREVEAQGGKVLARYNVSDKTSDFNAPLMQARSLKPDLIFFGGLDWQAGVLAKSIRRLKL 277 AR +G +V+ RY+VSDKTSDFNA L++AR L+PDLIFFGGLDWQAGVLAKSIRRLKL Sbjct: 199 ARTASERGAQVVGRYSVSDKTSDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKL 258 Query: 278 EARLMASAGTLGLPFLMRAGPDANGALVLEPGPPEDKMPGWKSFRQRYSESFDSSIDLYS 337 ARLMAS GTLGLPFLMRAGPDANGALVLEPGPP+DKMPGWKSFRQRYSE+FDS +DLY+ Sbjct: 259 HARLMASPGTLGLPFLMRAGPDANGALVLEPGPPQDKMPGWKSFRQRYSENFDSDMDLYA 318 Query: 338 VFSYEAAQAIIEGLRRAGSIDSDAVARAMHRLRFEGVSGPVAFNEEGDLLNPGFTMYEVQ 397 VF+YEAAQAII+G+R+AGS D + +A AMHRLRFEGVSGPVAFNEEGDLL P FTMYEV+ Sbjct: 319 VFAYEAAQAIIQGIRQAGSADPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSFTMYEVK 378 Query: 398 DQRWVPVTRLHGLPR 412 DQRW PV R +GLPR Sbjct: 379 DQRWQPVARFNGLPR 393 >ref|YP_004828750.1| Extracellular ligand-binding receptor [Enterobacter asburiae LF7a] gb|AEN64965.1| Extracellular ligand-binding receptor [Enterobacter asburiae LF7a] Length = 385 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 154/355 (43%), Positives = 225/355 (63%) Query: 55 DDATLLIGFAGPLSGPSMGVGRSMRNGVQLALDEANRRGVVIAGKHYRIKLVAQDDRADP 114 D T++IG AGPL+GPS +G+ + NG QLA+D+ N++ I GK KL ++DD++DP Sbjct: 27 DSETVVIGLAGPLTGPSARIGKDLENGAQLAIDDINKQHPTIGGKAVTFKLQSEDDQSDP 86 Query: 115 GTAEYVARYLVGQRVIGVVGHWTSGTSLAAAPVYHAAGVIQVTPSAMSRKLTALSYPRIF 174 TA VA+ LV V GVVGHW +GTS+ AA VYH AG+ QV P A T + F Sbjct: 87 RTAVAVAQRLVDSGVAGVVGHWNTGTSIPAARVYHDAGIAQVAPVATGHAYTKQGFDTSF 146 Query: 175 RTIPNNESIGRWSARYAVDKLGVRSVVTIDDRTPFGQGLAEQFAREVEAQGGKVLARYNV 234 R + +++ G+++ +YAV+ L + + IDDRT FGQGLA++F + +EAQG K++ R V Sbjct: 147 RVMGHDDDGGQFAGQYAVNTLKAKRIAVIDDRTAFGQGLADEFIKSLEAQGVKIVDRQYV 206 Query: 235 SDKTSDFNAPLMQARSLKPDLIFFGGLDWQAGVLAKSIRRLKLEARLMASAGTLGLPFLM 294 DKT DF+A L RS DLIFFGG+D QA LA+ I++L + A LM + G + FL Sbjct: 207 DDKTVDFSAVLTAIRSKNADLIFFGGVDSQAAPLARRIKQLGMNATLMGAGGFVSQTFLQ 266 Query: 295 RAGPDANGALVLEPGPPEDKMPGWKSFRQRYSESFDSSIDLYSVFSYEAAQAIIEGLRRA 354 A + G + LEPG P D+MPG K+F Q Y + + I+L++ F+Y+A + ++ + +A Sbjct: 267 LAQKEGEGVVALEPGLPVDQMPGGKAFEQAYQSRYHTHIELHAPFAYDATRVLVAAMEKA 326 Query: 355 GSIDSDAVARAMHRLRFEGVSGPVAFNEEGDLLNPGFTMYEVQDQRWVPVTRLHG 409 S+D A+ + + GV+G +AF+ EG+L P FT+Y+V D +W P T L G Sbjct: 327 NSVDPSEYLPALRAINYSGVTGQIAFDNEGNLKAPSFTVYKVVDGKWQPQTVLGG 381 >ref|ZP_05967743.1| putative amino acid ABC transporter, periplasmic amino acid-binding protein [Enterobacter cancerogenus ATCC 35316] gb|EFC56733.1| putative amino acid ABC transporter, periplasmic amino acid-binding protein [Enterobacter cancerogenus ATCC 35316] Length = 385 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 152/355 (42%), Positives = 228/355 (64%) Query: 55 DDATLLIGFAGPLSGPSMGVGRSMRNGVQLALDEANRRGVVIAGKHYRIKLVAQDDRADP 114 D T++IG AGPL+GPS +G+ + NG QLA+D+ N++ I GK KL ++DD++DP Sbjct: 27 DSETVVIGLAGPLTGPSARIGKDLENGAQLAIDDINKQHPTIGGKAVTFKLQSEDDQSDP 86 Query: 115 GTAEYVARYLVGQRVIGVVGHWTSGTSLAAAPVYHAAGVIQVTPSAMSRKLTALSYPRIF 174 TA VA+ LV V GVVGHW +GTS+ AA VYH AG+ QV P A T + F Sbjct: 87 RTAVAVAQRLVDSGVAGVVGHWNTGTSIPAARVYHDAGIAQVAPVATGHAYTKQGFDTSF 146 Query: 175 RTIPNNESIGRWSARYAVDKLGVRSVVTIDDRTPFGQGLAEQFAREVEAQGGKVLARYNV 234 R + +++ G+++ +YAV+ L + + IDDRT FGQGLA++F + ++AQG K++ R V Sbjct: 147 RVMGHDDDGGQFAGQYAVNTLKAKRIAVIDDRTAFGQGLADEFIKSLDAQGVKIVDRQYV 206 Query: 235 SDKTSDFNAPLMQARSLKPDLIFFGGLDWQAGVLAKSIRRLKLEARLMASAGTLGLPFLM 294 DKT DF+A L RS DLIFFGG+D QA LA+ I++L ++A LM + G + FL Sbjct: 207 DDKTVDFSAVLTAIRSKNADLIFFGGVDSQAAPLARRIKQLGMKATLMGAGGFVSQTFLQ 266 Query: 295 RAGPDANGALVLEPGPPEDKMPGWKSFRQRYSESFDSSIDLYSVFSYEAAQAIIEGLRRA 354 A + G + LEPG P ++MPG K+F Q Y + + I+L++ F+Y+A + ++ + +A Sbjct: 267 LAQKEGEGVVALEPGLPVEQMPGGKAFEQAYQSRYHTHIELHAPFAYDATRVLVAAMEKA 326 Query: 355 GSIDSDAVARAMHRLRFEGVSGPVAFNEEGDLLNPGFTMYEVQDQRWVPVTRLHG 409 S+D A+ + + GV+G +AF++EG+L +P FT+Y+V D +W P T L G Sbjct: 327 DSVDPADYLPALRAISYSGVTGQIAFDKEGNLTSPSFTVYKVVDGKWQPQTVLGG 381 >ref|YP_001454479.1| hypothetical protein CKO_02937 [Citrobacter koseri ATCC BAA-895] gb|ABV14043.1| hypothetical protein CKO_02937 [Citrobacter koseri ATCC BAA-895] Length = 385 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 150/352 (42%), Positives = 223/352 (63%) Query: 58 TLLIGFAGPLSGPSMGVGRSMRNGVQLALDEANRRGVVIAGKHYRIKLVAQDDRADPGTA 117 T+ IG AGPL+GPS +G+ + NG QLA+D+ N++ I GK +L ++DD++DP TA Sbjct: 30 TVAIGLAGPLTGPSARIGKDLENGAQLAIDDINKQHPTIGGKAVTFRLQSEDDQSDPRTA 89 Query: 118 EYVARYLVGQRVIGVVGHWTSGTSLAAAPVYHAAGVIQVTPSAMSRKLTALSYPRIFRTI 177 VA+ LV V GVVGHW +GTS+ AA VYH AG+ QV P A T + FR + Sbjct: 90 VAVAQRLVDSGVAGVVGHWNTGTSIPAARVYHDAGIAQVAPVATGHAYTRQGFDTSFRVM 149 Query: 178 PNNESIGRWSARYAVDKLGVRSVVTIDDRTPFGQGLAEQFAREVEAQGGKVLARYNVSDK 237 +++ G+++ +YAV+ L + + IDDRT FGQGLA++F + +EAQG K++ R V DK Sbjct: 150 GHDDDGGQFAGQYAVNTLKAKRIAVIDDRTAFGQGLADEFIKSLEAQGVKIVDRQYVDDK 209 Query: 238 TSDFNAPLMQARSLKPDLIFFGGLDWQAGVLAKSIRRLKLEARLMASAGTLGLPFLMRAG 297 T DF+A L RS DLIFFGG+D QA LA+ I++L + A LM + G + FL A Sbjct: 210 TVDFSAVLTAIRSKNADLIFFGGVDSQAAPLARRIKQLGMNATLMGAGGFVSQTFLQLAQ 269 Query: 298 PDANGALVLEPGPPEDKMPGWKSFRQRYSESFDSSIDLYSVFSYEAAQAIIEGLRRAGSI 357 + G + LEPG P ++MPG K+F Q Y + + I+L++ F+Y+A + ++ + +A S+ Sbjct: 270 KEGEGVVALEPGLPVEQMPGGKAFEQEYQSRYHTHIELHAPFAYDATRVLVAAMEKADSV 329 Query: 358 DSDAVARAMHRLRFEGVSGPVAFNEEGDLLNPGFTMYEVQDQRWVPVTRLHG 409 D + + + GV+G +AF+ EG+L +P FT+Y+V D +W P T L G Sbjct: 330 DPAEYLPVLRAISYSGVTGQIAFDNEGNLKSPSFTVYKVVDGKWQPQTVLGG 381 >ref|YP_004348442.1| extracellular ligand-binding receptor [Burkholderia gladioli BSR3] gb|AEA62930.1| extracellular ligand-binding receptor [Burkholderia gladioli BSR3] Length = 399 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 153/352 (43%), Positives = 225/352 (63%) Query: 58 TLLIGFAGPLSGPSMGVGRSMRNGVQLALDEANRRGVVIAGKHYRIKLVAQDDRADPGTA 117 T+LIG A PL+GPS +G+ ++NG QLALD+ANRR I GK KLVA DD++DP TA Sbjct: 38 TVLIGLAAPLTGPSARIGKDLQNGAQLALDDANRRHPTIDGKPVVYKLVAVDDQSDPRTA 97 Query: 118 EYVARYLVGQRVIGVVGHWTSGTSLAAAPVYHAAGVIQVTPSAMSRKLTALSYPRIFRTI 177 VA+ LV Q VIGVVGHW +G S+ AA VY AG+ ++ P++ + T Y FR + Sbjct: 98 VTVAQDLVEQHVIGVVGHWNTGCSVPAARVYRDAGIPEIAPASTGHQYTQQGYATAFRIM 157 Query: 178 PNNESIGRWSARYAVDKLGVRSVVTIDDRTPFGQGLAEQFAREVEAQGGKVLARYNVSDK 237 ++++ G ++ YAV L R + +DDRT FG GLA+QF + VEA GG ++ R V+DK Sbjct: 158 GHDDTGGAYTGAYAVKTLHARRIAVLDDRTSFGSGLADQFVKGVEANGGTIVDRQYVTDK 217 Query: 238 TSDFNAPLMQARSLKPDLIFFGGLDWQAGVLAKSIRRLKLEARLMASAGTLGLPFLMRAG 297 T+DF+ L +S +PDL+FFGGLD QA +A+ + +L ++A L+ + G + FL AG Sbjct: 218 TTDFSGVLTAIKSKRPDLVFFGGLDAQAAPIARRMHQLGIDATLLGAGGFVSQTFLSLAG 277 Query: 298 PDANGALVLEPGPPEDKMPGWKSFRQRYSESFDSSIDLYSVFSYEAAQAIIEGLRRAGSI 357 D G LEPG P KMPG +F +Y + + I+L++ F+Y+AA +I ++ S Sbjct: 278 KDGEGVTALEPGRPLAKMPGGPAFDAQYRARYHAPIELHAPFAYDAAATLIAVAEQSKST 337 Query: 358 DSDAVARAMHRLRFEGVSGPVAFNEEGDLLNPGFTMYEVQDQRWVPVTRLHG 409 D + A+H++ +GV+G +AF+E+G+L +P +T+Y VQ +W V L G Sbjct: 338 DPAKLVAALHKVDRQGVTGRIAFDEQGNLKDPAYTIYRVQGGKWSVVDVLGG 389