BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0252.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775038.1| periplasmic cytochrome c553 protein [Herbasp...   187   4e-46
ref|ZP_08275630.1| putative cytochrome c [Oxalobacteraceae bacte...   137   6e-31
ref|YP_001099116.1| putative cytochrome c [Herminiimonas arsenic...   131   3e-29
ref|YP_001352403.1| cytochrome [Janthinobacterium sp. Marseille]...   125   2e-27
ref|YP_001155688.1| cytochrome c, class I [Polynucleobacter nece...   112   1e-23

>ref|YP_003775038.1| periplasmic cytochrome c553 protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63130.1| periplasmic cytochrome c553 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 117

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 102/117 (87%), Positives = 107/117 (91%)

Query: 1   MKKNLIALSLLGATALLSQAASAADVANGRALVEKYNCASCHGKDYNSPIDPGYPKLAGQ 60
           MKKNLI L LL A  L +QAA+AADVANGRAL EKYNCASCHGKDYNSP +P YPKLAGQ
Sbjct: 1   MKKNLITLCLLAAATLCTQAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQ 60

Query: 61  HADYLKHALTAYRRGDTAMNGRNNAIMSGQAKPLTDRDINDIAAYLHSLPGSLVVRK 117
           HADYLKHALTAYRRG+TAMNGRNNAIMS QAKPL+DRDINDIAAYLHSLPGSLVVRK
Sbjct: 61  HADYLKHALTAYRRGNTAMNGRNNAIMSAQAKPLSDRDINDIAAYLHSLPGSLVVRK 117


>ref|ZP_08275630.1| putative cytochrome c [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30902.1| putative cytochrome c [Oxalobacteraceae bacterium IMCC9480]
          Length = 118

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/92 (73%), Positives = 79/92 (85%)

Query: 26  VANGRALVEKYNCASCHGKDYNSPIDPGYPKLAGQHADYLKHALTAYRRGDTAMNGRNNA 85
           V NG+AL  KYNCA+CHG D+NSPIDP YPKLAGQHADYL HAL AY+RG  A+NGR+NA
Sbjct: 26  VDNGKALTAKYNCAACHGADFNSPIDPTYPKLAGQHADYLTHALVAYKRGGDALNGRSNA 85

Query: 86  IMSGQAKPLTDRDINDIAAYLHSLPGSLVVRK 117
           IM+G AKPL+ +D+ DIAAYLHSLPGSLV+ K
Sbjct: 86  IMAGMAKPLSSQDMTDIAAYLHSLPGSLVMVK 117


>ref|YP_001099116.1| putative cytochrome c [Herminiimonas arsenicoxydans]
 emb|CAL60989.1| putative cytochrome c [Herminiimonas arsenicoxydans]
          Length = 117

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/116 (56%), Positives = 90/116 (77%), Gaps = 1/116 (0%)

Query: 3   KNLIALSLLGATALLS-QAASAADVANGRALVEKYNCASCHGKDYNSPIDPGYPKLAGQH 61
           K ++AL+++  +A++S  AA+ + +  G+A V KYNCASCHG D+ +PIDPGYPKLAGQH
Sbjct: 2   KKILALAVVSLSAVVSFNAAAESKIEAGKAAVAKYNCASCHGADFQTPIDPGYPKLAGQH 61

Query: 62  ADYLKHALTAYRRGDTAMNGRNNAIMSGQAKPLTDRDINDIAAYLHSLPGSLVVRK 117
            DYLKHA+ AY+RG+   NGR+NAIM   +K L+ +DI +IA YLHSLP +LV+RK
Sbjct: 62  KDYLKHAMVAYKRGNQVSNGRSNAIMGPLSKQLSGQDIENIATYLHSLPTTLVLRK 117


>ref|YP_001352403.1| cytochrome [Janthinobacterium sp. Marseille]
 gb|ABR90447.1| cytochrome [Janthinobacterium sp. Marseille]
          Length = 117

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/116 (57%), Positives = 88/116 (75%), Gaps = 1/116 (0%)

Query: 3   KNLIALSLLGATALLSQAASA-ADVANGRALVEKYNCASCHGKDYNSPIDPGYPKLAGQH 61
           K +I+L++L  +A +S  ASA + +  G+A V K+NCASCHG D+ +PIDP YP LAGQH
Sbjct: 2   KKIISLAILSLSAAVSLNASADSKIDAGKAAVTKFNCASCHGADFKTPIDPAYPILAGQH 61

Query: 62  ADYLKHALTAYRRGDTAMNGRNNAIMSGQAKPLTDRDINDIAAYLHSLPGSLVVRK 117
            DYLKHAL +Y+RG+ A NGR+N IM   AK L+ +DI +IAAYLHSLP +LV+RK
Sbjct: 62  KDYLKHALVSYKRGNKASNGRSNPIMEPLAKQLSSQDIENIAAYLHSLPTNLVLRK 117


>ref|YP_001155688.1| cytochrome c, class I [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gb|ABP34124.1| cytochrome c, class I [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 121

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/122 (54%), Positives = 83/122 (68%), Gaps = 6/122 (4%)

Query: 1   MKKNLIALSLLGATALLSQAASAADVANGRALVEKYNCASCHGKDYNSPIDPGYPKLAGQ 60
           MK  L+   LL +  L++  A+AA +  G+ALVEK NC SCHG   N+PI P YPKLAGQ
Sbjct: 1   MKLALVTAVLLSSIGLVN-VANAASIDKGQALVEKGNCVSCHGAGLNAPIMPTYPKLAGQ 59

Query: 61  HADYLKHALTAYRRGDTA-MNGRNNAIMS----GQAKPLTDRDINDIAAYLHSLPGSLVV 115
           + DYL +AL AY  GDT  + GRNNA MS     Q  PLTD+D+ DIAAY+ SLPG+ V+
Sbjct: 60  YPDYLYYALKAYEVGDTNHLYGRNNATMSSLIKAQTTPLTDQDLRDIAAYIASLPGNFVI 119

Query: 116 RK 117
           +K
Sbjct: 120 KK 121