BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0251.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775037.1| periplasmic cytochrome c553 protein [Herbasp...   179   2e-43
ref|YP_001099115.1| putative cytochrome c [Herminiimonas arsenic...   148   2e-34
ref|YP_001352402.1| cytochrome c553 [Janthinobacterium sp. Marse...   145   2e-33
ref|YP_295247.1| cytochrome c, class I [Ralstonia eutropha JMP13...   145   2e-33
emb|CBJ38158.1| cytochrome c, class IC [Ralstonia solanacearum C...   141   4e-32

>ref|YP_003775037.1| periplasmic cytochrome c553 protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63129.1| periplasmic cytochrome c553 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 106

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 102/106 (96%), Positives = 104/106 (98%)

Query: 11  MKKHLVFLALAGVLGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGG 70
           MKKHLVFLAL GV+GSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGG
Sbjct: 1   MKKHLVFLALVGVVGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGG 60

Query: 71  QSAKYIENALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 116
           QSA YIE+ALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK
Sbjct: 61  QSAAYIESALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 106


>ref|YP_001099115.1| putative cytochrome c [Herminiimonas arsenicoxydans]
 emb|CAL60988.1| Putative cytochrome c [Herminiimonas arsenicoxydans]
          Length = 123

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/110 (72%), Positives = 92/110 (83%)

Query: 7   YPAHMKKHLVFLALAGVLGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVP 66
           + A MKK    LA AGV   A AA++VG+AKAA NKVSMCIGCH IPGYKA++PEVYQVP
Sbjct: 14  HTAIMKKLFALLAFAGVANIAVAAEVVGDAKAAANKVSMCIGCHAIPGYKATFPEVYQVP 73

Query: 67  MLGGQSAKYIENALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 116
           M+GGQS KYI +AL AY+KGER HPSM G+AAS+SDQDIAD+AAYYSQQK
Sbjct: 74  MIGGQSEKYIISALHAYKKGERNHPSMHGIAASMSDQDIADVAAYYSQQK 123


>ref|YP_001352402.1| cytochrome c553 [Janthinobacterium sp. Marseille]
 gb|ABR91511.1| cytochrome c553 [Janthinobacterium sp. Marseille]
          Length = 106

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/106 (74%), Positives = 89/106 (83%)

Query: 11  MKKHLVFLALAGVLGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGG 70
           MKK    LALAGV    +AA+IVG+AKA  NKVSMCIGCHGIPGYKA++PEVYQVPM+GG
Sbjct: 1   MKKLFALLALAGVAHITTAAEIVGDAKAGANKVSMCIGCHGIPGYKATFPEVYQVPMIGG 60

Query: 71  QSAKYIENALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 116
           QS KYI  AL AY+KG+R HPSM G+A SLSDQDIAD+AAYYSQQK
Sbjct: 61  QSDKYIAAALHAYKKGDRNHPSMRGIAESLSDQDIADVAAYYSQQK 106


>ref|YP_295247.1| cytochrome c, class I [Ralstonia eutropha JMP134]
 gb|AAZ60403.1| Cytochrome c, class I [Ralstonia eutropha JMP134]
          Length = 115

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 91/106 (85%)

Query: 11  MKKHLVFLALAGVLGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGG 70
           MKK L  + L     +A A ++ GN  AA++KV+MCIGCHGIPGY+AS+PEVY+VPMLGG
Sbjct: 1   MKKLLTMVVLGAAATAAQAQEVKGNGDAAKDKVAMCIGCHGIPGYRASFPEVYEVPMLGG 60

Query: 71  QSAKYIENALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 116
           QSAKYIENAL++YQKG+RKHP+M G+AASLSDQDIAD+AAYYSQQK
Sbjct: 61  QSAKYIENALKSYQKGDRKHPTMRGIAASLSDQDIADVAAYYSQQK 106


>emb|CBJ38158.1| cytochrome c, class IC [Ralstonia solanacearum CMR15]
          Length = 115

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/105 (73%), Positives = 88/105 (83%)

Query: 11  MKKHLVFLALAGVLGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGG 70
           MKK L  +AL  +  SASAADI GNA+A   KV+MCIGCH IP Y+ASYPEVY+VP LGG
Sbjct: 1   MKKILTMVALGALTASASAADIQGNAQAGAGKVAMCIGCHAIPDYRASYPEVYRVPYLGG 60

Query: 71  QSAKYIENALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQ 115
           Q+AKYIE+AL AY+KGERKHP+M G+A SLSDQDIADLAAYYSQQ
Sbjct: 61  QNAKYIESALNAYRKGERKHPTMRGIAGSLSDQDIADLAAYYSQQ 105