BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0247.p (389 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775031.1| hypothetical protein Hsero_1610 [Herbaspiril... 756 0.0 ref|YP_004753183.1| hypothetical protein CFU_2533 [Collimonas fu... 674 0.0 ref|YP_002980899.1| hypothetical protein Rpic12D_0927 [Ralstonia... 603 e-170 gb|AEG69670.1| conserved hypothetical protein [Ralstonia solanac... 603 e-170 ref|YP_003746277.1| hypothetical protein RCFBP_20484 [Ralstonia ... 601 e-170 >ref|YP_003775031.1| hypothetical protein Hsero_1610 [Herbaspirillum seropedicae SmR1] gb|ADJ63123.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 389 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 382/389 (98%), Positives = 387/389 (99%) Query: 1 MLIDFFYTVKQAGVPASIKEFLTLLEAMDKQVISPSLDEFYFLSRLTLVKDEAHFDKFDR 60 MLIDFFYTVKQAGVP SIKEFLTLLEAMDKQVISPSLDEFYFLSRLTLVKDEAHFDKFDR Sbjct: 1 MLIDFFYTVKQAGVPVSIKEFLTLLEAMDKQVISPSLDEFYFLSRLTLVKDEAHFDKFDR 60 Query: 61 AFGAYFKGIETIFEKRPEIPLEWLVKQLQRDLTPEQKAAIEKFGYDKLMDRLKQLLEEQK 120 AFGAYFKGIETIFEKRPEIPLEWLVKQLQRDLTPEQKAAIEKFGYDKLMDRLKQLLEEQK Sbjct: 61 AFGAYFKGIETIFEKRPEIPLEWLVKQLQRDLTPEQKAAIEKFGYDKLMDRLKQLLEEQK 120 Query: 121 ERHEGGSKWIGTGGVSPFGHGGFNPEGIRIGGKGGQRSAVKVWEEREYKDYDGERELGTR 180 ERHEGGSKWIGTGGVSPFGHGG+NPEGIRIGGKGGQRSAVKVWEER+Y+DYDGERELGTR Sbjct: 121 ERHEGGSKWIGTGGVSPFGHGGYNPEGIRIGGKGGQRSAVKVWEERQYQDYDGERELGTR 180 Query: 181 NIKVALRRLRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVGGS 240 NIKVALRRLRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVGGS Sbjct: 181 NIKVALRRLRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVGGS 240 Query: 241 MDDHIARTEELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFPTWDVLRKYTPDT 300 MDDHIARTEELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFPTWDVLRKYTPDT Sbjct: 241 MDDHIARTEELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFPTWDVLRKYTPDT 300 Query: 301 KLIFVGDATMSPYEIVQPGGSVEYNNAEAGAEWLQRFTGTFPHFVWLNPEPEGLWQYRQS 360 KLIFVGDATMSPYEIVQPGG+VEYNNAEAGAEWLQRFT TFPHFVWLNPEPEGLWQYRQS Sbjct: 301 KLIFVGDATMSPYEIVQPGGAVEYNNAEAGAEWLQRFTSTFPHFVWLNPEPEGLWQYRQS 360 Query: 361 IALIRQLMNNRMFPLTMDGLEGAMRLLSK 389 IALIRQLMN+RMFPLTMDGLEGAMRLLSK Sbjct: 361 IALIRQLMNDRMFPLTMDGLEGAMRLLSK 389 >ref|YP_004753183.1| hypothetical protein CFU_2533 [Collimonas fungivorans Ter331] gb|AEK62360.1| hypothetical protein CFU_2533 [Collimonas fungivorans Ter331] Length = 389 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 319/389 (82%), Positives = 361/389 (92%) Query: 1 MLIDFFYTVKQAGVPASIKEFLTLLEAMDKQVISPSLDEFYFLSRLTLVKDEAHFDKFDR 60 MLIDFF+T+K A +P SIKEFL LLEA+ ++VISP+LD FY+L+R TLVKDEAHFDKFD+ Sbjct: 1 MLIDFFFTLKDAKIPVSIKEFLLLLEALQRKVISPTLDNFYYLARTTLVKDEAHFDKFDQ 60 Query: 61 AFGAYFKGIETIFEKRPEIPLEWLVKQLQRDLTPEQKAAIEKFGYDKLMDRLKQLLEEQK 120 AFG YFKGI+T+FEK EIPLEWL+++++R+L+PEQ+A +EKFGYDKLM+RL++LLEEQK Sbjct: 61 AFGRYFKGIQTVFEKNAEIPLEWLIQRMKRELSPEQQAQLEKFGYDKLMERLQELLEEQK 120 Query: 121 ERHEGGSKWIGTGGVSPFGHGGFNPEGIRIGGKGGQRSAVKVWEEREYKDYDGERELGTR 180 ERHEGG+KWIGTGG SPFGHGG NPEGIRIGG GG R+AVKVW+ R Y+DYD ERELGTR Sbjct: 121 ERHEGGNKWIGTGGTSPFGHGGSNPEGIRIGGSGGNRTAVKVWDARAYRDYDDERELGTR 180 Query: 181 NIKVALRRLRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVGGS 240 NIKVALRRLR+FAREG+ EELALDDTIRATA+NAGYLDI+M+PERKN IKVLML DVGG+ Sbjct: 181 NIKVALRRLRKFAREGIAEELALDDTIRATANNAGYLDIKMRPERKNNIKVLMLLDVGGT 240 Query: 241 MDDHIARTEELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFPTWDVLRKYTPDT 300 MDDHIARTEELFSAA+TEFKNMEFFYFHNCVYDYLWKNN+RRHAERFPTWD+LRKYTPDT Sbjct: 241 MDDHIARTEELFSAAKTEFKNMEFFYFHNCVYDYLWKNNQRRHAERFPTWDILRKYTPDT 300 Query: 301 KLIFVGDATMSPYEIVQPGGSVEYNNAEAGAEWLQRFTGTFPHFVWLNPEPEGLWQYRQS 360 KLIFVGDATMSPYEI+QPGGSVEYNN EAGAEWLQRFT FP FVWLNPEPEGLWQYRQS Sbjct: 301 KLIFVGDATMSPYEILQPGGSVEYNNEEAGAEWLQRFTKAFPKFVWLNPEPEGLWQYRQS 360 Query: 361 IALIRQLMNNRMFPLTMDGLEGAMRLLSK 389 + +IRQLM+NRMFP+TMDGLE MRLLSK Sbjct: 361 VEVIRQLMSNRMFPVTMDGLERGMRLLSK 389 >ref|YP_002980899.1| hypothetical protein Rpic12D_0927 [Ralstonia pickettii 12D] gb|ACS62227.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 391 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 287/391 (73%), Positives = 337/391 (86%), Gaps = 2/391 (0%) Query: 1 MLIDFFYTVKQAGVPASIKEFLTLLEAMDKQVISPSLDEFYFLSRLTLVKDEAHFDKFDR 60 MLIDFF+T++ A +P S+KE+LTLLE + +QVI+PSLDEFYFL+R+TLVKDE HFDKFD+ Sbjct: 1 MLIDFFFTLRHAKLPVSVKEYLTLLEGLKQQVIAPSLDEFYFLARMTLVKDEKHFDKFDQ 60 Query: 61 AFGAYFKGIETIFEKRPEIPLEWLVKQLQRDLTPEQKAAIEKFG-YDKLMDRLKQLLEEQ 119 AFGAYFKG+E + R +IPL+WL K+L+R+L+PE+KA IE G DKLM+RLK+LL EQ Sbjct: 61 AFGAYFKGVEGAVDWRADIPLDWLTKKLERELSPEEKAKIEAMGGLDKLMERLKELLNEQ 120 Query: 120 KERHEGGSKWIGTGGVSPFGHGGFNPEGIRIGGKG-GQRSAVKVWEEREYKDYDGERELG 178 ERHEGG+KWIGTGG SPFGHGG+NPEGIRIGG G R+AVKVWE R YKDYD ELG Sbjct: 121 HERHEGGNKWIGTGGTSPFGHGGYNPEGIRIGGPSKGNRTAVKVWEARAYKDYDDTVELG 180 Query: 179 TRNIKVALRRLRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVG 238 TRNIKVALRRLR+FAR+G D EL LDDTI +TA+NAG LDI+M+PER N +KVLML DVG Sbjct: 181 TRNIKVALRRLRKFARDGADIELDLDDTIHSTAANAGMLDIKMRPERHNNVKVLMLMDVG 240 Query: 239 GSMDDHIARTEELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFPTWDVLRKYTP 298 GSMDDHI R EELFSAA+TEFK++E++YFHNCVY++LWKNNRRRHAERF TWDV+RKY P Sbjct: 241 GSMDDHIKRVEELFSAAKTEFKHLEYYYFHNCVYEWLWKNNRRRHAERFSTWDVIRKYPP 300 Query: 299 DTKLIFVGDATMSPYEIVQPGGSVEYNNAEAGAEWLQRFTGTFPHFVWLNPEPEGLWQYR 358 D KLIFVGDATMSPYEI+Q GGSVEYNNAEAGA WL+R FP FVWLNPEPEGLW+YR Sbjct: 301 DYKLIFVGDATMSPYEILQAGGSVEYNNAEAGATWLKRLIEQFPKFVWLNPEPEGLWEYR 360 Query: 359 QSIALIRQLMNNRMFPLTMDGLEGAMRLLSK 389 QSI++I Q+M RM+P+T+ GLE AMRLLSK Sbjct: 361 QSISVINQIMKTRMYPVTIAGLESAMRLLSK 391 >gb|AEG69670.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 391 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 286/391 (73%), Positives = 335/391 (85%), Gaps = 2/391 (0%) Query: 1 MLIDFFYTVKQAGVPASIKEFLTLLEAMDKQVISPSLDEFYFLSRLTLVKDEAHFDKFDR 60 MLIDFF+T++ A +P S+KE+LTLLE + +QVI+PSLD+FYFL+R TLVKDE H+DKFD+ Sbjct: 1 MLIDFFFTLRHAKLPVSVKEYLTLLEGLKQQVIAPSLDQFYFLARTTLVKDEKHYDKFDQ 60 Query: 61 AFGAYFKGIETIFEKRPEIPLEWLVKQLQRDLTPEQKAAIEKFG-YDKLMDRLKQLLEEQ 119 AFGAYFKG+E + R +IPL+WL K+L+R+LTPE+KA IE G DKLM+RL++LL EQ Sbjct: 61 AFGAYFKGVEGAIDWRADIPLDWLTKKLERELTPEEKARIEAMGGLDKLMERLRELLSEQ 120 Query: 120 KERHEGGSKWIGTGGVSPFGHGGFNPEGIRIGG-KGGQRSAVKVWEEREYKDYDGERELG 178 ERHEGGSKWIGTGG SPFGHGG+NPEGIRIGG G R+AVKVWE R Y+DYD ELG Sbjct: 121 HERHEGGSKWIGTGGTSPFGHGGYNPEGIRIGGPSAGNRTAVKVWEARAYRDYDDTVELG 180 Query: 179 TRNIKVALRRLRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVG 238 TRNIKVALRRLR+FAR+G D EL LDDTI ATA+NAG LDI+M+PER N +KVLML DVG Sbjct: 181 TRNIKVALRRLRKFARDGADVELDLDDTIHATAANAGLLDIKMRPERHNNVKVLMLMDVG 240 Query: 239 GSMDDHIARTEELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFPTWDVLRKYTP 298 GSMDDHI R EELFSAA+TEFK++E++YFHNCVY++LWKNNRRRHAERF TWDV+RKY P Sbjct: 241 GSMDDHIKRVEELFSAAKTEFKHLEYYYFHNCVYEWLWKNNRRRHAERFSTWDVIRKYPP 300 Query: 299 DTKLIFVGDATMSPYEIVQPGGSVEYNNAEAGAEWLQRFTGTFPHFVWLNPEPEGLWQYR 358 D KLIFVGDATMSPYEI+Q GGSVEYNN EAGA WL+R FP FVWLNPEPEGLWQYR Sbjct: 301 DYKLIFVGDATMSPYEILQAGGSVEYNNPEAGAIWLRRLVEQFPKFVWLNPEPEGLWQYR 360 Query: 359 QSIALIRQLMNNRMFPLTMDGLEGAMRLLSK 389 QSIA++ Q+M RM+P+T+ GLE AMRLLSK Sbjct: 361 QSIAVVNQIMKTRMYPVTIAGLEAAMRLLSK 391 >ref|YP_003746277.1| hypothetical protein RCFBP_20484 [Ralstonia solanacearum CFBP2957] emb|CBJ43672.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 391 Score = 601 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 285/391 (72%), Positives = 335/391 (85%), Gaps = 2/391 (0%) Query: 1 MLIDFFYTVKQAGVPASIKEFLTLLEAMDKQVISPSLDEFYFLSRLTLVKDEAHFDKFDR 60 MLIDFF+T++ A +P S+KE+LTLLE + +QVI+PSL++FYFL+R TLVKDE H+DKFD+ Sbjct: 1 MLIDFFFTLRHARLPVSVKEYLTLLEGLKQQVIAPSLEQFYFLARTTLVKDEKHYDKFDQ 60 Query: 61 AFGAYFKGIETIFEKRPEIPLEWLVKQLQRDLTPEQKAAIEKFG-YDKLMDRLKQLLEEQ 119 AFGAYFKG+E + R +IPL+WL KQL+R+LTPE+KA +E G DKLM+RLK+LL EQ Sbjct: 61 AFGAYFKGVEGAIDWRADIPLDWLTKQLERELTPEEKAKVEAMGGLDKLMERLKELLSEQ 120 Query: 120 KERHEGGSKWIGTGGVSPFGHGGFNPEGIRIGGKG-GQRSAVKVWEEREYKDYDGERELG 178 ERHEGGSKWIGTGG SPFGHGG+NPEGIRIGG G R+AVKVWE R Y+DYD ELG Sbjct: 121 HERHEGGSKWIGTGGTSPFGHGGYNPEGIRIGGPSKGNRTAVKVWEARAYRDYDDTVELG 180 Query: 179 TRNIKVALRRLRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVG 238 TRNIKVALRRLR+FAR+G D EL LDDTI ATA+NAG LDI+M+PER N +KVLML DVG Sbjct: 181 TRNIKVALRRLRKFARDGADVELDLDDTIHATAANAGLLDIKMRPERHNNVKVLMLMDVG 240 Query: 239 GSMDDHIARTEELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFPTWDVLRKYTP 298 GSMDDHI R EELFSAA+TEFK++E++YFHNCVY++LWKNNRRRHAERF TWDV+RKY P Sbjct: 241 GSMDDHIKRVEELFSAAKTEFKHLEYYYFHNCVYEWLWKNNRRRHAERFSTWDVIRKYPP 300 Query: 299 DTKLIFVGDATMSPYEIVQPGGSVEYNNAEAGAEWLQRFTGTFPHFVWLNPEPEGLWQYR 358 D KLIFVGDATMSPYEI+Q GGSVEYNN EAGA WL+R FP FVWLNPEPEGLWQYR Sbjct: 301 DYKLIFVGDATMSPYEILQAGGSVEYNNPEAGAVWLRRLVEQFPRFVWLNPEPEGLWQYR 360 Query: 359 QSIALIRQLMNNRMFPLTMDGLEGAMRLLSK 389 QSI+++ Q+M RM+P+T+ GLE AMRLLSK Sbjct: 361 QSISVVNQIMKTRMYPVTIAGLEAAMRLLSK 391