BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0244.p         (235 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP49312.1| Uvs069 [uncultured bacterium]                           75   7e-12

>gb|AAP49312.1| Uvs069 [uncultured bacterium]
          Length = 234

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 5/144 (3%)

Query: 57  PSQRLEDGTVGPVVAMATLHQLFQRALHGLQFADALLQFADVGLGQLLDLAAGARLVQPQ 116
           P +  +D  + PVV++A + ++ +R  HGL F D  LQ  D+   Q L L A  RLV P+
Sbjct: 61  PFEIGQDRAIRPVVSLAAVGEMEKRIPHGLHFGDFRLQLLDMMKRQGLHLGACPRLVVPK 120

Query: 117 PDQVAHLGHGKTQLPRLADEAQQVHVALGIDAVAGIGAAGLGDQARFFIMANHLGRDTRG 176
             +   L   K +  R A E Q V     ID V G  A    +Q    ++A+HLGR+ RG
Sbjct: 121 LQKPLRLLQRKAEAARPAHETQPVDAVRVIDPVIGSRAPRRRNQPDLLVIADHLGRNARG 180

Query: 177 SSGFSDIHVH-----FSIFAGPCG 195
             GF+D+H H      S +  PCG
Sbjct: 181 MRGFTDVHRHGLVLQVSPYLPPCG 204