BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0241.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775026.1| Pb-specific transcription regulator protein ...   239   9e-62
ref|YP_004751782.1| transcriptional regulator [Collimonas fungiv...   201   4e-50
ref|YP_001099902.1| transcriptional regulator CadR [Herminiimona...   197   4e-49
ref|YP_001353487.1| MerR family transcriptional regulator [Janth...   187   5e-46
ref|YP_001099833.1| putative regulatory protein MerR [Herminiimo...   168   2e-40

>ref|YP_003775026.1| Pb-specific transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63118.1| Pb-specific transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 150

 Score =  239 bits (610), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 136/150 (90%), Positives = 142/150 (94%)

Query: 1   MDTLKIGELAAQADCPVETIRYYEKEELLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLD 60
           MDTLKIGELAA+ADCPVET+RYYEKE LLPEPTRS +NYRLYG RHVERLQFIRHCRSLD
Sbjct: 1   MDTLKIGELAAKADCPVETVRYYEKEALLPEPTRSQANYRLYGERHVERLQFIRHCRSLD 60

Query: 61  MTLDEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRILQLQALQEQLHQLRAQCEVEQP 120
           MTLDEVRELLRLRDAPEQ+CG VNALLDKHIGHVA+RI QLQALQ QL QLRAQCEV QP
Sbjct: 61  MTLDEVRELLRLRDAPEQDCGGVNALLDKHIGHVAERIAQLQALQAQLRQLRAQCEVAQP 120

Query: 121 ARDCGILQGLASLPDDMKPANLGSHGGGCH 150
           ARDCGILQGLASLPDD+KPANLGSHGGGCH
Sbjct: 121 ARDCGILQGLASLPDDLKPANLGSHGGGCH 150


>ref|YP_004751782.1| transcriptional regulator [Collimonas fungivorans Ter331]
 gb|AEK60959.1| transcriptional regulator [Collimonas fungivorans Ter331]
          Length = 151

 Score =  201 bits (510), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 106/148 (71%), Positives = 119/148 (80%), Gaps = 1/148 (0%)

Query: 3   TLKIGELAAQADCPVETIRYYEKEELLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLDMT 62
           +LKIGELA+ A CPVETIRYYE+E LLP   RS +NYRLYG  H+ERLQFIRHCRSLDMT
Sbjct: 5   SLKIGELASHAGCPVETIRYYEREGLLPLAARSQNNYRLYGQAHIERLQFIRHCRSLDMT 64

Query: 63  LDEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRILQLQALQEQLHQLRAQCEVEQPAR 122
           LDEVR LL+ RD PE NC EVN+LLD HI HVA RI +L+ALQ QL QLR QC+  Q A+
Sbjct: 65  LDEVRRLLQFRDLPEDNCAEVNSLLDHHIEHVADRISELKALQTQLKQLRKQCQKTQAAK 124

Query: 123 DCGILQGLASLPDDMKPANLGSHGGGCH 150
           DCGILQGLA + D+  PANLGSHGGG H
Sbjct: 125 DCGILQGLADMEDE-APANLGSHGGGVH 151


>ref|YP_001099902.1| transcriptional regulator CadR [Herminiimonas arsenicoxydans]
 emb|CAL61777.1| transcriptional regulator (CadR) [Herminiimonas arsenicoxydans]
          Length = 151

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 100/150 (66%), Positives = 116/150 (77%), Gaps = 1/150 (0%)

Query: 1   MDTLKIGELAAQADCPVETIRYYEKEELLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLD 60
           +  LKIGELAAQ    VETIRYYE++ LLP+P RS  NYR+YG  HV+RLQFIRHCRSLD
Sbjct: 3   LQILKIGELAAQTGSSVETIRYYEQQNLLPQPARSAGNYRIYGEAHVKRLQFIRHCRSLD 62

Query: 61  MTLDEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRILQLQALQEQLHQLRAQCEVEQP 120
           MTLDE+R LL  RD PE+NC  VN LLDKHIGHVA RI +L+ALQ QL +LR++C   Q 
Sbjct: 63  MTLDEIRTLLNFRDTPEENCAGVNTLLDKHIGHVADRIRELKALQVQLQELRSRCLTVQS 122

Query: 121 ARDCGILQGLASLPDDMKPANLGSHGGGCH 150
            + CGILQGLA+  DD+ P NLGSH GGCH
Sbjct: 123 TQACGILQGLAN-ADDIDPRNLGSHSGGCH 151


>ref|YP_001353487.1| MerR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR90387.1| transcriptional regulator, MerR family [Janthinobacterium sp.
           Marseille]
          Length = 151

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 96/150 (64%), Positives = 113/150 (75%), Gaps = 1/150 (0%)

Query: 1   MDTLKIGELAAQADCPVETIRYYEKEELLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLD 60
           +  LKIGELA Q    VETIRYYE++ LLP+  RS SNYRLYG  HV RLQFIRHCRSLD
Sbjct: 3   LQALKIGELALQTGSSVETIRYYEQQNLLPQAMRSSSNYRLYGDEHVRRLQFIRHCRSLD 62

Query: 61  MTLDEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRILQLQALQEQLHQLRAQCEVEQP 120
           MTLDE+R LL  RD PE+NC  VN LLDKHI HV+ RI +L+ALQ +L QLR++C   Q 
Sbjct: 63  MTLDEIRTLLSFRDTPEENCAGVNTLLDKHIEHVSHRIKELKALQTELKQLRSRCLTTQT 122

Query: 121 ARDCGILQGLASLPDDMKPANLGSHGGGCH 150
             +CGILQGLA+  +D +P  LG+HGGGCH
Sbjct: 123 VEECGILQGLAN-AEDSEPKKLGTHGGGCH 151


>ref|YP_001099833.1| putative regulatory protein MerR [Herminiimonas arsenicoxydans]
 emb|CAL61706.1| Cd(II)/Pb(II)-responsive transcriptional regulator [Herminiimonas
           arsenicoxydans]
          Length = 145

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/130 (64%), Positives = 99/130 (76%)

Query: 2   DTLKIGELAAQADCPVETIRYYEKEELLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLDM 61
           + LKIGELA  A C + TIRYYE+E LL  P R+ +NYR+YG  HVERL  IRHCRSLDM
Sbjct: 4   EKLKIGELAKHAHCQIATIRYYEQEGLLSAPARNEANYRIYGREHVERLSLIRHCRSLDM 63

Query: 62  TLDEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRILQLQALQEQLHQLRAQCEVEQPA 121
           TL+E+R LLR RDAPE NCGEVN LLD HIGHVAQRI  L+AL++QL +LR  C   + A
Sbjct: 64  TLNEIRTLLRFRDAPEDNCGEVNTLLDAHIGHVAQRIASLKALEKQLKELRQLCNTTRTA 123

Query: 122 RDCGILQGLA 131
           ++CGIL  LA
Sbjct: 124 KNCGILNDLA 133