BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0238.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773711.1| transcription regulator protein [Herbaspiril... 275 5e-72 ref|YP_001352724.1| TetR family transcriptional regulator [Janth... 239 2e-61 ref|ZP_03507562.1| TetR family transcriptional regulator [Rhizob... 229 1e-58 ref|ZP_08869075.1| TetR family transcriptional regulator [Azospi... 222 3e-56 ref|YP_004354059.1| TetR family transcriptional regulator [Pseud... 216 2e-54 >ref|YP_003773711.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61803.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 210 Score = 275 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 159/207 (76%), Positives = 179/207 (86%) Query: 1 MNKPRRPEISLRKTPQQARSTELVAAILEAAVQVLLREGAPRFTTARVAERAGVSVGSVY 60 M KPRRP+ISLRK PQQARST+LV AILEAAVQVLLREGA RFTTARVAERAGVSVGS+Y Sbjct: 1 MKKPRRPDISLRKAPQQARSTDLVKAILEAAVQVLLREGAARFTTARVAERAGVSVGSIY 60 Query: 61 QYFPNKAAILFRLQADEWQQTTEMVRQLLQETDKPPARRLRELVHAFLRSEFEEAQVRMA 120 QYFPNKAAILFRLQ+DEW+QTTEMVR LL+++ KPP RLR LVHAFLRSEFEEA VR+A Sbjct: 61 QYFPNKAAILFRLQSDEWEQTTEMVRVLLEDSRKPPLLRLRALVHAFLRSEFEEAAVRLA 120 Query: 121 LADAAPLYRDAREAEEMRHDWDGIIAQFMREALPGVSAPRRKRAGELMMTTLTTAGEHLS 180 L DAAPLYRD +A+ + H WDGIIA+FMREALP VS RRK AGE++M+TLTT GEHLS Sbjct: 121 LNDAAPLYRDGEQAQALAHAWDGIIARFMREALPTVSPRRRKLAGEMVMSTLTTMGEHLS 180 Query: 181 RGTLPEKEIRAYGEAMADMFCAYLDSL 207 R P+ EI+ + +AMADMF AYLDSL Sbjct: 181 RTPRPDSEIKRHADAMADMFSAYLDSL 207 >ref|YP_001352724.1| TetR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR91408.1| transcriptional regulator, TetR family [Janthinobacterium sp. Marseille] Length = 310 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 129/207 (62%), Positives = 161/207 (77%) Query: 1 MNKPRRPEISLRKTPQQARSTELVAAILEAAVQVLLREGAPRFTTARVAERAGVSVGSVY 60 M +RP+I+ RK P+QARSTELVAAILEAA QVL +EGA RFTTARVAERAGVSVGSVY Sbjct: 102 MTDRKRPQIASRKQPKQARSTELVAAILEAATQVLAQEGAQRFTTARVAERAGVSVGSVY 161 Query: 61 QYFPNKAAILFRLQADEWQQTTEMVRQLLQETDKPPARRLRELVHAFLRSEFEEAQVRMA 120 QYFPNKAAILFRLQ DEWQQT M+R++L++T++PP RLR LVH+F+RSE +EA++R A Sbjct: 162 QYFPNKAAILFRLQTDEWQQTGGMLRRILEDTEQPPLVRLRILVHSFIRSECDEAEMRQA 221 Query: 121 LADAAPLYRDAREAEEMRHDWDGIIAQFMREALPGVSAPRRKRAGELMMTTLTTAGEHLS 180 L+DAAPLYR A EA ++R + + +FM E LP S R AG+L+ TL T G++LS Sbjct: 222 LSDAAPLYRHAPEAHDVRESTNQSVLRFMEEVLPDTSLATRLLAGDLITVTLGTVGKYLS 281 Query: 181 RGTLPEKEIRAYGEAMADMFCAYLDSL 207 + E++ YG+AMADMFC YL+SL Sbjct: 282 STSRTPGELKTYGDAMADMFCTYLESL 308 >ref|ZP_03507562.1| TetR family transcriptional regulator [Rhizobium etli Brasil 5] Length = 224 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 136/209 (65%), Positives = 157/209 (75%) Query: 1 MNKPRRPEISLRKTPQQARSTELVAAILEAAVQVLLREGAPRFTTARVAERAGVSVGSVY 60 M R IS RK P+QARSTELVAAIL+AA QVL REGA RFTTARVAERAGVS+GS+Y Sbjct: 1 MTDRPRARISSRKQPKQARSTELVAAILDAAAQVLAREGAHRFTTARVAERAGVSIGSLY 60 Query: 61 QYFPNKAAILFRLQADEWQQTTEMVRQLLQETDKPPARRLRELVHAFLRSEFEEAQVRMA 120 QYFPNKAAILFRLQ+DEW+QTT+M+ +L ET +PP RLR LVHA+LRSE EEA +R+A Sbjct: 61 QYFPNKAAILFRLQSDEWRQTTDMLSGILAETQRPPLDRLRSLVHAYLRSECEEAAMRVA 120 Query: 121 LADAAPLYRDAREAEEMRHDWDGIIAQFMREALPGVSAPRRKRAGELMMTTLTTAGEHLS 180 L DAAPLYRDA EA+ R D II FM+EALPGV R AG+L++TTL T G+ S Sbjct: 121 LHDAAPLYRDAPEAQAARASADRIIELFMQEALPGVPEATRALAGDLIVTTLATVGKQFS 180 Query: 181 RGTLPEKEIRAYGEAMADMFCAYLDSLQP 209 EI Y EAMADMFC YL +L+P Sbjct: 181 EAPRSLDEIGTYAEAMADMFCGYLGALRP 209 >ref|ZP_08869075.1| TetR family transcriptional regulator [Azospirillum amazonense Y2] gb|EGY01337.1| TetR family transcriptional regulator [Azospirillum amazonense Y2] Length = 214 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 130/201 (64%), Positives = 154/201 (76%) Query: 7 PEISLRKTPQQARSTELVAAILEAAVQVLLREGAPRFTTARVAERAGVSVGSVYQYFPNK 66 P IS RK PQQARS LVA ILEAAVQVL +EGA RFTTARVAE+AGVSVGS+YQYFPNK Sbjct: 7 PRISSRKQPQQARSAGLVATILEAAVQVLAKEGAARFTTARVAEKAGVSVGSLYQYFPNK 66 Query: 67 AAILFRLQADEWQQTTEMVRQLLQETDKPPARRLRELVHAFLRSEFEEAQVRMALADAAP 126 AAILFRLQ+DEW+QT +M+R +L++ +PP RLR LVHAFL+SE EEA +R ALADAAP Sbjct: 67 AAILFRLQSDEWRQTADMLRAILEDRARPPLDRLRTLVHAFLKSECEEAAMRGALADAAP 126 Query: 127 LYRDAREAEEMRHDWDGIIAQFMREALPGVSAPRRKRAGELMMTTLTTAGEHLSRGTLPE 186 LYRDA EA+E R D ++A FMREALP + R AG+L+ TT++ G+ S + Sbjct: 127 LYRDAPEAKEARGSADDVVAAFMREALPNATDAVRAMAGDLIKTTVSQVGKDYSETPRTD 186 Query: 187 KEIRAYGEAMADMFCAYLDSL 207 EI Y +AMADMFCAYL SL Sbjct: 187 AEISTYADAMADMFCAYLCSL 207 >ref|YP_004354059.1| TetR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69055.1| putative transcriptional regulator, TetR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 217 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 128/208 (61%), Positives = 160/208 (76%) Query: 1 MNKPRRPEISLRKTPQQARSTELVAAILEAAVQVLLREGAPRFTTARVAERAGVSVGSVY 60 M++ P+IS RK PQQARSTELVAA+LEAAVQVL +GA RFT ARVAERAGVSVGSVY Sbjct: 1 MSERSSPQISSRKQPQQARSTELVAAVLEAAVQVLATQGAARFTVARVAERAGVSVGSVY 60 Query: 61 QYFPNKAAILFRLQADEWQQTTEMVRQLLQETDKPPARRLRELVHAFLRSEFEEAQVRMA 120 QYFPNKAAILFRLQ+DEW+QT++M+R++L+++ +PP RLR LV AF++SE +EAQ+R+A Sbjct: 61 QYFPNKAAILFRLQSDEWRQTSDMLREILEDSRQPPFERLRSLVRAFIQSECDEAQIRVA 120 Query: 121 LADAAPLYRDAREAEEMRHDWDGIIAQFMREALPGVSAPRRKRAGELMMTTLTTAGEHLS 180 L DAAPLYRDA E + R + FM +ALP V A R AG+L++TTL+T G+ S Sbjct: 121 LNDAAPLYRDAPEHQAARMSVQQSVDAFMLQALPAVPAQARALAGDLVITTLSTVGKRFS 180 Query: 181 RGTLPEKEIRAYGEAMADMFCAYLDSLQ 208 E+ Y +AMADMFCAYL+SLQ Sbjct: 181 SAPRSPVEVAVYSDAMADMFCAYLESLQ 208