BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0237.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773712.1| major facilitator superfamily permease [Herb... 516 e-144 ref|YP_004354060.1| membrane protein [Pseudomonas brassicacearum... 417 e-114 ref|YP_004235102.1| major facilitator superfamily protein [Acido... 347 2e-93 ref|YP_004489925.1| major facilitator superfamily protein [Delft... 322 8e-86 gb|EFV82340.1| hypothetical protein HMPREF0005_00705 [Achromobac... 309 6e-82 >ref|YP_003773712.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ61804.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 368/404 (91%), Positives = 386/404 (95%) Query: 1 MSASSTDKPARVTPLASPGVAVFFKLAPITLAVFIAFLTIGLQLPVLPLHLKEALGMNAT 60 MSASSTDKPARVTPLASPGVAVFFKLAPITLAVFIAFLTIGLQLPVLPLHLK+ALGMNAT Sbjct: 1 MSASSTDKPARVTPLASPGVAVFFKLAPITLAVFIAFLTIGLQLPVLPLHLKDALGMNAT 60 Query: 61 VVGVVVGAQFAAALLSRAWAGNVADLRGAKRAVMAGFITAALSGLVYLASLALLGRPDWS 120 VVGVVVGAQFAAALLSRAWAGN ADLRGAKRAVMAGFITAALSGLVYLASLALLGRPDWS Sbjct: 61 VVGVVVGAQFAAALLSRAWAGNFADLRGAKRAVMAGFITAALSGLVYLASLALLGRPDWS 120 Query: 121 VAVLLAGRVLLALGESLVITGTMGWGIALVGPQHGGKVMAWLGIALYAAFGAGAPLGVAI 180 VAVLL GRV+LALGESL++TG M WGI LVGPQHGGKVMAWLGIALYAAFGAGAPLGVAI Sbjct: 121 VAVLLLGRVVLALGESLMVTGAMSWGIGLVGPQHGGKVMAWLGIALYAAFGAGAPLGVAI 180 Query: 181 NQIYGFAGISLASVGLSLAALLLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAFSSVG 240 NQIYGFAGISLASVGLSLAALLLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAFSSVG Sbjct: 181 NQIYGFAGISLASVGLSLAALLLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAFSSVG 240 Query: 241 FGVITAFIALLFAARSWGDSSLAFTSFGVAFILARLFFAHLPDQIGGAKVALVCVVIEVC 300 FGVITAFIALLFAAR+WG+++LAF++FG AFILARL FAHLPD++GGA+VALVCV+IE Sbjct: 241 FGVITAFIALLFAARAWGNAALAFSAFGAAFILARLLFAHLPDKLGGARVALVCVLIEAA 300 Query: 301 GQLLIWQADSAWMAYAGAALTGFGYSLVFPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSL 360 GQLLIWQAD+A AY GAALTGFGYSL FPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSL Sbjct: 301 GQLLIWQADAAHWAYLGAALTGFGYSLAFPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSL 360 Query: 361 GITSPLAGALASHAGVQSVYLAGAVVVGLSMLVALSLLRPMKNG 404 GITSPLAG LASHAGVQS+YLAGAV VGLS+LVALSLL +K G Sbjct: 361 GITSPLAGVLASHAGVQSIYLAGAVTVGLSVLVALSLLHSVKMG 404 >ref|YP_004354060.1| membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69056.1| Conserved hypothetical protein, membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 408 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 271/404 (67%), Positives = 324/404 (80%) Query: 1 MSASSTDKPARVTPLASPGVAVFFKLAPITLAVFIAFLTIGLQLPVLPLHLKEALGMNAT 60 M+ + + A + P AS V KL P+TL VFI FLT+G+QLPVLPLHL + LGM Sbjct: 1 MTQKNVHQGASLAPQASADVKPVLKLLPLTLTVFIGFLTLGMQLPVLPLHLHDTLGMGTL 60 Query: 61 VVGVVVGAQFAAALLSRAWAGNVADLRGAKRAVMAGFITAALSGLVYLASLALLGRPDWS 120 V+G+VVGAQFAAALLSRAWAGN AD+RG KRAVM G +TAA+SGLVYL SLA + P S Sbjct: 61 VIGLVVGAQFAAALLSRAWAGNFADMRGGKRAVMVGLVTAAVSGLVYLLSLAFVATPVTS 120 Query: 121 VAVLLAGRVLLALGESLVITGTMGWGIALVGPQHGGKVMAWLGIALYAAFGAGAPLGVAI 180 V +LL GRVLLALGESL++TG +GWGI LVG QH GKVMAW GIA+Y A+ GAPLGVA+ Sbjct: 121 VWLLLGGRVLLALGESLIVTGALGWGIDLVGAQHAGKVMAWNGIAMYGAYALGAPLGVAL 180 Query: 181 NQIYGFAGISLASVGLSLAALLLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAFSSVG 240 N +GF GI++A++ + L AL ++A +RA+AP+A RR PFY+VLGAVW PG+GLAF SVG Sbjct: 181 NSGWGFTGIAVATIFIPLLALAIVAGVRAVAPTATRRAPFYKVLGAVWVPGMGLAFCSVG 240 Query: 241 FGVITAFIALLFAARSWGDSSLAFTSFGVAFILARLFFAHLPDQIGGAKVALVCVVIEVC 300 FGVITAFIALLFAAR WG++SLAFT+FG+AFI ARL F HLPD+IGGA+VALVCVVIE Sbjct: 241 FGVITAFIALLFAARDWGNASLAFTAFGLAFIGARLLFGHLPDKIGGARVALVCVVIEAV 300 Query: 301 GQLLIWQADSAWMAYAGAALTGFGYSLVFPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSL 360 GQLLIW AD+A +AY GAAL GFGYSL FPGFGVEA++RAP Q R LAMGAYVAFLD+SL Sbjct: 301 GQLLIWGADTALVAYLGAALPGFGYSLAFPGFGVEAVKRAPAQNRSLAMGAYVAFLDISL 360 Query: 361 GITSPLAGALASHAGVQSVYLAGAVVVGLSMLVALSLLRPMKNG 404 G++SPLAGALA G+ +VYL GAV V L+ +VAL+L+ P G Sbjct: 361 GLSSPLAGALAGTWGIGAVYLGGAVTVMLAFVVALALVMPGMQG 404 >ref|YP_004235102.1| major facilitator superfamily protein [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46535.1| major facilitator superfamily MFS_1 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 400 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 253/385 (65%), Positives = 301/385 (78%), Gaps = 1/385 (0%) Query: 14 PLASPGVAVFFKLAPITLAVFIAFLTIGLQLPVLPLHLKEALGMNATVVGVVVGAQFAAA 73 P A+ VF +L P+ LAVFI F+TIGL +PVLPLHL LG+ A VGV+VGAQF AA Sbjct: 13 PGAAVPARVFIRLLPLALAVFIGFITIGLPMPVLPLHLSRHLGLGALGVGVLVGAQFVAA 72 Query: 74 LLSRAWAGNVADLRGAKRAVMAGFITAALSGLVYLASLALLGRPDWSVAVLLAGRVLLAL 133 LLSRAWAG +AD RG +RA++AG + AA SGL YL SL+ P +V LLAGR+LL Sbjct: 73 LLSRAWAGTLADTRGTRRAMVAGLLVAAASGLAYLVSLSFGNTPA-AVWTLLAGRLLLGC 131 Query: 134 GESLVITGTMGWGIALVGPQHGGKVMAWLGIALYAAFGAGAPLGVAINQIYGFAGISLAS 193 ESLV+TG +GWGIA VGPQH GKVMAW+GIA+Y A+ AGAP GVA++ +GF GI++A+ Sbjct: 132 AESLVVTGALGWGIAQVGPQHAGKVMAWVGIAMYGAYAAGAPAGVAVDARWGFTGIAVAT 191 Query: 194 VGLSLAALLLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAFSSVGFGVITAFIALLFA 253 + LAAL ++A L A+ P+AHRRTPFY+VLGAVW PGLGLA SS GFGVIT F ALLFA Sbjct: 192 ALIPLAALAVVAGLPAMPPAAHRRTPFYKVLGAVWLPGLGLALSSTGFGVITTFAALLFA 251 Query: 254 ARSWGDSSLAFTSFGVAFILARLFFAHLPDQIGGAKVALVCVVIEVCGQLLIWQADSAWM 313 AR WG +SLAFT+FG+AFI ARL F HLPD++GGA+VAL C+++EV GQLL+W AD + Sbjct: 252 ARGWGPASLAFTAFGLAFIGARLLFGHLPDRLGGARVALACILVEVLGQLLLWGADGLPV 311 Query: 314 AYAGAALTGFGYSLVFPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSLGITSPLAGALASH 373 A AGAALTGFGYSL FP FGVEA+RRAP RG+AMGAYVAFLD+SLGIT P AG LA+ Sbjct: 312 AAAGAALTGFGYSLAFPAFGVEAVRRAPSHARGMAMGAYVAFLDISLGITGPAAGLLAAA 371 Query: 374 AGVQSVYLAGAVVVGLSMLVALSLL 398 GV SVYLAGAV V LS+ VAL LL Sbjct: 372 HGVGSVYLAGAVAVALSLAVALCLL 396 >ref|YP_004489925.1| major facilitator superfamily protein [Delftia sp. Cs1-4] gb|AEF91570.1| major facilitator superfamily MFS_1 [Delftia sp. Cs1-4] Length = 402 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 237/382 (62%), Positives = 288/382 (75%), Gaps = 1/382 (0%) Query: 16 ASPGVAVFFKLAPITLAVFIAFLTIGLQLPVLPLHLKEALGMNATVVGVVVGAQFAAALL 75 ASP V F +L P+TLAVF++FL +G+ +PVLPLHL + LG+ VG V+G QFAAALL Sbjct: 11 ASPPVNAFARLLPLTLAVFVSFLCLGMPMPVLPLHLSQTLGLGTLGVGTVMGCQFAAALL 70 Query: 76 SRAWAGNVADLRGAKRAVMAGFITAALSGLVYLASLALLGRPDWSVAVLLAGRVLLALGE 135 SRAWAG++AD RGA+RAV+ G + AA SG+ YL S A G +V VL AGRV+L E Sbjct: 71 SRAWAGSLADTRGARRAVVLGMLLAAASGVAYLMSRAFEG-GQAAVWVLAAGRVMLGCAE 129 Query: 136 SLVITGTMGWGIALVGPQHGGKVMAWLGIALYAAFGAGAPLGVAINQIYGFAGISLASVG 195 SL+ITG + WG+ ++GPQH GKVMAW+GIA+Y A+ AGAP GVA+ +GF+GI++A++ Sbjct: 130 SLIITGALSWGMGMIGPQHAGKVMAWVGIAMYGAYAAGAPAGVAVQAAWGFSGIAVATIV 189 Query: 196 LSLAALLLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAFSSVGFGVITAFIALLFAAR 255 L L AL ++ LRA +A RRTPFY+VLG VW PGLGLA SS GFGVIT F ALLFA+R Sbjct: 190 LPLVALAMVWGLRATPAAAQRRTPFYKVLGTVWLPGLGLALSSAGFGVITTFAALLFASR 249 Query: 256 SWGDSSLAFTSFGVAFILARLFFAHLPDQIGGAKVALVCVVIEVCGQLLIWQADSAWMAY 315 WG +SLAFT+FG+AFI ARLFF HLPD++GG +VAL + +E G LLIW A AY Sbjct: 250 GWGAASLAFTAFGLAFIGARLFFGHLPDKLGGVRVALASIPLEAAGLLLIWGGGDAAWAY 309 Query: 316 AGAALTGFGYSLVFPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSLGITSPLAGALASHAG 375 AGAALTGFGYSL FP FGVEA+RRAPPQ RG AMGAYVAF DLS+G+T+P AG LAS G Sbjct: 310 AGAALTGFGYSLAFPAFGVEAVRRAPPQARGAAMGAYVAFFDLSMGLTAPAAGLLASVTG 369 Query: 376 VQSVYLAGAVVVGLSMLVALSL 397 V VY A AV V LS+ VAL L Sbjct: 370 VGDVYFAAAVSVALSIAVALLL 391 >gb|EFV82340.1| hypothetical protein HMPREF0005_00705 [Achromobacter xylosoxidans C54] Length = 402 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 206/376 (54%), Positives = 271/376 (72%) Query: 22 VFFKLAPITLAVFIAFLTIGLQLPVLPLHLKEALGMNATVVGVVVGAQFAAALLSRAWAG 81 VF ++ P+ LAVF+ F +GL +PVLPL++ L A VVG+V G QFAAALLSRAW+G Sbjct: 20 VFMQILPLALAVFVGFFMVGLPMPVLPLYVDGVLAQGALVVGIVAGLQFAAALLSRAWSG 79 Query: 82 NVADLRGAKRAVMAGFITAALSGLVYLASLALLGRPDWSVAVLLAGRVLLALGESLVITG 141 ++AD RGA+RAV+ GF+ +++GL YL + A +P ++A L+AGR L+ ESL++TG Sbjct: 80 SLADRRGARRAVVTGFLLGSVAGLFYLLADAQAEQPRAALAALMAGRALMGCAESLIVTG 139 Query: 142 TMGWGIALVGPQHGGKVMAWLGIALYAAFGAGAPLGVAINQIYGFAGISLASVGLSLAAL 201 + WG+ VGPQ+ G+VMAW+G+A+YAAFG GAP G+ + GF GI+ A+V + + AL Sbjct: 140 ALSWGVGRVGPQNAGRVMAWIGVAIYAAFGLGAPAGMRLYGAAGFEGIAWATVFIPVLAL 199 Query: 202 LLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAFSSVGFGVITAFIALLFAARSWGDSS 261 L+ P R + + RTPFY+VLG V PGLGLA +SVGFGVITAFI+LLFA R W ++ Sbjct: 200 ALVLPQRGVPAAGGVRTPFYRVLGMVMLPGLGLALTSVGFGVITAFISLLFAQRGWDGAA 259 Query: 262 LAFTSFGVAFILARLFFAHLPDQIGGAKVALVCVVIEVCGQLLIWQADSAWMAYAGAALT 321 F+ FGV FI+ARLFFA LPD++GGA+VALVCV+IE GQ LIW + A+AGA L+ Sbjct: 260 WMFSLFGVGFIVARLFFAGLPDKLGGARVALVCVLIEAAGQWLIWMGPTPAWAFAGALLS 319 Query: 322 GFGYSLVFPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSLGITSPLAGALASHAGVQSVYL 381 G GYSL FP FGVEA+RR PP +RG AMGAYVAFLD++LGI SP AG LA G +VY Sbjct: 320 GAGYSLAFPAFGVEAVRRVPPASRGAAMGAYVAFLDVALGIASPAAGWLAGMRGYGAVYA 379 Query: 382 AGAVVVGLSMLVALSL 397 G ++ VA++L Sbjct: 380 LGGACALGAVFVAMAL 395