BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0236.p (367 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773718.1| diguanylate cyclase [Herbaspirillum seropedi... 541 e-152 ref|YP_004156094.1| diguanylate cyclase with gaf sensor [Variovo... 235 8e-60 ref|YP_003685819.1| diguanylate cyclase [Meiothermus silvanus DS... 205 1e-50 ref|YP_002462145.1| GAF sensor-containing diguanylate cyclase [C... 205 1e-50 emb|CBA29266.1| hypothetical protein Csp_A11280 [Curvibacter put... 201 1e-49 >ref|YP_003773718.1| diguanylate cyclase [Herbaspirillum seropedicae SmR1] gb|ADJ61810.1| diguanylate cyclase protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 271/367 (73%), Positives = 299/367 (81%), Gaps = 9/367 (2%) Query: 1 MNIRDLHAQYTPERSIFKRTQAAHRAMTDNASQRIELAHTDSDADAWLEPALSDFISLAS 60 M IR+ PER+ R+ + RI+LA+ ADAWLEP L+DFISLA+ Sbjct: 1 MTIRNFFPPTQPERA---------RSQRGLSGSRIDLANAGGQADAWLEPTLADFISLAT 51 Query: 61 SVCGTPMGMFSQLHADIGLQHPYLSVNNGRGDARNQWWRFPGQTGVMRNAVDFSLCETAA 120 S+C PMGM SQLHADIG+QHP++S+ NGRGD RNQWWRFPGQ GV R VDFSLCE AA Sbjct: 52 SLCSMPMGMVSQLHADIGMQHPFVSIVNGRGDRRNQWWRFPGQNGVARTVVDFSLCEYAA 111 Query: 121 RTPGQITEVNDLSSDLRFATSALARGNPAVRFYAGVPLVSGNGDILGTLCVMDRVPRTLT 180 R PGQ+TE++DL +D RF SALA GNP VRFYA VPLVS NGDI GTLCVMDR R LT Sbjct: 112 RRPGQLTEISDLQADQRFCDSALANGNPRVRFYAAVPLVSSNGDIFGTLCVMDREARVLT 171 Query: 181 PAQRDAFQKLARQLEAQIDSHRAMQKLEQQTMTDALTGIGNRRSFDSRLREEWTRHLRNA 240 AQRDAF KL RQLE Q+++ RAMQKLEQQT+TDALTGIGNRRSFD RLREEWTRHLRNA Sbjct: 172 AAQRDAFLKLGRQLEGQLEARRAMQKLEQQTLTDALTGIGNRRSFDLRLREEWTRHLRNA 231 Query: 241 RPLTMLMVDVDYFKQYNDTYGHPAGDALLVQLARVLRSPLRASDFLARYGGDEFSLILPD 300 RPL++LMVDVDYFKQYNDTYGHPAGDALL QL RVLRSPLRASDFLARYGGDEFSLILPD Sbjct: 232 RPLSLLMVDVDYFKQYNDTYGHPAGDALLTQLGRVLRSPLRASDFLARYGGDEFSLILPD 291 Query: 301 TDETGAMQVSERIKQSVARVKWPHTDIEISLGAATVTPSEMCDFSALLHAADQAMYQRKH 360 TDE GA+QV+ERIK +V + W H DIEISLGAATVTPSEMCDFSALL AADQAMY+RKH Sbjct: 292 TDEIGALQVAERIKAAVEQAHWEHCDIEISLGAATVTPSEMCDFSALLQAADQAMYRRKH 351 Query: 361 GRTLRHA 367 GR RHA Sbjct: 352 GREPRHA 358 >ref|YP_004156094.1| diguanylate cyclase with gaf sensor [Variovorax paradoxus EPS] gb|ADU37983.1| diguanylate cyclase with GAF sensor [Variovorax paradoxus EPS] Length = 356 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 131/339 (38%), Positives = 189/339 (55%), Gaps = 20/339 (5%) Query: 30 NASQRIELAHTDSDADAWLEPALSDFISLASSVCGTPMGMFSQLHADIGLQHPYLSVNNG 89 N QR+ H D E A D +LAS+VC TP+ + S + D Sbjct: 31 NEEQRLAALHRYQVLDTTAEQAYDDVTTLASAVCKTPIALISLIDQD------------- 77 Query: 90 RGDARNQWWRFPGQTGVMRNAVDFSLCETAARTPGQITEVNDLSSDLRFATSALARGNPA 149 QW++ GV + + C A P ++ EV D D RFA S L G P Sbjct: 78 -----RQWFKSRVGLGVSETPRELAFCAHAILQPDEVFEVRDAQLDPRFAGSPLVTGEPG 132 Query: 150 VRFYAGVPLVSGNGDILGTLCVMDRVPRTLTPAQRDAFQKLARQLEAQIDSHRAMQKLEQ 209 +RFYAG PLV+ +G +GT+CV+DR PR L ++R A Q LARQ+ AQ++ AM LE Sbjct: 133 IRFYAGAPLVTADGLPIGTVCVIDREPRALAASERKALQSLARQVVAQLELRHAMAGLEL 192 Query: 210 QTMTDALTGIGNRRSFDSRLREEWTRHLRNARPLTMLMVDVDYFKQYNDTYGHPAGDALL 269 ++MTD LT + NRRS D RL W H+R A PL++LM+D+D+FK+ ND +GHP GD +L Sbjct: 193 ESMTDPLTSLWNRRSLDRRLHAAWNLHVREAAPLSLLMIDLDHFKRINDAHGHPTGDRVL 252 Query: 270 VQLARVLRSPLRASDFLARYGGDEFSLILPDTDETGAMQVSERIKQSVARVKWPHTDIEI 329 VQ A ++R + AR+GG+EF ++LP D A Q +E++++++ WP + Sbjct: 253 VQAAAIIRDQIGHDGLAARFGGEEFCVVLPGMDAGTAQQRAEQLRRALEDASWPDVKVTA 312 Query: 330 SLGAATVTPSEMCDFSALLHAADQAMY-QRKHGRT-LRH 366 S+G AT T E + +L AD+A+Y ++ GR +RH Sbjct: 313 SIGVATATADEDGSPNVMLTRADRALYVAKRDGRNRVRH 351 >ref|YP_003685819.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] gb|ADH64311.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] Length = 343 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 125/329 (37%), Positives = 185/329 (56%), Gaps = 34/329 (10%) Query: 45 DAWLEPALSDFISLASSVCGTPMGMFSQLHADIGLQHPYLSVNNGRGDARNQWWRFPGQT 104 D E A D LA+ + TP+ + S + D + QW++ Sbjct: 23 DTLPESAYDDLALLAAHIGRTPIALISFI------------------DRQRQWFKSAQGL 64 Query: 105 GVMRNAVDFSLCETAARTPGQITEVNDLSSDLRFATSALARGNPAVRFYAGVPLVSGNGD 164 + + S C A G +T V+D D RFA L G P +RFYAG PL++ NG+ Sbjct: 65 EIHEIPREASFCAHAILQHG-VTVVSDAWQDERFADHPLVVGEPKIRFYAGAPLITPNGE 123 Query: 165 ILGTLCVMDRVPRTLTPAQRDAFQKLARQLEAQIDSHRAMQK-------LEQQTMT---- 213 LGT+CVMDR PR + ++ A LARQ+ AQ++ R +++ LE+ Sbjct: 124 ALGTVCVMDRQPRQMEEEEQKALAALARQVMAQLELRREIRERQRYQELLEEANARLKVL 183 Query: 214 ---DALTGIGNRRSFDSRLREEWTRHLRNARPLTMLMVDVDYFKQYNDTYGHPAGDALLV 270 D LTG+ NRR +RL+EE+ R LR +PL++LM+DVD FK+YNDTYGH AGD +L Sbjct: 184 ADHDELTGLYNRRVLMARLKEEFHRALRYDQPLSLLMIDVDGFKEYNDTYGHSAGDEVLQ 243 Query: 271 QLARVLRSPLRASDFLARYGGDEFSLILPDTDETGAMQVSERIKQSVARVKWPHTDIEIS 330 Q+A ++ LRA D ARYGG+EF+++LP+T TGA+ ++ER++Q++ R WP + IS Sbjct: 244 QVAYRIKMMLRAGDLPARYGGEEFAVVLPNTTLTGAVALAERLRQAIERAPWPLRPLTIS 303 Query: 331 LGAATVTPSEMCDFSALLHAADQAMYQRK 359 +G A T + + L+ AD+A+Y+ K Sbjct: 304 VGVAAQTAAAE-EPHTLIATADEALYEAK 331 >ref|YP_002462145.1| GAF sensor-containing diguanylate cyclase [Chloroflexus aggregans DSM 9485] gb|ACL23709.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM 9485] Length = 367 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 51/360 (14%) Query: 30 NASQRIELAHTDSDADAWLEPALSDFISLASSVCGTPMGMFSQLHADIGLQHPYLSVNNG 89 N ++R+ + D E D + LA+ +C TPM + + + D Sbjct: 19 NETERLRELESYHILDTLPEQFYEDIVRLAAYICQTPMALVNLIDRD------------- 65 Query: 90 RGDARNQWWRFPGQTGVMRNAVD--FSLCETAARTPGQITEVNDLSSDLRFATSALARGN 147 QW + + G + VD + C P + V D + D RFA + G+ Sbjct: 66 -----RQWSK--ARLGFTDSEVDRKLAFCSYTINYPDDVFVVPDATCDERFAHNPFVCGD 118 Query: 148 PAVRFYAGVPLVSGNGDILGTLCVMDRVPRTLTPAQRDAFQKLARQLEAQIDSHRAMQKL 207 P +RFYAG PLV+ NG LGT+CV+D P LTP Q + + LARQ+ Q++ R + L Sbjct: 119 PYIRFYAGAPLVTPNGYALGTVCVVDVRPHRLTPEQIEMLRVLARQVVRQLELRRDVLAL 178 Query: 208 EQQTMT----------------------------DALTGIGNRRSFDSRLREEWTRHLRN 239 EQ+ +T D LTG+ NRR F+ RL+EE R LR Sbjct: 179 EQRLLTNEQEKLSLRAYLLSIEAQLAQAQQQALTDPLTGLLNRRGFEQRLQEEIDRSLRY 238 Query: 240 ARPLTMLMVDVDYFKQYNDTYGHPAGDALLVQLARVLRSPLRASDFLARYGGDEFSLILP 299 P+ +LMVD+D+FK NDT+GH AGD +L +A++LR +R D +ARYGG+EF++ILP Sbjct: 239 NVPMALLMVDIDHFKAINDTFGHVAGDEILRMVAQLLRENVRRHDIVARYGGEEFAVILP 298 Query: 300 DTDETGAMQVSERIKQSVARVKWPHTDIEISLGAATVTPSEMCDFSALLHAADQAMYQRK 359 T G + ERI+++V + WP+ + IS+G A + M + + LL AAD A+Y K Sbjct: 299 ATGFEGTPILGERIRRAVQQAAWPYVPVTISVGGACCDAT-MTNATDLLTAADHALYDAK 357 >emb|CBA29266.1| hypothetical protein Csp_A11280 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 359 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 128/358 (35%), Positives = 186/358 (51%), Gaps = 52/358 (14%) Query: 34 RIELAHTDSDADAWLEPALSDFISLASSVCGTPMGMFSQLHADIGLQHPYLSVNNGRGDA 93 RIE + + D E A D +SLAS +C TP+ + S + D Sbjct: 12 RIEDLRSFNILDTPAEQAYDDVVSLASFICDTPIALISLVDED----------------- 54 Query: 94 RNQWWRFPGQTGVMRNAVDFSLCETAARTPGQITEVNDLSSDLRFATSALARGNPAVRFY 153 QW++ M + C A P ++ EV D D RF + L G+P +RFY Sbjct: 55 -RQWFKARLGLSAMETPRGQAFCAHAIVDPDRVMEVPDALQDARFVDNPLVTGDPGIRFY 113 Query: 154 AGVPLVSGNGDILGTLCVMDRVPRTLTPAQRDAFQKLARQL------------------- 194 AG PL++ +G LGT+CV+D+VPR LT Q +A Q L+RQ+ Sbjct: 114 AGAPLLTPSGAALGTVCVIDKVPRKLTERQSEALQALSRQVVQLLALRRANAELELVAKA 173 Query: 195 ----EAQIDSHRAM-----QKLEQQTMTDALTGIGNRRSFDSRLREEWTRHLRNARPLTM 245 + Q+++H+ Q L++QT+TD LT + NRR+FD+ L E+ R R+ PL + Sbjct: 174 QTLRQQQLENHQRRIEELNQDLQEQTLTDPLTALKNRRAFDTLLANEFARSQRSKSPLCL 233 Query: 246 LMVDVDYFKQYNDTYGHPAGDALLVQLARVLRSPLRASDFLARYGGDEFSLILPDTDETG 305 LMVD D+FK YND +GH AGD L+ ++ ++S RA D +ARYGG+EF +ILPDT Sbjct: 234 LMVDADHFKAYNDAFGHVAGDQALMFVSLAIKSQARAYDHVARYGGEEFCVILPDTKLNE 293 Query: 306 AMQVSERIKQSVARVKWPHTDIEISLGAATV--TPSEMCDFSALLHAADQAMYQRKHG 361 A+ V+ERI++S+ + + S+G A PS L+ AD+AMY K G Sbjct: 294 ALVVAERIRESIKSIIGLRRPMTGSIGVAYSEGVPSP----KRLVELADRAMYLAKQG 347