BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0235.p (136 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001142991.1| hypothetical protein ASA_3253 [Aeromonas sal... 98 5e-19 ref|YP_004393814.1| hypothetical protein B565_3162 [Aeromonas ve... 97 8e-19 ref|YP_001901756.1| hypothetical protein xccb100_0350 [Xanthomon... 96 1e-18 ref|YP_855589.1| hypothetical protein AHA_1047 [Aeromonas hydrop... 94 6e-18 ref|YP_001566317.1| hypothetical protein Daci_5303 [Delftia acid... 92 2e-17 >ref|YP_001142991.1| hypothetical protein ASA_3253 [Aeromonas salmonicida subsp. salmonicida A449] gb|ABO91243.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 133 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 2/132 (1%) Query: 1 MSTQPKAGAVLFAKDVARLAAFYAQVLAVVPKQAQAEKVVIEAEDFLLVIHAIPQASAAT 60 M +AGA+++A+D+ L FY +L + + +A VV+E D L+IHAIP++ A Sbjct: 1 MPGPARAGALIYARDLGLLTHFYRTLLQMDIRSQEAGLVVMENHDIQLLIHAIPESIACD 60 Query: 61 VEITSPPVLRENVPVKLFLPVRSLTHARLATQQLGGGMKAAEAEWSGPDFRACDGFDPEG 120 ++I PP+LRE +KLF V SL A LGGG+ +W GP + FDPEG Sbjct: 61 IDIQVPPILREEGAIKLFFTVPSLAWAEAKAADLGGGL--LPQQWQGPGLVLRNAFDPEG 118 Query: 121 NVVQFREFLREP 132 N++Q RE L P Sbjct: 119 NILQLRELLTTP 130 >ref|YP_004393814.1| hypothetical protein B565_3162 [Aeromonas veronii B565] gb|AEB51197.1| hypothetical protein B565_3162 [Aeromonas veronii B565] Length = 133 Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 56/132 (42%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Query: 1 MSTQPKAGAVLFAKDVARLAAFYAQVLAVVPKQAQAEKVVIEAEDFLLVIHAIPQASAAT 60 M +AGA+++AKD L FY +L +V + VV+E D L+IHAIP+ A Sbjct: 1 MPGPARAGALIYAKDPGLLTHFYRTLLQMVVCSQDEQLVVLENSDIQLLIHAIPEPYAGQ 60 Query: 61 VEITSPPVLRENVPVKLFLPVRSLTHARLATQQLGGGMKAAEAEWSGPDFRACDGFDPEG 120 V I PP LRE +KLF V SL A LGGG+ +W+GP F + FDPEG Sbjct: 61 VVIKRPPALREEGAIKLFFTVSSLAWAEAKAADLGGGL--LPQQWTGPGFVVRNAFDPEG 118 Query: 121 NVVQFREFLREP 132 N++Q RE L P Sbjct: 119 NILQLRELLGSP 130 >ref|YP_001901756.1| hypothetical protein xccb100_0350 [Xanthomonas campestris pv. campestris str. B100] emb|CAP49681.1| hypothetical protein xcc-b100_0350 [Xanthomonas campestris pv. campestris] Length = 201 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 55/127 (43%), Positives = 73/127 (57%), Gaps = 2/127 (1%) Query: 1 MSTQPKAGAVLFAKDVARLAAFYAQVLAVVPKQAQAEKVVIEAEDFLLVIHAIPQASAAT 60 MS +G ++AKD+ R+AAFY +VL + + E VV+ A LVIHA+P+A AA+ Sbjct: 74 MSQAASSGLFIYAKDLERVAAFYQRVLGMQAIHSSKELVVLNAAALQLVIHAVPEAIAAS 133 Query: 61 VEITSPPVLRENVPVKLFLPVRSLTHARLATQQLGGGMKAAEAEWSGPDFRACDGFDPEG 120 + I PP REN +K F V S+ LGG + A+W GP F AC+ DPEG Sbjct: 134 ITIADPPNRRENTALKFFFTVPSIAQLVELAAALGG--EILPAQWRGPGFVACNAVDPEG 191 Query: 121 NVVQFRE 127 NV Q RE Sbjct: 192 NVSQLRE 198 >ref|YP_855589.1| hypothetical protein AHA_1047 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gb|ABK36660.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 133 Score = 94.4 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 2/132 (1%) Query: 1 MSTQPKAGAVLFAKDVARLAAFYAQVLAVVPKQAQAEKVVIEAEDFLLVIHAIPQASAAT 60 M +AGA+++A+D L+ FY +L + + E +V E D L++HAIP A Sbjct: 1 MPGPARAGALIYARDPGLLSHFYRTLLQMEIRSQSDELIVQENADIQLLLHAIPAPYAEQ 60 Query: 61 VEITSPPVLRENVPVKLFLPVRSLTHARLATQQLGGGMKAAEAEWSGPDFRACDGFDPEG 120 V IT+PP LRE +KLF V SL A LGGG+ +WSGP F + FDPEG Sbjct: 61 VVITTPPQLREQGAIKLFFTVPSLAWAEAKAADLGGGL--LPQQWSGPGFVVRNAFDPEG 118 Query: 121 NVVQFREFLREP 132 N++Q REF+ P Sbjct: 119 NILQLREFIGVP 130 >ref|YP_001566317.1| hypothetical protein Daci_5303 [Delftia acidovorans SPH-1] ref|YP_004486697.1| hypothetical protein DelCs14_1310 [Delftia sp. Cs1-4] gb|ABX37932.1| conserved hypothetical protein [Delftia acidovorans SPH-1] gb|AEF88342.1| hypothetical protein DelCs14_1310 [Delftia sp. Cs1-4] Length = 129 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 56/129 (43%), Positives = 72/129 (55%), Gaps = 2/129 (1%) Query: 1 MSTQPKAGAVLFAKDVARLAAFYAQVLAVVPKQAQAEKVVIEAEDFLLVIHAIPQASAAT 60 MS AG ++AK RLA FY +VLA+ +E +V+++ D LV+HAIP+A A Sbjct: 1 MSGPASAGLFIYAKQPDRLALFYMEVLAMRMLHHTSELMVLQSPDLQLVLHAIPEAIARH 60 Query: 61 VEITSPPVLRENVPVKLFLPVRSLTHARLATQQLGGGMKAAEAEWSGPDFRACDGFDPEG 120 + IT PP RENV +K F V S R GG + E W GP FR C+ DPEG Sbjct: 61 ITITEPPQPRENVALKFFATVTSFAAVRPLVIAHGGQL--WEQSWQGPGFRVCNAMDPEG 118 Query: 121 NVVQFREFL 129 N+ Q RE L Sbjct: 119 NLFQLREPL 127