BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0234.p         (50 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775023.1| copper tolerance protein [Herbaspirillum ser...    76   2e-12
ref|ZP_02500934.1| outer membrane efflux protein [Burkholderia p...    59   3e-07
ref|ZP_04522685.1| copper tolerance protein [Burkholderia pseudo...    59   3e-07
ref|ZP_02450391.1| outer membrane efflux protein [Burkholderia p...    59   3e-07
ref|ZP_02474092.1| outer membrane efflux protein [Burkholderia p...    59   3e-07

>ref|YP_003775023.1| copper tolerance protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63115.1| copper tolerance protein [Herbaspirillum seropedicae SmR1]
          Length = 461

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/50 (88%), Positives = 46/50 (92%)

Query: 1   MLISVFALLADAREQAATVNAAIDAQRDFWIADASLQQALGGRPQPGKQP 50
           ML+SVF LLADAREQAATVNAAI+AQRDFWIADASLQ ALGGRP  GKQP
Sbjct: 412 MLVSVFILLADAREQAATVNAAIEAQRDFWIADASLQLALGGRPTQGKQP 461


>ref|ZP_02500934.1| outer membrane efflux protein [Burkholderia pseudomallei 112]
          Length = 461

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 37/49 (75%)

Query: 1   MLISVFALLADAREQAATVNAAIDAQRDFWIADASLQQALGGRPQPGKQ 49
           ML+SVF LLADAR+Q   VNA IDA +D+W+A A LQQA+GGR   G Q
Sbjct: 408 MLVSVFELLADARDQIGAVNAYIDALKDYWLAQADLQQAMGGRLPRGAQ 456


>ref|ZP_04522685.1| copper tolerance protein [Burkholderia pseudomallei MSHR346]
 gb|EEP51599.1| copper tolerance protein [Burkholderia pseudomallei MSHR346]
          Length = 554

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 37/49 (75%)

Query: 1   MLISVFALLADAREQAATVNAAIDAQRDFWIADASLQQALGGRPQPGKQ 49
           ML+SVF LLADAR+Q   VNA IDA +D+W+A A LQQA+GGR   G Q
Sbjct: 408 MLVSVFELLADARDQIGAVNAYIDALKDYWLAQADLQQAMGGRLPRGAQ 456


>ref|ZP_02450391.1| outer membrane efflux protein [Burkholderia pseudomallei 91]
          Length = 466

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 37/49 (75%)

Query: 1   MLISVFALLADAREQAATVNAAIDAQRDFWIADASLQQALGGRPQPGKQ 49
           ML+SVF LLADAR+Q   VNA IDA +D+W+A A LQQA+GGR   G Q
Sbjct: 408 MLVSVFELLADARDQIGAVNAYIDALKDYWLAQADLQQAMGGRLPRGAQ 456


>ref|ZP_02474092.1| outer membrane efflux protein [Burkholderia pseudomallei B7210]
          Length = 467

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 37/49 (75%)

Query: 1   MLISVFALLADAREQAATVNAAIDAQRDFWIADASLQQALGGRPQPGKQ 49
           ML+SVF LLADAR+Q   VNA IDA +D+W+A A LQQA+GGR   G Q
Sbjct: 408 MLVSVFELLADARDQIGAVNAYIDALKDYWLAQADLQQAMGGRLPRGAQ 456