BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0232.p         (96 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775021.1| signal peptide protein [Herbaspirillum serop...   111   3e-23
gb|ABC26899.1| hypothetical protein [Herbaspirillum seropedicae]       88   4e-16
ref|YP_004156529.1| hypothetical protein Varpa_4248 [Variovorax ...    81   5e-14
ref|YP_001019690.1| hypothetical protein Mpe_A0493 [Methylibium ...    74   5e-12
ref|ZP_02405778.1| hypothetical protein BpseD_26244 [Burkholderi...    73   2e-11

>ref|YP_003775021.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63113.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 96

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/96 (68%), Positives = 76/96 (79%)

Query: 1  MLRSLLLTTALCLTALAAHAQGDAPKVDGEIRKVDISTGKLTIRHAEIPNLQMGGMTMVF 60
          MLR   L  AL L+  AA AQ  APKVDG+IRK+D + GKLTIRH EI NLQM  MTMVF
Sbjct: 1  MLRLFPLLAALFLSMPAAQAQDSAPKVDGQIRKIDAAAGKLTIRHGEIANLQMPAMTMVF 60

Query: 61 KADPEILARAREGEKISFTADRVDGALTVTSLEEKR 96
          +A PEI+ +AREGE++ FTADR+DGALTVTSLEEKR
Sbjct: 61 RAAPEIVGQAREGEQVRFTADRIDGALTVTSLEEKR 96


>gb|ABC26899.1| hypothetical protein [Herbaspirillum seropedicae]
          Length = 67

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 53/65 (81%)

Query: 17 AAHAQGDAPKVDGEIRKVDISTGKLTIRHAEIPNLQMGGMTMVFKADPEILARAREGEKI 76
          AA AQ  APKVDG+IRK+D + GKLTIRH EI NLQM  MTMVF+A PEI+ +AREGE++
Sbjct: 3  AAQAQDSAPKVDGQIRKIDAAAGKLTIRHGEIANLQMPAMTMVFRAAPEIVGQAREGEQV 62

Query: 77 SFTAD 81
           FTAD
Sbjct: 63 RFTAD 67


>ref|YP_004156529.1| hypothetical protein Varpa_4248 [Variovorax paradoxus EPS]
 gb|ADU38418.1| hypothetical protein Varpa_4248 [Variovorax paradoxus EPS]
          Length = 98

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 55/68 (80%), Gaps = 1/68 (1%)

Query: 27 VDGEIRKVDISTGKLTIRHAEIPNLQMGGMTMVFKA-DPEILARAREGEKISFTADRVDG 85
          V+GE+RK+D    K+T+ H +IPNL+M GMTMVF+  DPE+L++ + G+K+ FTAD+VDG
Sbjct: 26 VEGEVRKIDTDAKKITLEHGDIPNLEMTGMTMVFRVKDPELLSKVKPGDKVRFTADKVDG 85

Query: 86 ALTVTSLE 93
          ALTV S+E
Sbjct: 86 ALTVLSIE 93


>ref|YP_001019690.1| hypothetical protein Mpe_A0493 [Methylibium petroleiphilum PM1]
 gb|ABM93455.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 94

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 22 GDAPKVDGEIRKVDISTGKLTIRHAEIPNLQMGGMTMVFKA-DPEILARAREGEKISFTA 80
          G  P +DGE+RKVD +  K+T++H EI +L M  M+MVF+  DP +LA+ + G+K+ F+ 
Sbjct: 19 GAQPLIDGEVRKVDAAQNKITLKHGEIAHLDMPPMSMVFQVKDPALLAKVKAGDKVRFSV 78

Query: 81 DRVDGALTVTSLE 93
          DR+DG  TVT++E
Sbjct: 79 DRIDGVYTVTAIE 91


>ref|ZP_02405778.1| hypothetical protein BpseD_26244 [Burkholderia pseudomallei DM98]
 ref|ZP_02492741.1| hypothetical protein BpseN_25071 [Burkholderia pseudomallei NCTC
           13177]
 ref|ZP_04891971.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gb|EDU06661.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
          Length = 118

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 9/83 (10%)

Query: 21  QGDAPKV--------DGEIRKVDISTGKLTIRHAEIPNLQMGGMTMVFKA-DPEILARAR 71
           QG AP+          GE++KVD + GKLTI+H  + NL MG MTMVFK  DP +L++ +
Sbjct: 35  QGSAPQAGAAHVGMSHGEVKKVDTAAGKLTIKHGPLENLGMGAMTMVFKVKDPAMLSQVK 94

Query: 72  EGEKISFTADRVDGALTVTSLEE 94
            G+ I F AD VDGALTV  L++
Sbjct: 95  AGDTIDFVADEVDGALTVVKLQK 117