BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0230.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773720.1| 5-carboxymethyl-2-hydroxymuconate delta-isom...   176   1e-42
ref|YP_002871141.1| hypothetical protein PFLU1499 [Pseudomonas f...   115   3e-24
ref|YP_258613.1| 5-carboxymethyl-2-hydroxymuconate delta isomera...   108   4e-22
ref|YP_347116.1| 5-carboxymethyl-2-hydroxymuconate isomerase [Ps...   103   9e-21
ref|ZP_07774089.1| 5-carboxymethyl-2-hydroxymuconate isomerase [...   101   3e-20

>ref|YP_003773720.1| 5-carboxymethyl-2-hydroxymuconate delta-isomerase [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61812.1| 5-carboxymethyl-2-hydroxymuconate delta-isomerase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 119

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/118 (78%), Positives = 108/118 (91%)

Query: 1   MPHLVLEYTGNLALDVQPTLLKLNQALVASGHFEENAIKARAVRLDNYLVGTAPEAKRAF 60
           MPHLV+EYTGNL++DVQPTLLKLNQALVASGHFEENAIKARAVRL NYLVGT  +A+R F
Sbjct: 1   MPHLVMEYTGNLSIDVQPTLLKLNQALVASGHFEENAIKARAVRLQNYLVGTDTQAQRGF 60

Query: 61  VAVRLAILTGRTLEDKKQVSDLLGAALQKDQNWPKDLQVQLTVEVVDMQRESYFKLAL 118
           VA+RLAILTGR+LEDKKQ+SDLLGAA+++D   P D QVQ+TVEV DMQRESY+K++L
Sbjct: 61  VALRLAILTGRSLEDKKQISDLLGAAMRQDLALPADTQVQITVEVADMQRESYYKVSL 118


>ref|YP_002871141.1| hypothetical protein PFLU1499 [Pseudomonas fluorescens SBW25]
 emb|CAY47748.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 120

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/120 (55%), Positives = 92/120 (76%), Gaps = 3/120 (2%)

Query: 1   MPHLVLEYTGNLA-LDVQPTLLKLNQALVASGHF-EENAIKARAVRLDNYLVGTAPEAKR 58
           MPHL LEYT NL  L V+ TLL+LN  L+ASG F  E  IK+RAV+++ +LVGT+  + R
Sbjct: 1   MPHLHLEYTANLTNLAVEKTLLRLNNVLMASGQFGSEFDIKSRAVKVETFLVGTSL-SPR 59

Query: 59  AFVAVRLAILTGRTLEDKKQVSDLLGAALQKDQNWPKDLQVQLTVEVVDMQRESYFKLAL 118
            F+AVRL++L+GR+ + KKQ+S+ L AALQ   +WP D+QVQL+V+V+DM RESY K+A+
Sbjct: 60  GFMAVRLSLLSGRSPQVKKQLSESLLAALQDLGDWPADIQVQLSVQVIDMDRESYSKVAI 119


>ref|YP_258613.1| 5-carboxymethyl-2-hydroxymuconate delta isomerase [Pseudomonas
           fluorescens Pf-5]
 gb|AAY90769.1| 5-carboxymethyl-2-hydroxymuconate delta isomerase [Pseudomonas
           fluorescens Pf-5]
          Length = 121

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/120 (54%), Positives = 84/120 (70%), Gaps = 3/120 (2%)

Query: 1   MPHLVLEYTGNLA-LDVQPTLLKLNQALVASGHF-EENAIKARAVRLDNYLVGTAPEAKR 58
           MPHL +EYT NL  LDV   LL+LN  LVASG F +E  IK+RAV+++ + VGT    +R
Sbjct: 1   MPHLHMEYTANLPQLDVDKALLRLNHGLVASGQFSDEFDIKSRAVKVEAFRVGTGI-GER 59

Query: 59  AFVAVRLAILTGRTLEDKKQVSDLLGAALQKDQNWPKDLQVQLTVEVVDMQRESYFKLAL 118
            FV V+LA+L+GR+ E KKQ+S+ L A LQ    WP D+QVQL VE+VD+ R SY K A+
Sbjct: 60  GFVHVKLALLSGRSPEVKKQLSESLLAVLQDLAPWPADVQVQLCVEIVDIDRASYSKAAV 119


>ref|YP_347116.1| 5-carboxymethyl-2-hydroxymuconate isomerase [Pseudomonas
           fluorescens Pf0-1]
 gb|ABA73127.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 121

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 63/120 (52%), Positives = 85/120 (70%), Gaps = 3/120 (2%)

Query: 1   MPHLVLEYTGNLA-LDVQPTLLKLNQALVASGHF-EENAIKARAVRLDNYLVGTAPEAKR 58
           MPHL LEYT NL  L+    L++LN  LV SG F  E  IK+RA +++ + VGTA   +R
Sbjct: 1   MPHLHLEYTANLPQLNADVALIRLNNTLVGSGQFGAEFDIKSRAFKVETFKVGTAMN-ER 59

Query: 59  AFVAVRLAILTGRTLEDKKQVSDLLGAALQKDQNWPKDLQVQLTVEVVDMQRESYFKLAL 118
           AFVAVRLA+L+GR+ E KKQ+S  L A LQ+   WP  ++VQL+VE++D+ RESY K+A+
Sbjct: 60  AFVAVRLALLSGRSPEIKKQLSQSLLAVLQELCEWPAGVEVQLSVELLDIDRESYSKVAI 119


>ref|ZP_07774089.1| 5-carboxymethyl-2-hydroxymuconate isomerase [Pseudomonas
           fluorescens WH6]
 gb|EFQ64853.1| 5-carboxymethyl-2-hydroxymuconate isomerase [Pseudomonas
           fluorescens WH6]
          Length = 121

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/120 (53%), Positives = 84/120 (70%), Gaps = 3/120 (2%)

Query: 1   MPHLVLEYTGNLA-LDVQPTLLKLNQALVASGHF-EENAIKARAVRLDNYLVGTAPEAKR 58
           MPHL LEYT NL  LD    LL+LN ALVASG F  E  IK+RAV++D++ VGT    +R
Sbjct: 1   MPHLHLEYTANLTQLDTDKALLRLNHALVASGQFGAEFDIKSRAVKVDSFRVGTGLN-ER 59

Query: 59  AFVAVRLAILTGRTLEDKKQVSDLLGAALQKDQNWPKDLQVQLTVEVVDMQRESYFKLAL 118
            FVA RLA+L+GR+ + K+Q+S  L A LQ    WP+ +QVQL+VE+ DM R++Y K A+
Sbjct: 60  GFVAARLALLSGRSPQVKQQLSQSLLAVLQDLGPWPEGVQVQLSVELRDMDRDTYSKEAV 119