BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0228.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773722.1| hypothetical protein Hsero_0288 [Herbaspiril... 319 3e-85 ref|YP_002872365.1| putative DNA-binding protein [Pseudomonas fl... 241 7e-62 ref|ZP_08874833.1| putative DNA-binding protein [Verminephrobact... 239 3e-61 ref|YP_002498361.1| YheO domain-containing protein [Methylobacte... 237 1e-60 ref|YP_004350200.1| hypothetical protein bgla_2g22540 [Burkholde... 229 3e-58 >ref|YP_003773722.1| hypothetical protein Hsero_0288 [Herbaspirillum seropedicae SmR1] gb|ADJ61814.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 319 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 165/195 (84%), Positives = 178/195 (91%) Query: 4 MNSRSRKKKKPDRPDHALLLSQLQQVAQGLGETFAPFCEVVLHDLRDADHSIVALHNNLS 63 M SR RKK+ PDRPDHALLLSQLQQ+AQGLG+TFAPFCEVVLHDLR ADHS+VAL+NNLS Sbjct: 1 MKSRPRKKRVPDRPDHALLLSQLQQIAQGLGDTFAPFCEVVLHDLRHADHSVVALYNNLS 60 Query: 64 GREVGDATTELGLARIADESYPQVLTNYANTLPDGRQAKSTSIGIKDADGKYVAALCMNI 123 GREVGD TTELGLARIADESYPQVL+NYANTLPDGRQ KSTSIGIKD DGKYVAALC+NI Sbjct: 61 GREVGDPTTELGLARIADESYPQVLSNYANTLPDGRQTKSTSIGIKDVDGKYVAALCLNI 120 Query: 124 DLTLFGALQGMLRQFGGIDQGVRVAETLEPAGAEGLRSRIDAFAARLSTTPRSLKAEDRR 183 DLTLFGALQGML QFG D VRVAE+LEPAGA+ LR+ IDAFAARLSTTPRSLK E+RR Sbjct: 121 DLTLFGALQGMLNQFGHTDGAVRVAESLEPAGADALRNHIDAFAARLSTTPRSLKTEERR 180 Query: 184 QLMRELRQSGCLDIR 198 LMRELRQ+G LD+R Sbjct: 181 ALMRELRQNGGLDVR 195 >ref|YP_002872365.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] emb|CAY49014.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 208 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 121/186 (65%), Positives = 149/186 (80%), Gaps = 1/186 (0%) Query: 13 KPDRPDHALLLSQLQQVAQGLGETFAPFCEVVLHDLRDADHSIVALHNNLSGREVGDATT 72 K P+ L+SQL+Q+A+GL +TF+PFCEVVLHDLRD H+I+A+HNNLSGR+ GD T Sbjct: 2 KKTLPEDTHLISQLEQIAEGLSKTFSPFCEVVLHDLRDPQHAILAIHNNLSGRQPGDPAT 61 Query: 73 ELGLARIADESYPQVLTNYANTLPDGRQAKSTSIGIKDADGKYVAALCMNIDLTLFGALQ 132 ELGLARIAD YPQV+ NY N DGRQ KSTSIGIKDA G+YVAALCMN+DL+LF LQ Sbjct: 62 ELGLARIADPEYPQVIANYQNQFADGRQVKSTSIGIKDARGQYVAALCMNVDLSLFRGLQ 121 Query: 133 GMLRQFGGIDQGVRVAETLEPAGAEGLRSRIDAFAARLSTTPRSLKAEDRRQLMRELRQS 192 GML QFG + G E+L+P+GA+ +R+RID FAARL+TTPR+LK DRR LMREL+ + Sbjct: 122 GMLEQFGSV-SGDTPRESLDPSGADAIRARIDQFAARLATTPRALKTADRRALMRELKDA 180 Query: 193 GCLDIR 198 GC+D+R Sbjct: 181 GCMDVR 186 >ref|ZP_08874833.1| putative DNA-binding protein [Verminephrobacter sp. At4] Length = 208 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 121/197 (61%), Positives = 154/197 (78%), Gaps = 8/197 (4%) Query: 18 DHALLLSQLQQVAQGLGETFAPFCEVVLHDLRDADHSIVALHNNLSGREVGDATTELGLA 77 +H LL Q+QQ+A+G+G TFAPFCE V+HDL D +H+I+++HNNLSGREVG TELGLA Sbjct: 7 EHRALLDQIQQIAEGIGATFAPFCEAVVHDLLDPEHAIISIHNNLSGREVGAPATELGLA 66 Query: 78 RIADESYPQVLTNYANTLPDGRQAKSTSIGIKDADGKYVAALCMNIDLTLFGALQGMLRQ 137 RI+D YPQ++ NYAN DGRQAKSTSIGIKDA GKY+AALCMN+DLTLF LQ +L Q Sbjct: 67 RISDPEYPQLIANYANHFADGRQAKSTSIGIKDAHGKYIAALCMNVDLTLFRGLQNVLGQ 126 Query: 138 FGGIDQGVRVAETLEPAGAEGLRSRIDAFAARLSTTPRSLKAEDRRQLMRELRQSGCLDI 197 F + +G + E+L+P GA+ +R RID FAARL+TTP +LK+EDRR L+REL++SGC++I Sbjct: 127 FSSV-EGAPLQESLDPTGADEIRERIDQFAARLATTPHALKSEDRRALIRELKESGCMEI 185 Query: 198 RARGRDRGRASGCLARH 214 R RA +ARH Sbjct: 186 R-------RAMAIVARH 195 >ref|YP_002498361.1| YheO domain-containing protein [Methylobacterium nodulans ORS 2060] gb|ACL58058.1| YheO domain protein [Methylobacterium nodulans ORS 2060] Length = 218 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 126/196 (64%), Positives = 152/196 (77%), Gaps = 6/196 (3%) Query: 8 SRKKKKPDRPDHA-----LLLSQLQQVAQGLGETFAPFCEVVLHDLRDADHSIVALHNNL 62 SRK+ P D LL QL+Q+AQGLGETFAPFCEVV+HDL D ++IVA+HNNL Sbjct: 2 SRKQPMPATSDKTAGDKELLFKQLKQIAQGLGETFAPFCEVVVHDLTDPKNAIVAIHNNL 61 Query: 63 SGREVGDATTELGLARIADESYPQVLTNYANTLPDGRQAKSTSIGIKDADGKYVAALCMN 122 SGR+VG TELGLARIAD YPQV+ NYANT DGR+AKSTSIGIKDADG YVAALC+N Sbjct: 62 SGRQVGQPATELGLARIADPDYPQVIANYANTFADGRRAKSTSIGIKDADGTYVAALCLN 121 Query: 123 IDLTLFGALQGMLRQFGGIDQGVRVAETLEPAGAEGLRSRIDAFAARLSTTPRSLKAEDR 182 IDLTLF +LQ + QF + + E+L PAGA+ +R+RID FAAR +TTPRSLKAE+R Sbjct: 122 IDLTLFQSLQSAIGQFTSLGTQGDL-ESLNPAGADAIRARIDQFAARRATTPRSLKAEER 180 Query: 183 RQLMRELRQSGCLDIR 198 R L+REL+++GCL +R Sbjct: 181 RTLLRELKEAGCLQVR 196 >ref|YP_004350200.1| hypothetical protein bgla_2g22540 [Burkholderia gladioli BSR3] gb|AEA64688.1| hypothetical protein bgla_2g22540 [Burkholderia gladioli BSR3] Length = 210 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 122/203 (60%), Positives = 149/203 (73%), Gaps = 8/203 (3%) Query: 12 KKPDRPDHALLLSQLQQVAQGLGETFAPFCEVVLHDLRDADHSIVALHNNLSGREVGDAT 71 +K + A L+ Q++ +AQGLGE FAPF EVV+HDLR +SI+A+HNNLSGR VGD T Sbjct: 3 RKSSPSEQASLIEQVRNIAQGLGEMFAPFTEVVVHDLRTPANSIIAIHNNLSGRAVGDPT 62 Query: 72 TELGLARIADESYPQVLTNYANTLPDGRQAKSTSIGIKDADGKYVAALCMNIDLTLFGAL 131 TELGLARIAD+ YP VL NYAN PDGR AKSTSIGIKDA+G+YVAALC+N+D+TLF + Sbjct: 63 TELGLARIADDDYPSVLANYANRFPDGRTAKSTSIGIKDANGQYVAALCLNVDVTLFRGI 122 Query: 132 QGMLRQFGGIDQGVRVAETLEPAGAEGLRSRIDAFAARLSTTPRSLKAEDRRQLMRELRQ 191 QG+L QF I V ETL+PA AE +R RID FA L+TTPRSLK E RR LM+EL+ Sbjct: 123 QGLLNQFCQIGPD-SVGETLDPANAEAIRERIDRFAMTLATTPRSLKTEQRRALMQELKD 181 Query: 192 SGCLDIRARGRDRGRASGCLARH 214 G L++R RA +A+H Sbjct: 182 DGYLEVR-------RAMEIIAQH 197