BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0225.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753345.1| ABC transporter substrate-binding protein [C... 414 e-113 ref|YP_002947448.1| extracellular solute-binding protein family ... 313 2e-83 gb|EGH71534.1| extracellular solute-binding protein family 3 [Ps... 250 2e-64 ref|YP_001237401.1| hypothetical protein BBta_1255 [Bradyrhizobi... 241 1e-61 ref|NP_774757.1| ABC transporter substrate-binding protein [Brad... 236 3e-60 >ref|YP_004753345.1| ABC transporter substrate-binding protein [Collimonas fungivorans Ter331] gb|AEK62522.1| ABC transporter substrate-binding protein [Collimonas fungivorans Ter331] Length = 339 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 196/278 (70%), Positives = 232/278 (83%) Query: 1 MSISRRHFLQSALAGTAVLTLPEVFAQDIESTMARVKRTGKLRLGAINGAIPYFNKDLVT 60 M I+RR+F+ A+A ++ VF+Q+ EST AR+KRTGKLR+GAINGA PYF KDL + Sbjct: 62 MHINRRNFIAQAIAVGSLAAAGPVFSQEPESTAARIKRTGKLRMGAINGASPYFTKDLAS 121 Query: 61 QEWKGFCADFGRDLARYLKAEVEWVETTWGNAVLDVQTNKIDAQLAMAPTPQRREVVDFS 120 EWKGF D GRDLA+YLK +VEWVETTWGNAVLDVQTNKID QL MAP+P RREVVDFS Sbjct: 122 GEWKGFMVDLGRDLAKYLKVDVEWVETTWGNAVLDVQTNKIDCQLGMAPSPARREVVDFS 181 Query: 121 NPLYNNINTVVARKGLEFKAWEDLNKPEIKVAVDVGSSHDQLVTRILPKATILRFETSAA 180 P++ N NTVVA+KG F+ WE LN P +KVAVDVGSSHDQLVTRILPKAT+LRFETSAA Sbjct: 182 APIFQNYNTVVAKKGFNFERWEQLNSPSVKVAVDVGSSHDQLVTRILPKATVLRFETSAA 241 Query: 181 ATMALQSGRADCQVLVVLLSTSLLVKLPNIGHIVFPTPDETAPTNIGIRKQADQSFVTAV 240 ATMALQSGR DCQVLV+LLST+LL KLPN+GHIVFP+PDET PTN+GIRKQ+DQ+F +V Sbjct: 242 ATMALQSGRVDCQVLVILLSTALLTKLPNVGHIVFPSPDETNPTNVGIRKQSDQTFTKSV 301 Query: 241 NGWLEESRKAGRIREIIVANMQNLAKVPPTAFPPQLKF 278 N WLEE+R +G+++ I++NMQ L VPPTAFP Q+ F Sbjct: 302 NAWLEEARASGKVKSTIISNMQTLVGVPPTAFPSQVHF 339 >ref|YP_002947448.1| extracellular solute-binding protein family 3 [Variovorax paradoxus S110] gb|ACS22182.1| extracellular solute-binding protein family 3 [Variovorax paradoxus S110] Length = 277 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 157/275 (57%), Positives = 202/275 (73%) Query: 4 SRRHFLQSALAGTAVLTLPEVFAQDIESTMARVKRTGKLRLGAINGAIPYFNKDLVTQEW 63 ++R L++ LA T+ TL AQ+ ES+M RV+RT LR+GAI GAIPYF+KDLV+ +W Sbjct: 3 TKRAILRTLLALTSACTLTLSVAQEPESSMTRVQRTKVLRVGAIAGAIPYFSKDLVSGKW 62 Query: 64 KGFCADFGRDLARYLKAEVEWVETTWGNAVLDVQTNKIDAQLAMAPTPQRREVVDFSNPL 123 +GF DF LA+ A+VE+VETTWGNAVLD+Q+NKIDA MAPTP R+EVV+FS+ L Sbjct: 63 EGFGPDFSESLAKKFGAKVEYVETTWGNAVLDLQSNKIDAMFGMAPTPARKEVVNFSDTL 122 Query: 124 YNNINTVVARKGLEFKAWEDLNKPEIKVAVDVGSSHDQLVTRILPKATILRFETSAAATM 183 ++N T V +KG K WE LN PE K+ VDVGSSHDQL TRILPKA + R E S +AT+ Sbjct: 123 FDNTYTAVCKKGFPTKTWEQLNAPENKIVVDVGSSHDQLATRILPKADVQRLENSGSATL 182 Query: 184 ALQSGRADCQVLVVLLSTSLLVKLPNIGHIVFPTPDETAPTNIGIRKQADQSFVTAVNGW 243 ALQ+GRADCQ+LV+LL+ LL K N+G + PTP TAP +IG+RK+AD + TAVN W Sbjct: 183 ALQAGRADCQILVILLAQPLLAKRANVGVMQIPTPIYTAPVSIGLRKEADPAMQTAVNAW 242 Query: 244 LEESRKAGRIREIIVANMQNLAKVPPTAFPPQLKF 278 L E R G +R +I+ NM+ LA VP +AFP ++KF Sbjct: 243 LGEVRAKGEVRSVILKNMEKLAGVPASAFPSEIKF 277 >gb|EGH71534.1| extracellular solute-binding protein family 3 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 282 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 122/271 (45%), Positives = 178/271 (65%), Gaps = 3/271 (1%) Query: 11 SALAGTAVLTLPEVFAQD---IESTMARVKRTGKLRLGAINGAIPYFNKDLVTQEWKGFC 67 S A A+++L ++Q ES+MARV RT LR+G +G++PY+ K+ T EW+GF Sbjct: 11 SFAAAIALMSLGPFYSQAQAAPESSMARVDRTKLLRVGVASGSVPYYKKNFSTGEWEGFG 70 Query: 68 ADFGRDLARYLKAEVEWVETTWGNAVLDVQTNKIDAQLAMAPTPQRREVVDFSNPLYNNI 127 DF RDLA+ L ++E+VETTWGN+VLD+Q+NKID A+ PTP R +++ FS PL++N Sbjct: 71 PDFARDLAKDLGVKIEFVETTWGNSVLDLQSNKIDVMFALTPTPAREKMIGFSAPLFDNT 130 Query: 128 NTVVARKGLEFKAWEDLNKPEIKVAVDVGSSHDQLVTRILPKATILRFETSAAATMALQS 187 ++ + G K+WE N PE K+ VD+GSS D T LP A+ R E+ A+TM LQ+ Sbjct: 131 YVMLCKSGYPDKSWEQFNSPEAKITVDLGSSMDNFATAKLPNASFSRLESVMASTMLLQA 190 Query: 188 GRADCQVLVVLLSTSLLVKLPNIGHIVFPTPDETAPTNIGIRKQADQSFVTAVNGWLEES 247 GRADCQVL VLL+ ++ K+P + I P P AP +IG++ D +F +A+N W+ + Sbjct: 191 GRADCQVLTVLLAMPIVQKMPGVVEIQVPQPALAAPVSIGVQFDEDPTFKSAINKWVAKE 250 Query: 248 RKAGRIREIIVANMQNLAKVPPTAFPPQLKF 278 R++G ++ II+ NMQ LA V P + P +KF Sbjct: 251 RRSGAVKRIILDNMQKLAGVAPESVPSSVKF 281 >ref|YP_001237401.1| hypothetical protein BBta_1255 [Bradyrhizobium sp. BTAi1] gb|ABQ33495.1| amino acid ABC transporter substrate-binding protein, PAAT family [Bradyrhizobium sp. BTAi1] Length = 273 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 115/257 (44%), Positives = 168/257 (65%), Gaps = 1/257 (0%) Query: 22 PEVFAQDIESTMARVKRTGKLRLGAINGAIPYFNKDLVTQEWKGFCADFGRDLARYLKAE 81 P + EST A+++RT KLR+ I G PY++KD+ T +W GFC +LA+ ++AE Sbjct: 18 PALAQSQPESTFAQIRRTKKLRIAGIVGTEPYYHKDIATGQWSGFCVSMATELAKAMEAE 77 Query: 82 VEWVETTWGNAVLDVQTNKIDAQLAMAPTPQRREVVDFSNPLYNNINTVVARKGLEFKAW 141 VE +E+TWGN+VLD+Q NKID ++PTP R +V+F+ P+ NN T++A+ G E K+W Sbjct: 78 VEIIESTWGNSVLDLQANKIDIMFGLSPTPSRALIVEFTRPIMNNTFTIIAKSGFEPKSW 137 Query: 142 EDLNKPEIKVAVDVGSSHDQLVTRILPKATILRFETSAAATMALQSGRADCQVLVVLLST 201 +DLNKPE+KVAVD+GS+HD R LPKAT++ ++ A +A+QSGRADC + V +LS Sbjct: 138 DDLNKPEVKVAVDIGSTHDLYARRTLPKATLVALKSPDEAVLAVQSGRADCLIQVAMLSL 197 Query: 202 SLLVKLPNIGHIVFPTPDETAPTNIGIRKQADQSFVTAVNGWLEESRKAGRIREIIVANM 261 + K +G ++ PTP PT G+R +D F T V+ WLE SR G +RE I+ ++ Sbjct: 198 VTVKKNAKVGKVIIPTPVAAQPTCCGVRVDSDTRFRTYVDNWLEYSRALGALREWILGSL 257 Query: 262 QNLAKVPPTAFPPQLKF 278 +L + PP L+F Sbjct: 258 -SLVNIQEQDIPPGLQF 273 >ref|NP_774757.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53382.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 284 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 114/245 (46%), Positives = 166/245 (67%), Gaps = 1/245 (0%) Query: 30 ESTMARVKRTGKLRLGAINGAIPYFNKDLVTQEWKGFCADFGRDLARYLKAEVEWVETTW 89 EST AR++RT K+R+GA+ G PY+ KDL + +WKGF D + LA ++AE+E ETTW Sbjct: 37 ESTFARIRRTKKMRIGAVGGGAPYYMKDLASGQWKGFYVDIAKALADDMEAELEITETTW 96 Query: 90 GNAVLDVQTNKIDAQLAMAPTPQRREVVDFSNPLYNNINTVVARKGLEFKAWEDLNKPEI 149 GN+VLD+Q+NKID + PTP+R VVDFS P++NN ++ +K + K W +LN P++ Sbjct: 97 GNSVLDLQSNKIDIFFGLNPTPKRALVVDFSVPVFNNAFGILCKKDFKPKTWAELNSPDV 156 Query: 150 KVAVDVGSSHDQLVTRILPKATILRFETSAAATMALQSGRADCQVLVVLLSTSLLVKLPN 209 K+AVD GSSHDQ+V+R++PKA I R +T+ AT ALQ+GR D Q L+ +LS ++L K P+ Sbjct: 157 KIAVDQGSSHDQVVSRLIPKAQISRLKTADDATAALQTGRVDAQCLITMLSLTVLKKNPS 216 Query: 210 IGHIVFPTPDETAPTNIGIRKQADQSFVTAVNGWLEESRKAGRIREIIVANMQNLAKVPP 269 +G V PTP +N G R++ D+++ VN W++ ++ G IR I+ NM+ L V Sbjct: 217 LGQFVLPTPIFATTSNAGFRRETDKTWRDYVNTWIDFNKGLGFIRNAIITNME-LVGVTE 275 Query: 270 TAFPP 274 PP Sbjct: 276 ADIPP 280