BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0213.p         (166 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775984.1| signal peptide protein [Herbaspirillum serop...   154   4e-36
ref|ZP_02062624.1| spore coat protein [Rickettsiella grylli] >gi...   108   2e-22
ref|NP_107982.1| spore coat protein U precursor [Mesorhizobium l...    99   2e-19
ref|YP_745148.1| protein U [Granulibacter bethesdensis CGDNIH1] ...    95   3e-18
ref|ZP_02907836.1| Spore coat U domain protein [Burkholderia amb...    95   4e-18

>ref|YP_003775984.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64076.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 141/166 (84%), Positives = 155/166 (93%)

Query: 1   MFHAKKNRFVAATVAAVVLASSAPASFAATASGTLTISASVVASCTVVGSAIAFGAYTQS 60
           MF  KKNRF+AA VAA  L  +APASFAATAS +LTISASVVASCTVVGS+IAFGAYTQ+
Sbjct: 1   MFVTKKNRFIAACVAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAYTQA 60

Query: 61  LVNQSGTITVLCTNGTAYNVGLDAGTGTGSTVSSRKMSAAGGGTLNYALYRDSARSNNWG 120
           +VNQ+G+ITV CTNGTAYNVGLDAGTGTG+TVS+RKMSA+GGGTLNYALYRDSARS+NWG
Sbjct: 61  VVNQTGSITVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWG 120

Query: 121 STIGTDTVTGTGSGLTQTLTVYGQIAAAQTPLAGAYSDTVTVTLTY 166
           STIGTDT+TGTGSGL QTLTVYGQI AAQTPLAG+YSDTVTVTLTY
Sbjct: 121 STIGTDTLTGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166


>ref|ZP_02062624.1| spore coat protein [Rickettsiella grylli]
 gb|EDP46629.1| spore coat protein [Rickettsiella grylli]
          Length = 161

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 79/151 (52%), Positives = 107/151 (70%), Gaps = 2/151 (1%)

Query: 17  VVLASSAPASFAATASGTLTISASVVASCTVVG-SAIAFGAYTQSLVNQSGTITVLCTNG 75
           +VL  S PA FA T +G L I+A+V A+C     +++ FG YT ++ N +G + V CTNG
Sbjct: 12  LVLLLSHPA-FAPTTTGNLPINATVNAACIFGNITSVNFGNYTGAINNATGGVEVNCTNG 70

Query: 76  TAYNVGLDAGTGTGSTVSSRKMSAAGGGTLNYALYRDSARSNNWGSTIGTDTVTGTGSGL 135
           T YN+ L  GT  G+TV++R+M+    G+L YAL+R+S R+ NWG TIGTDTV GTG+G+
Sbjct: 71  TTYNISLGPGTFPGATVTTRQMTGTPTGSLAYALFRNSGRTQNWGQTIGTDTVAGTGTGV 130

Query: 136 TQTLTVYGQIAAAQTPLAGAYSDTVTVTLTY 166
            Q  TVYGQIAA  TP AG+Y+DTV +T+TY
Sbjct: 131 IQPYTVYGQIAAGLTPAAGSYNDTVVITITY 161


>ref|NP_107982.1| spore coat protein U precursor [Mesorhizobium loti MAFF303099]
 dbj|BAB54127.1| mll7726 [Mesorhizobium loti MAFF303099]
          Length = 165

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/142 (50%), Positives = 95/142 (66%), Gaps = 3/142 (2%)

Query: 28  AATASGTLTISASVVASCTV-VGSAIAFG--AYTQSLVNQSGTITVLCTNGTAYNVGLDA 84
            ATA+G +T+  ++ A C V   + + FG      + V+Q+ TI+V CTN T YNVGL A
Sbjct: 24  GATATGNMTVRITIQAECKVQTATDMDFGTNGVIDANVDQTSTISVQCTNSTPYNVGLSA 83

Query: 85  GTGTGSTVSSRKMSAAGGGTLNYALYRDSARSNNWGSTIGTDTVTGTGSGLTQTLTVYGQ 144
           G G G+TV+ RKM+      LNY+LYRD AR+  WG+TIGTDTV GTG+G  Q LTVYG+
Sbjct: 84  GVGAGATVAVRKMTGPAAAVLNYSLYRDVARAQLWGTTIGTDTVAGTGNGAAQPLTVYGR 143

Query: 145 IAAAQTPLAGAYSDTVTVTLTY 166
           +    TP AG Y+DTV +T+TY
Sbjct: 144 VPPQTTPGAGVYTDTVAITVTY 165


>ref|YP_745148.1| protein U [Granulibacter bethesdensis CGDNIH1]
 gb|ABI62225.1| protein U precursor [Granulibacter bethesdensis CGDNIH1]
          Length = 172

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MFHAKKNRFVAATVAAVVLASSAP--ASFAATASGTLTISASVVASCTVVGSAIAFGAYT 58
           +F + KN  +AA +    + S  P  +  AAT + T  ++A+V ASC +  + ++FG Y+
Sbjct: 5   IFSSNKNSRIAAIILVGAVNSLIPLKSISAATTTTTFQVTATVQASCIIQATNLSFGNYS 64

Query: 59  QSLVNQSGTITVLCTNGTAYNVGLDAGTGTGSTVSSRKMSAAGGGTLNYALYRDSARSNN 118
            S  + + TI V CTN T YNVGL AGTG+G+TVS+RKMS      L YALY D++RS N
Sbjct: 65  GSQTDATSTIQVTCTNSTPYNVGLSAGTGSGATVSNRKMSLNSTSALPYALYSDASRSTN 124

Query: 119 WGSTIGTDTVTGTGSGLTQTLTVYGQIAAAQTPLAGAYSDTVTVTLTY 166
           WG+T   DTV+GTG+G  Q+LTVYG+I     P  G+Y+DT+T T+ +
Sbjct: 125 WGNTPNQDTVSGTGNGSAQSLTVYGRIQTGNYPTPGSYADTITATVNF 172


>ref|ZP_02907836.1| Spore coat U domain protein [Burkholderia ambifaria MEX-5]
 gb|EDT41025.1| Spore coat U domain protein [Burkholderia ambifaria MEX-5]
          Length = 193

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 81/163 (49%), Positives = 112/163 (68%), Gaps = 2/163 (1%)

Query: 4   AKKNRFVAATVAAVVLASSAPASFAATASGTLTISASVVASCTVVGSAIAFGAYTQSLVN 63
            +  RF A  V    LA + PA  AATA+ T+ ++A+V A+C +  + +AFGAY  +  +
Sbjct: 33  GRPKRFAAGVVLLGTLAFNLPAV-AATATATMAVTATVDATCQITATPLAFGAYAGTQTD 91

Query: 64  QSGTITVLCTNGTAYNVGLDAGTGTGSTVSSRKMSAAGGGTLNYALYRDSARSNNWGSTI 123
            + T++V C+N T YNVGLDAG  TG+TV+SR MS      L YAL++D+ R+ NWG+T+
Sbjct: 92  ATATLSVTCSNTTPYNVGLDAGLATGATVTSRAMSITDASLL-YALFQDAGRTTNWGNTV 150

Query: 124 GTDTVTGTGSGLTQTLTVYGQIAAAQTPLAGAYSDTVTVTLTY 166
           GTDTV GTG+G  QTLTVYG++AA Q    GAY+DT+T T+TY
Sbjct: 151 GTDTVAGTGTGSAQTLTVYGRVAAGQFVTPGAYTDTITATVTY 193