BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0207.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774998.1| LysR family transcription regulator protein ... 568 e-160 ref|YP_004155446.1| LysR family transcriptional regulator [Vario... 289 4e-76 ref|YP_002944787.1| LysR family transcriptional regulator [Vario... 288 9e-76 gb|ADR62016.1| LysR family transcriptional regulator [Pseudomona... 287 1e-75 ref|YP_004702247.1| LysR family transcriptional regulator [Pseud... 280 3e-73 >ref|YP_003774998.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63090.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 568 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 293/300 (97%), Positives = 298/300 (99%) Query: 1 MADLTLPLNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRTRQV 60 MADLTLPLNAIRAFLAAARHQSFTLAA ELNVTHGAISRQIKNLE YLGMPLFERRTRQV Sbjct: 1 MADLTLPLNAIRAFLAAARHQSFTLAAHELNVTHGAISRQIKNLEGYLGMPLFERRTRQV 60 Query: 61 LLTERGRQFFEEASPALDILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERY 120 LLTERGRQFFEEASPAL+ILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERY Sbjct: 61 LLTERGRQFFEEASPALEILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERY 120 Query: 121 PGIAPQVVTSTATVGKAGSSFDIAIRRGETNWPETLKVQRFMEDELVLVASPALLQSMPL 180 PGIAPQVVTSTATVGKAGSSFDIA+RRGETNWPETLKVQRFMEDELVLVASPALLQ+MPL Sbjct: 121 PGIAPQVVTSTATVGKAGSSFDIAVRRGETNWPETLKVQRFMEDELVLVASPALLQAMPL 180 Query: 181 EDVSGLARHTVLVSRSRRNDWEDWRKLAGLKRSRSQAMLHFDHVHFVLQAVMDGLGVALS 240 EDVSGLARHTVL+SRSRRNDWEDWRKLAGLKRSRSQAMLHFDHVHFVLQAV+DGLGVALS Sbjct: 181 EDVSGLARHTVLLSRSRRNDWEDWRKLAGLKRSRSQAMLHFDHVHFVLQAVVDGLGVALS 240 Query: 241 PVSLADNDLRSGRLVCPFPDLRLTLAPYYLGINAQAGSEAQLFARWLAEYRGASLMFAGG 300 PVSLADNDLRSGRLVCPFPDLRLTLAPYYLGINAQAGSEAQLFARWLAEYRGASLMFAGG Sbjct: 241 PVSLADNDLRSGRLVCPFPDLRLTLAPYYLGINAQAGSEAQLFARWLAEYRGASLMFAGG 300 >ref|YP_004155446.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU37335.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 300 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 157/283 (55%), Positives = 201/283 (71%) Query: 7 PLNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRTRQVLLTERG 66 PLNA+RAF+AAARHQSFT AA+EL+VTH A+SRQIK+LE+ LG+ LFERR RQV LT G Sbjct: 7 PLNAVRAFVAAARHQSFTRAAEELHVTHSAVSRQIKSLEECLGVALFERRIRQVALTTEG 66 Query: 67 RQFFEEASPALDILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERYPGIAPQ 126 +QFF EA PAL + AA+ + P R V INVRPSFAVRWLIP L FVER+P I PQ Sbjct: 67 QQFFAEAGPALAQINAAAQVLQAQGPARAVRINVRPSFAVRWLIPRLPLFVERHPDIEPQ 126 Query: 127 VVTSTATVGKAGSSFDIAIRRGETNWPETLKVQRFMEDELVLVASPALLQSMPLEDVSGL 186 VVTST +A +FDIA+RRG WP + +V F+EDE+++V +PAL ++ PL D+ L Sbjct: 127 VVTSTVMPEQATGTFDIAVRRGHEGWPSSARVHPFLEDEVLVVGAPALFKAHPLADLRAL 186 Query: 187 ARHTVLVSRSRRNDWEDWRKLAGLKRSRSQAMLHFDHVHFVLQAVMDGLGVALSPVSLAD 246 A H L +++R++DW+ W+K G R++ L FDH+HFVLQA +DGLG+AL+P SL Sbjct: 187 ASHVQLSAKTRKDDWDAWKKQVGAPRTKPAGRLQFDHLHFVLQAAVDGLGIALAPTSLVS 246 Query: 247 NDLRSGRLVCPFPDLRLTLAPYYLGINAQAGSEAQLFARWLAE 289 +DL SGRL P P LR+ L YY G+ + A EA+ A W E Sbjct: 247 HDLASGRLQSPLPALRMALDRYYYGLASDAAPEARHVAAWFEE 289 >ref|YP_002944787.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS19521.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 304 Score = 288 bits (736), Expect = 9e-76, Method: Composition-based stats. Identities = 159/283 (56%), Positives = 201/283 (71%) Query: 7 PLNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRTRQVLLTERG 66 PLNA+RAF+AAARHQSFT AA EL+VTH A+SRQIK+LE+ LG+ LFERR RQV LT G Sbjct: 7 PLNAVRAFVAAARHQSFTRAAIELHVTHSAVSRQIKSLEECLGVALFERRIRQVALTAEG 66 Query: 67 RQFFEEASPALDILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERYPGIAPQ 126 +QFF EA PA+ + AAR + P R V INVRPSFAVRWLIP L FVER+P I PQ Sbjct: 67 QQFFAEAGPAIAQIHAAARALQAQGPARAVRINVRPSFAVRWLIPRLPLFVERHPEIEPQ 126 Query: 127 VVTSTATVGKAGSSFDIAIRRGETNWPETLKVQRFMEDELVLVASPALLQSMPLEDVSGL 186 VVTST +A SFDIA+RRG WP +++V+ F+EDE+++V +PAL ++ PL D+ L Sbjct: 127 VVTSTVMPEQAAGSFDIAVRRGLEGWPPSIEVRPFLEDEVLVVGAPALFKAHPLADLRAL 186 Query: 187 ARHTVLVSRSRRNDWEDWRKLAGLKRSRSQAMLHFDHVHFVLQAVMDGLGVALSPVSLAD 246 A H L +R+R+ DW+ W+K G R++ L FDH+HFVLQA +DGLG+AL+P SL Sbjct: 187 ASHVQLSARTRKEDWDAWKKHVGAPRAKPAGRLQFDHLHFVLQAAVDGLGIALAPTSLVA 246 Query: 247 NDLRSGRLVCPFPDLRLTLAPYYLGINAQAGSEAQLFARWLAE 289 +DL SGRL P P LR+ L YY G++ A EA A+W E Sbjct: 247 HDLASGRLQSPLPALRMPLNRYYYGLSPDAAPEAAYVAQWFEE 289 >gb|ADR62016.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 300 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 149/287 (51%), Positives = 201/287 (70%), Gaps = 1/287 (0%) Query: 1 MADLTLPLNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRTRQV 60 +ADL PLNA+RAF +AARHQSF+ AA+EL+VTH A+SR I+ LE++LG+ LFERR RQ Sbjct: 2 IADLP-PLNAVRAFASAARHQSFSRAAEELHVTHSAVSRHIRLLEEHLGVVLFERRNRQS 60 Query: 61 LLTERGRQFFEEASPALDILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERY 120 LLT G+ +FE+ S L +ANA + R + +R VVINVRPSFAVRWLIP L DF+ ++ Sbjct: 61 LLTPIGQAYFEQISQGLAQIANATHALTRGSASRKVVINVRPSFAVRWLIPRLPDFMAQH 120 Query: 121 PGIAPQVVTSTATVGKAGSSFDIAIRRGETNWPETLKVQRFMEDELVLVASPALLQSMPL 180 P I P+VVTST ++ +FD+ +RRG + W ++ +ED+++LVA+PALLQ++P+ Sbjct: 121 PDIQPEVVTSTLAPDQSREAFDVVVRRGSSGWAANVEPHVLLEDDMLLVAAPALLQAIPV 180 Query: 181 EDVSGLARHTVLVSRSRRNDWEDWRKLAGLKRSRSQAMLHFDHVHFVLQAVMDGLGVALS 240 S + RHT+L R+R DW W KLAG+ + + Q L FDH+H VLQA +DGLGVAL Sbjct: 181 IAPSDVLRHTLLSGRTRSGDWAAWCKLAGISQPQRQPRLQFDHMHLVLQAAVDGLGVALC 240 Query: 241 PVSLADNDLRSGRLVCPFPDLRLTLAPYYLGINAQAGSEAQLFARWL 287 P SL DL +GRL P P LRL L YY G++ A +E Q+F W+ Sbjct: 241 PASLLGKDLATGRLYSPLPHLRLPLTRYYYGVSQDAVAETQVFIDWM 287 >ref|YP_004702247.1| LysR family transcriptional regulator [Pseudomonas putida S16] gb|AEJ13367.1| LysR family transcriptional regulator [Pseudomonas putida S16] Length = 299 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 139/281 (49%), Positives = 197/281 (70%) Query: 7 PLNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRTRQVLLTERG 66 PLNA+RAF +AARHQSF+ AA+EL+VTH A+SR I+ LE++LG+ LFERR RQ +LT G Sbjct: 7 PLNALRAFASAARHQSFSRAAEELHVTHSAVSRHIRLLEEHLGIMLFERRNRQSVLTPSG 66 Query: 67 RQFFEEASPALDILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERYPGIAPQ 126 + ++E+ S L +ANA + + R + +R V+INVRPSFAVRWLIP L +F+ ++P I P+ Sbjct: 67 QAYYEQISLGLAQIANATQALARSSASRKVIINVRPSFAVRWLIPRLPEFMTQFPEIQPE 126 Query: 127 VVTSTATVGKAGSSFDIAIRRGETNWPETLKVQRFMEDELVLVASPALLQSMPLEDVSGL 186 +VTS + +FD+ +RRG W L+ EDEL+LVA+P+LL+++P++ S + Sbjct: 127 IVTSILAPDPSREAFDLVVRRGSAGWAANLEPNMLFEDELLLVAAPSLLEAIPVQAPSDV 186 Query: 187 ARHTVLVSRSRRNDWEDWRKLAGLKRSRSQAMLHFDHVHFVLQAVMDGLGVALSPVSLAD 246 RHT+L R+R DW+ W KLAG+ ++R + L FDH+H VLQA +DGLG+AL P +L Sbjct: 187 LRHTLLSGRTRNGDWQAWCKLAGVSQARQRPALQFDHMHLVLQAAVDGLGLALCPATLLG 246 Query: 247 NDLRSGRLVCPFPDLRLTLAPYYLGINAQAGSEAQLFARWL 287 DL +GRL P P LRL L YY G++ A +E Q+F W+ Sbjct: 247 KDLATGRLHNPLPHLRLPLTRYYYGVSKDAVAETQVFIDWM 287