BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0198.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773726.1| TonB domain-containing protein [Herbaspirill... 253 2e-65 ref|YP_004754728.1| ferric siderophore transport system, peripla... 169 2e-40 ref|ZP_08274075.1| Ferric siderophore transport system, periplas... 134 1e-29 gb|EGH65989.1| tonB domain-containing protein [Pseudomonas syrin... 80 3e-13 gb|EGH62498.1| tonB domain-containing protein [Pseudomonas syrin... 80 4e-13 >ref|YP_003773726.1| TonB domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ61818.1| TonB domain protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 196/239 (82%), Positives = 211/239 (88%), Gaps = 3/239 (1%) Query: 1 MMNVPILFRFREPLATLPSLVVLAVLILAGVQKVTELKRKEDPQPVQISLTEIPPPPVPQ 60 MMN+P+LFRFREPLATLPSLVVLAVLI+AGVQK TELKRKEDPQPVQI+L E+PPPP PQ Sbjct: 1 MMNLPLLFRFREPLATLPSLVVLAVLIIAGVQKATELKRKEDPQPVQIALMELPPPPPPQ 60 Query: 61 PKPQVEPQPKPVEPPKKQEAPKPVAKPAPVKQAPAPVDPTTPSTEAPILPAAKPQASAPA 120 PKPQVEP PKPVEPPKKQEAP+PVAKPAPVKQ PAPVDP PS AP++PA +AP Sbjct: 61 PKPQVEPPPKPVEPPKKQEAPRPVAKPAPVKQTPAPVDPAPPSANAPVVPAPPSTPAAPP 120 Query: 121 TPPVQAAPTTPPAPPPSNTAHVEQTYVGQLRAHLNSIKRYPTGREASTLRPQGKVRVWFV 180 AP PP NTA++EQTYVGQLRAHLNSIKRYPTGREASTLRPQGKVRVWFV Sbjct: 121 VQAAPVAPPAPPP---VNTANIEQTYVGQLRAHLNSIKRYPTGREASTLRPQGKVRVWFV 177 Query: 181 LKRDGSVVDSGIESSSNSMLLDDAARKTINRAAFAPFPEDSYKGESTHRFTADLEFIPV 239 L+RDGSVVDSGIESSSNSMLLDDAARKTINRAAFAPFP+D+YKGESTHRFTADL+FIPV Sbjct: 178 LRRDGSVVDSGIESSSNSMLLDDAARKTINRAAFAPFPDDTYKGESTHRFTADLDFIPV 236 >ref|YP_004754728.1| ferric siderophore transport system, periplasmic binding protein TonB [Collimonas fungivorans Ter331] gb|AEK63905.1| Ferric siderophore transport system, periplasmic binding protein TonB [Collimonas fungivorans Ter331] Length = 243 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 125/238 (52%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 1 MMNVPILFRFREPLATLPSLVVLAVLILAGVQKVTELKRKEDPQPVQISLTEIPPPPVPQ 60 MM +P LFRFR+ LATLP++++LA+L+ AG+QKV +++ D VQI+LTE P PP P Sbjct: 5 MMTMPFLFRFRDALATLPAILMLAILVFAGIQKVVKIEPHPDDSLVQIALTE-PEPPAPP 63 Query: 61 PKPQVEPQPKPVEPPKKQEAPKPVAKPAPVKQAPAPVDPTTPSTEAPILPAAKPQASAPA 120 P P + K +PV +P P + T PS E P A A Sbjct: 64 VITPPPQVPTPPQVVKPVPVAQPVRQPTPPQAVSQAPVSTIPSAEIA-APPKAVAAPAAP 122 Query: 121 TPPVQAAPTTPPAPPPSNTAHVEQTYVGQLRAHLNSIKRYPTGREASTLRPQGKVRVWFV 180 P AP P N A +E YV ++RAHLNSIKRYPTGREAS RPQGKV+VWFV Sbjct: 123 APATPPAPEPAPPVAKPNNASIEAGYVSKVRAHLNSIKRYPTGREASQQRPQGKVKVWFV 182 Query: 181 LKRDGSVVDSGIESSSNSMLLDDAARKTINRAAFAPFPEDSYKGESTHRFTADLEFIP 238 L RDGS+V+ GIE SSNSMLLD+AARKTINRAAF FPE S+ GE+THRF+A+LEF+P Sbjct: 183 LNRDGSLVEQGIEESSNSMLLDEAARKTINRAAFPAFPESSWAGETTHRFSAELEFVP 240 >ref|ZP_08274075.1| Ferric siderophore transport system, periplasmic binding protein TonB [Oxalobacteraceae bacterium IMCC9480] gb|EGF32454.1| Ferric siderophore transport system, periplasmic binding protein TonB [Oxalobacteraceae bacterium IMCC9480] Length = 235 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 109/239 (45%), Positives = 136/239 (56%), Gaps = 10/239 (4%) Query: 4 VPILFRFREPLATLPSLVVLAVLILAGVQKVTELKRKEDPQPVQISLTEIPPPPVPQPKP 63 +P FRFR+ +A+LPSL +L +LIL G+ K + R D VQI+L +P Sbjct: 1 MPFFFRFRDTVASLPSLGILLLLILVGMSKTPTIARPHDDSLVQIALI------TAEPVV 54 Query: 64 QVEPQPKPVEPPKKQEAPKPVAKPAPVKQAPAPVDPTTPSTEAPILPAAKP----QASAP 119 +P P P V P + PV + ++E P LP A Sbjct: 55 VPKPVPVVPTPAPTSTPRPVVIPPVAPPRPSMPVAASAVASELPALPMPSKTIAPVVPAE 114 Query: 120 ATPPVQAAPTTPPAPPPSNTAHVEQTYVGQLRAHLNSIKRYPTGREASTLRPQGKVRVWF 179 V + + Y+ +RAHLN IKRYPTGREAS LRPQGKVR+WF Sbjct: 115 PVAVVPPVAVPAAVAVKARAVSPDAEYIAAVRAHLNRIKRYPTGREASQLRPQGKVRIWF 174 Query: 180 VLKRDGSVVDSGIESSSNSMLLDDAARKTINRAAFAPFPEDSYKGESTHRFTADLEFIP 238 VL+RDGSVVD G+E SSNSMLLDDAARKTINRA FA FPE S+ GES+HRF+A+LEF+P Sbjct: 175 VLQRDGSVVDVGLEQSSNSMLLDDAARKTINRATFAAFPEASWAGESSHRFSAELEFVP 233 >gb|EGH65989.1| tonB domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 249 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 119/245 (48%), Gaps = 17/245 (6%) Query: 7 LFRFREPLATLPSLVVLAVLILAGVQKVTELKRKEDPQPVQISLTEIPPPPVPQPKPQVE 66 LFR R+ L LP+LV L +++ + +++ D V+++L E P P PQP Q E Sbjct: 4 LFRVRQWLGGLPALVALIAIVIGVQTRPLKMEPVYDESAVELALVE-PESPAPQPLAQPE 62 Query: 67 PQPKPVEPPKKQEAPKPVAKPAPVKQAPAPVDPTTPSTEAPILPAAKPQASAPATPPVQA 126 P P E P + P P P P A A PVQA Sbjct: 63 PPPVQPEEPPPAPPVIESEEAEPAPPPPPKPVPKPAPKPEPRPKPLPKPAVAKPVEPVQA 122 Query: 127 APTTP--------------PAPPPSNTAHVEQTYVGQLRAHLNSIKRYPTGREASTLRPQ 172 P+ P PAPP +T +E Y+ LR L+ K+YPTGR+AS RP Sbjct: 123 -PSKPIASAPVSPPSPPAPPAPPKVDTQGIEGGYLKGLRNDLDGYKQYPTGRQASLERPS 181 Query: 173 GKVRVWFVLKRDGSVVDSGIESSSNSMLLDDAARKTINR-AAFAPFPEDSYKGESTHRFT 231 G+V VW ++ R G V+DSGI++ ++SMLL+ AA ++ R PFPE ++ G + RFT Sbjct: 182 GEVVVWLLVDRQGRVLDSGIQTQASSMLLNRAATNSLRRIKQVKPFPEQAFGGRNEQRFT 241 Query: 232 ADLEF 236 A + Sbjct: 242 ATFNY 246 >gb|EGH62498.1| tonB domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 251 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 1/100 (1%) Query: 138 NTAHVEQTYVGQLRAHLNSIKRYPTGREASTLRPQGKVRVWFVLKRDGSVVDSGIESSSN 197 +T +E Y+ LR L+ K+YPTGR+AS RP G+V VW ++ R G V+DSGI++ ++ Sbjct: 149 DTQGIEGGYLKGLRNELDGYKQYPTGRQASLERPSGEVVVWLLVDRQGRVLDSGIQTQAS 208 Query: 198 SMLLDDAARKTINR-AAFAPFPEDSYKGESTHRFTADLEF 236 SMLL+ AA ++ R PFPE ++ G + RFTA + Sbjct: 209 SMLLNRAATNSLRRIKQVKPFPEQAFGGRNEQRFTATFNY 248