BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0197.p (135 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773727.1| biopolymer transport ExbD/TolR protein [Herb... 227 4e-58 ref|YP_004754727.1| biopolymer transport protein ExbD/TolR [Coll... 194 4e-48 ref|ZP_08274074.1| Biopolymer transport protein ExbD/TolR [Oxalo... 183 6e-45 ref|ZP_04591360.1| biopolymer transport protein ExbD [Pseudomona... 168 3e-40 ref|YP_233970.1| biopolymer transport protein ExbD/TolR [Pseudom... 168 3e-40 >ref|YP_003773727.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] gb|ADJ61819.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] Length = 135 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 130/134 (97%), Positives = 133/134 (99%) Query: 1 MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSSSTAQDLKPQT 60 MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSSSTAQDLKPQT Sbjct: 1 MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSSSTAQDLKPQT 60 Query: 61 KAVITIAKEDVIQVDGENTTLDALTARLDKLRKDGEKLNLIINSDRGVEVQRLVDVMDTL 120 KAVITIAK++VIQVDGENTTLDALTARLDKLR +GEKLNLIINSDRGVEVQRLVDVMDTL Sbjct: 61 KAVITIAKDEVIQVDGENTTLDALTARLDKLRHEGEKLNLIINSDRGVEVQRLVDVMDTL 120 Query: 121 KKGGFDSISIATRK 134 KKGGFDSISIATRK Sbjct: 121 KKGGFDSISIATRK 134 >ref|YP_004754727.1| biopolymer transport protein ExbD/TolR [Collimonas fungivorans Ter331] gb|AEK63904.1| Biopolymer transport protein ExbD/TolR [Collimonas fungivorans Ter331] Length = 135 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 106/134 (79%), Positives = 120/134 (89%) Query: 1 MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSSSTAQDLKPQT 60 MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKT LP++S++QDLKPQ Sbjct: 1 MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKTHLPTASSSQDLKPQN 60 Query: 61 KAVITIAKEDVIQVDGENTTLDALTARLDKLRKDGEKLNLIINSDRGVEVQRLVDVMDTL 120 KAVITI D +QVDG +T + L ARL+ RK+GEKLN+I+NSDRGVEVQRLV+VMDTL Sbjct: 61 KAVITIGLNDALQVDGVDTKISELPARLNLARKNGEKLNVIVNSDRGVEVQRLVEVMDTL 120 Query: 121 KKGGFDSISIATRK 134 K+ GF+SISIATRK Sbjct: 121 KQNGFESISIATRK 134 >ref|ZP_08274074.1| Biopolymer transport protein ExbD/TolR [Oxalobacteraceae bacterium IMCC9480] gb|EGF32453.1| Biopolymer transport protein ExbD/TolR [Oxalobacteraceae bacterium IMCC9480] Length = 135 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 102/134 (76%), Positives = 120/134 (89%) Query: 1 MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSSSTAQDLKPQT 60 MRSWDE KKRKARVEIIPMIDVMMFL+VFFVLISLNVIPALGLKT+LPS+S++QDL PQ Sbjct: 1 MRSWDESKKRKARVEIIPMIDVMMFLMVFFVLISLNVIPALGLKTRLPSASSSQDLAPQK 60 Query: 61 KAVITIAKEDVIQVDGENTTLDALTARLDKLRKDGEKLNLIINSDRGVEVQRLVDVMDTL 120 KAVITI +D +QVDG +T + AL ARL++ + G+KLN+I+NSDRGVEVQRLV+VMDTL Sbjct: 61 KAVITIGLQDALQVDGIDTPITALAARLNQQKIAGDKLNVIVNSDRGVEVQRLVEVMDTL 120 Query: 121 KKGGFDSISIATRK 134 K+ GF+SISIATRK Sbjct: 121 KQNGFESISIATRK 134 >ref|ZP_04591360.1| biopolymer transport protein ExbD [Pseudomonas syringae pv. oryzae str. 1_6] ref|ZP_04592049.1| biopolymer transport protein ExbD [Pseudomonas syringae pv. oryzae str. 1_6] gb|EGI05811.1| biopolymer transport protein ExbD [Pseudomonas syringae pv. oryzae str. 1_6] gb|EGI06507.1| biopolymer transport protein ExbD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 135 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 89/134 (66%), Positives = 111/134 (82%) Query: 1 MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSSSTAQDLKPQT 60 MR+WDEPKKRKA +E+IPMIDVMMFLLVFFVL+SLNVIPALG+KTQLPS+S++Q LKPQ Sbjct: 1 MRTWDEPKKRKAHIELIPMIDVMMFLLVFFVLVSLNVIPALGMKTQLPSASSSQQLKPQN 60 Query: 61 KAVITIAKEDVIQVDGENTTLDALTARLDKLRKDGEKLNLIINSDRGVEVQRLVDVMDTL 120 K+++T+ +Q+DG+ TT+DAL L L K K +I+NSD+GVEV RLV+VMDTL Sbjct: 61 KSILTLGLNGELQLDGKATTVDALVPALKALEKPDTKTTIIVNSDKGVEVARLVEVMDTL 120 Query: 121 KKGGFDSISIATRK 134 + GGF S+SIATRK Sbjct: 121 RLGGFTSVSIATRK 134 >ref|YP_233970.1| biopolymer transport protein ExbD/TolR [Pseudomonas syringae pv. syringae B728a] ref|ZP_06499397.1| biopolymer transport protein ExbD [Pseudomonas syringae pv. syringae FF5] gb|AAY35932.1| outer membrane transport energization protein ExbD [Pseudomonas syringae pv. syringae B728a] gb|EGH31253.1| biopolymer transport protein ExbD [Pseudomonas syringae pv. japonica str. M301072PT] gb|EGH44829.1| biopolymer transport protein ExbD [Pseudomonas syringae pv. pisi str. 1704B] gb|EGH72797.1| biopolymer transport protein ExbD [Pseudomonas syringae pv. aceris str. M302273PT] gb|EGH75565.1| biopolymer transport protein ExbD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 135 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 88/134 (65%), Positives = 111/134 (82%) Query: 1 MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSSSTAQDLKPQT 60 MR+WDEPKKRKA +E+IPMIDVMMFLLVFFVL+SLNVIPALG+KTQLPS+S++Q LKPQ Sbjct: 1 MRTWDEPKKRKAHIELIPMIDVMMFLLVFFVLVSLNVIPALGMKTQLPSASSSQQLKPQN 60 Query: 61 KAVITIAKEDVIQVDGENTTLDALTARLDKLRKDGEKLNLIINSDRGVEVQRLVDVMDTL 120 K+++T+ +Q+DG+ TT+DAL L L K K +I+NSD+GVEV RLV++MDTL Sbjct: 61 KSILTLGLNGELQLDGKATTVDALVPALKALEKPDSKTTIIVNSDKGVEVARLVEIMDTL 120 Query: 121 KKGGFDSISIATRK 134 + GGF S+SIATRK Sbjct: 121 RLGGFTSVSIATRK 134