BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0194.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773731.1| LysR family transcription regulator protein ... 559 e-157 ref|ZP_01893949.1| transcriptional regulator, LysR family protei... 315 4e-84 ref|ZP_01043422.1| transcriptional regulator, LysR family protei... 309 3e-82 ref|YP_004039843.1| LysR family transcriptional regulator [Methy... 302 4e-80 ref|YP_003051147.1| LysR family transcriptional regulator [Methy... 301 6e-80 >ref|YP_003773731.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61823.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 288/296 (97%), Positives = 292/296 (98%) Query: 1 MLNRLEMLRIFCAAADTGSFKEAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRIT 60 MLNRLEMLRIFCAAADTGSFK+AAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRIT Sbjct: 1 MLNRLEMLRIFCAAADTGSFKDAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRIT 60 Query: 61 SFGEALAERARESLRDLDGLFETEAASPADEMSGLVRLAAPSALGRSRLLPIVERLAQAH 120 SFGEALAERAR SLRDLDGLFET+ ASPADEMSGLVRLAAPS+LGRSRLLPIVERLAQAH Sbjct: 61 SFGEALAERARASLRDLDGLFETDTASPADEMSGLVRLAAPSSLGRSRLLPIVERLAQAH 120 Query: 121 PGLRFDLRLTDQRADVVGEKIDIGIRVGTVPDNRFVVRRLGKVRFHVVATPRFLRRHGAP 180 PGLRFDLRLTDQRADVVGEKIDIGIRVGTVPDNRFVVRRLGKVRF+VVATPRFLRRHG P Sbjct: 121 PGLRFDLRLTDQRADVVGEKIDIGIRVGTVPDNRFVVRRLGKVRFYVVATPRFLRRHGTP 180 Query: 181 EDTEALRTLPCTAMLDRGTGRPWPWLFAQENQWMADHARFLCDDSEGEYLLVRSGVAIGQ 240 EDTEALR LPCTAMLDRGTGRPWPWLFAQENQWMADHARFLCDDSEGEYLLVRSGVAIGQ Sbjct: 181 EDTEALRALPCTAMLDRGTGRPWPWLFAQENQWMADHARFLCDDSEGEYLLVRSGVAIGQ 240 Query: 241 IAGFLCEDDIAAGRLVPVMTDHEPDPWDMYLYRPQRGPVPPRLRLVFDTLVREFAE 296 IAGFLCEDDIAAGRLVPVMTDHEPDPWDMYLYRPQRGPVPPRLRLVFDTLVREFAE Sbjct: 241 IAGFLCEDDIAAGRLVPVMTDHEPDPWDMYLYRPQRGPVPPRLRLVFDTLVREFAE 296 >ref|ZP_01893949.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] gb|EDM48048.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] Length = 297 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 158/295 (53%), Positives = 206/295 (69%) Query: 1 MLNRLEMLRIFCAAADTGSFKEAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRIT 60 MLNRLEMLRIFC AA++ SFKEAA RLGISPQAVTRA++ELERLQGE+LFHRNTR +++T Sbjct: 1 MLNRLEMLRIFCTAAESRSFKEAANRLGISPQAVTRAVKELERLQGELLFHRNTRHIQVT 60 Query: 61 SFGEALAERARESLRDLDGLFETEAASPADEMSGLVRLAAPSALGRSRLLPIVERLAQAH 120 GE A A+E LR +D LF+T A +E+ G VR+AAP G L+P + L+ H Sbjct: 61 LVGEKFAAIAKERLRAVDELFQTSAPDSGNELQGRVRIAAPVGFGHQCLMPALMELSTVH 120 Query: 121 PGLRFDLRLTDQRADVVGEKIDIGIRVGTVPDNRFVVRRLGKVRFHVVATPRFLRRHGAP 180 P L DL L+D+R DVV EKIDIGIR+G + D+RF+ R+L K+ +VVA+P + R G P Sbjct: 121 PQLDIDLTLSDERVDVVDEKIDIGIRIGFMRDSRFIARQLAKINLYVVASPDLIDRVGRP 180 Query: 181 EDTEALRTLPCTAMLDRGTGRPWPWLFAQENQWMADHARFLCDDSEGEYLLVRSGVAIGQ 240 E L LP T ++DR TG+ WPW+F+ + QWM RF D+E E + V++G+ Q Sbjct: 181 ASIEDLNHLPVTGLVDRNTGKLWPWVFSMDRQWMPSITRFRSADAEAELMGVQNGLGFAQ 240 Query: 241 IAGFLCEDDIAAGRLVPVMTDHEPDPWDMYLYRPQRGPVPPRLRLVFDTLVREFA 295 I FL +D + +LV V+ + EP PWD+Y+YRPQRGPVP R+RLVFD LV + Sbjct: 241 IPDFLAQDLLRQEKLVRVLEEAEPVPWDLYIYRPQRGPVPQRIRLVFDHLVSRLS 295 >ref|ZP_01043422.1| transcriptional regulator, LysR family protein [Idiomarina baltica OS145] gb|EAQ31763.1| transcriptional regulator, LysR family protein [Idiomarina baltica OS145] Length = 300 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 155/296 (52%), Positives = 204/296 (68%) Query: 1 MLNRLEMLRIFCAAADTGSFKEAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRIT 60 MLNRLEMLRIFC AA++ SFKEAA RLGISPQAVTRA++ELERLQGE+LFHRNTR +++T Sbjct: 1 MLNRLEMLRIFCTAAESRSFKEAANRLGISPQAVTRAVKELERLQGELLFHRNTRHIQVT 60 Query: 61 SFGEALAERARESLRDLDGLFETEAASPADEMSGLVRLAAPSALGRSRLLPIVERLAQAH 120 GE A A+E LR +D LF+T + +E+ G VR+AAP G L+P + L+ H Sbjct: 61 LVGEKFAVIAKERLRAVDELFQTSVPNSGNELQGRVRIAAPVGFGHKCLMPALLELSTIH 120 Query: 121 PGLRFDLRLTDQRADVVGEKIDIGIRVGTVPDNRFVVRRLGKVRFHVVATPRFLRRHGAP 180 P L DL L+D+R DVV EKIDIGIR+G + D+RF+ R+L K+ +VVA+P + R G P Sbjct: 121 PQLDIDLTLSDERVDVVDEKIDIGIRIGFMRDSRFIARQLTKINMYVVASPDLINRVGRP 180 Query: 181 EDTEALRTLPCTAMLDRGTGRPWPWLFAQENQWMADHARFLCDDSEGEYLLVRSGVAIGQ 240 E L LP T ++DR TG+ WPW+F+ + QW RF D+E E + V++G+ Q Sbjct: 181 ASIEDLNHLPVTGLVDRNTGKLWPWVFSMDRQWTPSITRFRSADAEAELMGVQNGLGFAQ 240 Query: 241 IAGFLCEDDIAAGRLVPVMTDHEPDPWDMYLYRPQRGPVPPRLRLVFDTLVREFAE 296 I F +D + +LV V+ + EP PWD+Y+YRPQRGPVP R+RLVFD LV + Sbjct: 241 IPDFSGQDLLRQEKLVRVLEEIEPVPWDLYIYRPQRGPVPQRIRLVFDHLVSRLTK 296 >ref|YP_004039843.1| LysR family transcriptional regulator [Methylovorus sp. MP688] gb|ADQ84607.1| transcriptional regulator, LysR family [Methylovorus sp. MP688] Length = 305 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 150/297 (50%), Positives = 203/297 (68%), Gaps = 1/297 (0%) Query: 1 MLNRLEMLRIFCAAADTGSFKEAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRIT 60 M N+LEM+R+FCAAAD SFKEAA+RLGISPQAVTRAI++LE GE+LFHRNTRQ+RIT Sbjct: 1 MSNKLEMMRVFCAAADASSFKEAALRLGISPQAVTRAIKDLEYALGELLFHRNTRQIRIT 60 Query: 61 SFGEALAERARESLRDLDGLFETEAASPADEMSGLVRLAAPSALGRSRLLPIVERLAQAH 120 FG A AR++L D+D LF A S E GLVR+ P +GR+ LLP++ L+ ++ Sbjct: 61 EFGRGFAIEARKALADVDNLFTPGAGSKPSEFGGLVRITVPMGIGRTFLLPLLRDLSSSY 120 Query: 121 PGLRFDLRLTDQRADVVGEKIDIGIRVG-TVPDNRFVVRRLGKVRFHVVATPRFLRRHGA 179 PG++FD+RL+D ADV+ E+IDIGIRVG T+ DN F+ + +V F VA+P ++R G Sbjct: 121 PGIQFDIRLSDNIADVIDEQIDIGIRVGATLKDNGFIAKAASRVAFWNVASPALIKRTGK 180 Query: 180 PEDTEALRTLPCTAMLDRGTGRPWPWLFAQENQWMADHARFLCDDSEGEYLLVRSGVAIG 239 P + L LP T ++ +GR WPW+FA+ Q ++ L +DS+ E V G+ IG Sbjct: 181 PLTPQDLLHLPTTGLIAPSSGRAWPWMFARGQQLQINNQVLLTNDSQLEIQAVLDGIGIG 240 Query: 240 QIAGFLCEDDIAAGRLVPVMTDHEPDPWDMYLYRPQRGPVPPRLRLVFDTLVREFAE 296 QI + I GRLVP++ D+ +PW +Y+YRPQRGPV PR+R+VFD L E A+ Sbjct: 241 QIGSCMAIPHIREGRLVPLLEDYTAEPWTLYVYRPQRGPVAPRVRIVFDYLAEELAK 297 >ref|YP_003051147.1| LysR family transcriptional regulator [Methylovorus glucosetrophus SIP3-4] gb|ACT50620.1| transcriptional regulator, LysR family [Methylovorus glucosetrophus SIP3-4] Length = 305 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 150/297 (50%), Positives = 203/297 (68%), Gaps = 1/297 (0%) Query: 1 MLNRLEMLRIFCAAADTGSFKEAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRIT 60 M N+LEM+R+FCAAAD SFKEAA+RLGISPQAVTRAI++LE GE+LFHRNTRQ+RIT Sbjct: 1 MSNKLEMMRVFCAAADASSFKEAALRLGISPQAVTRAIKDLEYALGELLFHRNTRQIRIT 60 Query: 61 SFGEALAERARESLRDLDGLFETEAASPADEMSGLVRLAAPSALGRSRLLPIVERLAQAH 120 FG A AR++L D+D LF A S E GLVR+ P +GR+ LLP++ L+ ++ Sbjct: 61 EFGRGFALEARKALADVDNLFTPGAGSKPSEFGGLVRITVPMGIGRTFLLPLLRDLSSSY 120 Query: 121 PGLRFDLRLTDQRADVVGEKIDIGIRVG-TVPDNRFVVRRLGKVRFHVVATPRFLRRHGA 179 PG++FD+RL+D ADV+ E+IDIGIRVG T+ DN F+ + +V F VA+P ++R G Sbjct: 121 PGIQFDIRLSDNIADVIDEQIDIGIRVGATLKDNGFIAKAASRVAFWNVASPALIKRIGK 180 Query: 180 PEDTEALRTLPCTAMLDRGTGRPWPWLFAQENQWMADHARFLCDDSEGEYLLVRSGVAIG 239 P + L LP T ++ +GR WPW+FA+ Q ++ L +DS+ E V G+ IG Sbjct: 181 PLTPQDLLHLPTTGLIAPSSGRAWPWMFARGQQLQINNQVLLTNDSQLEIQAVLDGIGIG 240 Query: 240 QIAGFLCEDDIAAGRLVPVMTDHEPDPWDMYLYRPQRGPVPPRLRLVFDTLVREFAE 296 QI + I GRLVP++ D+ +PW +Y+YRPQRGPV PR+R+VFD L E A+ Sbjct: 241 QIGSCMAIPHIREGRLVPLLEDYTAEPWTLYVYRPQRGPVAPRVRIVFDYLAEELAK 297