BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0191.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002945294.1| RpiR family transcriptional regulator [Vario... 387 e-106 ref|YP_556443.1| RpiR family transcriptional regulator [Burkhold... 268 6e-70 ref|YP_001369953.1| RpiR family transcriptional regulator [Ochro... 249 3e-64 ref|YP_764935.1| putative DNA-binding protein [Rhizobium legumin... 244 1e-62 ref|YP_002540296.1| hypothetical protein Arad_7133 [Agrobacteriu... 233 4e-59 >ref|YP_002945294.1| RpiR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS20028.1| transcriptional regulator, RpiR family [Variovorax paradoxus S110] Length = 278 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 201/278 (72%), Positives = 239/278 (85%), Gaps = 1/278 (0%) Query: 4 SAESFVRRVRSKLDELSSTERQLADFLLEFPGELASYAGNELAQLAGVSPSTVSRFIRRV 63 SA+SFVRRVRS+LD+L +TERQLADF+LEFPGELASYAGNELA+LAGVSPSTVSRFIRR+ Sbjct: 2 SADSFVRRVRSQLDQLPATERQLADFVLEFPGELASYAGNELAELAGVSPSTVSRFIRRI 61 Query: 64 GYESYEEARRHVREEQETGSPLFHASSSGAARQVRSVAAHFQQSQQNLAATFERLSDATL 123 GYE+YEEARRHVREE++TGSPLF +++ A+++ VA HFQQSQ NLA TFERL D + Sbjct: 62 GYENYEEARRHVREEKQTGSPLFQ-NATEASKRGHLVATHFQQSQANLANTFERLDDRQM 120 Query: 124 AEIARAIVNAPHVLIFGSRSSQAFALYLRWQIIQVLPRVTCLPGPGETLAEYTAGLSERD 183 AEI +AI+ A VLIFG+RSS AFALYLRWQIIQV+PRVT +PGPGETLAE+ AGL ERD Sbjct: 121 AEIVKAIIGAGQVLIFGTRSSHAFALYLRWQIIQVVPRVTAIPGPGETLAEHLAGLGERD 180 Query: 184 CVIVFGTRRQTGQMDRLLEAATRAGSYLLYISDQASADYALATWSLQAHCRGPGSLDNHV 243 CVIVFG RRQT Q+D LL AA RAG+ ++YISD+AS D+A ATWSLQ CRGPG LDNH Sbjct: 181 CVIVFGLRRQTRQLDTLLAAAHRAGAKIVYISDRASPDFADATWSLQCDCRGPGLLDNHA 240 Query: 244 GVMALCDLLSTLVIEASGAAGRKRLAAVEQEHEELGDF 281 VM +CDL++T+V+EA+G+AGRKRLAA+E HEE G+ Sbjct: 241 AVMGVCDLIATMVVEAAGSAGRKRLAAIELGHEENGEL 278 >ref|YP_556443.1| RpiR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE37093.1| transcriptional regulator, RpiR family [Burkholderia xenovorans LB400] Length = 280 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 146/280 (52%), Positives = 192/280 (68%), Gaps = 1/280 (0%) Query: 1 MKPSAESFVRRVRSKLDELSSTERQLADFLLEFPGELASYAGNELAQLAGVSPSTVSRFI 60 M SFV RVR+ +D LS+TER+LA+F+LEFPG+LASY EL +LA VS +TVSRF Sbjct: 1 MPAKPRSFVGRVRATMDALSATERRLAEFVLEFPGDLASYTAAELGKLANVSNATVSRFF 60 Query: 61 RRVGYESYEEARRHVREEQETGSPLFHASSSGAARQVRSVAAHFQQSQQNLAATFERLSD 120 R +GY SYEEARRHVR++++ G+ L + + A + + VAAH Q NL TF LSD Sbjct: 61 RHLGYSSYEEARRHVRDDKKDGAALL-LTGADAGQDEQGVAAHAQLGIANLTRTFAELSD 119 Query: 121 ATLAEIARAIVNAPHVLIFGSRSSQAFALYLRWQIIQVLPRVTCLPGPGETLAEYTAGLS 180 A L EIA A+V A VL+FG RSSQAFA Y RWQI+QV+ RV LPGPGETL E+ GL Sbjct: 120 AMLDEIAGAVVGAQQVLVFGFRSSQAFASYFRWQILQVVERVIALPGPGETLGEHLVGLD 179 Query: 181 ERDCVIVFGTRRQTGQMDRLLEAATRAGSYLLYISDQASADYALATWSLQAHCRGPGSLD 240 + VIVFG RR+ Q D ++E A RAG+ +LY++D++S A ATW++ PG LD Sbjct: 180 RKSVVIVFGLRRRVPQTDAVIEYAARAGARVLYVTDRSSPARAGATWTIICETSAPGPLD 239 Query: 241 NHVGVMALCDLLSTLVIEASGAAGRKRLAAVEQEHEELGD 280 NHV V+ +C L+T V + + + GRKRL+ +E H+ LG+ Sbjct: 240 NHVAVLGVCGALATKVFQQASSQGRKRLSGIESAHDALGE 279 >ref|YP_001369953.1| RpiR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gb|ABS14124.1| transcriptional regulator, RpiR family [Ochrobactrum anthropi ATCC 49188] Length = 280 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 131/272 (48%), Positives = 183/272 (67%), Gaps = 1/272 (0%) Query: 1 MKPSAESFVRRVRSKLDELSSTERQLADFLLEFPGELASYAGNELAQLAGVSPSTVSRFI 60 MKP+ +SF+ RVR +DEL E++L +F+ +FPGELASY+ +ELA LA VS +TV+RF+ Sbjct: 1 MKPTEKSFLTRVRDVMDELPPAEKRLGEFVCDFPGELASYSASELAALAHVSNATVTRFV 60 Query: 61 RRVGYESYEEARRHVREEQETGSPLFHASSSGAARQVRSVAAHFQQSQQNLAATFERLSD 120 +R+GY++YEE+RRH REE++TGS LF SS+ A +S+++H Q NL TF + + Sbjct: 61 QRLGYDTYEESRRHAREEKQTGSRLF-LSSATDAESGQSLSSHVGQGIANLEKTFLSIRE 119 Query: 121 ATLAEIARAIVNAPHVLIFGSRSSQAFALYLRWQIIQVLPRVTCLPGPGETLAEYTAGLS 180 + + A++ A +FG RSSQ FA YL+WQ+IQV+ + +PGPG+TL EY A +S Sbjct: 120 TQIDAVVEAMLGARKTWVFGFRSSQPFAAYLQWQMIQVVDNIVAVPGPGQTLGEYIASIS 179 Query: 181 ERDCVIVFGTRRQTGQMDRLLEAATRAGSYLLYISDQASADYALATWSLQAHCRGPGSLD 240 D VIVF RR+ +MD +L A + G+ LLYI+D+ + A A W PG L Sbjct: 180 PDDMVIVFALRRRIAKMDDILAAIEKRGAKLLYITDEGAPFRASAQWHFHCQTLAPGPLF 239 Query: 241 NHVGVMALCDLLSTLVIEASGAAGRKRLAAVE 272 NHV VMALC LL+T IE +GA+GRKRL +E Sbjct: 240 NHVAVMALCHLLTTRAIEKAGASGRKRLRDIE 271 >ref|YP_764935.1| putative DNA-binding protein [Rhizobium leguminosarum bv. viciae 3841] emb|CAK12137.1| putative DNA-binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 279 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 135/276 (48%), Positives = 179/276 (64%), Gaps = 1/276 (0%) Query: 3 PSAESFVRRVRSKLDELSSTERQLADFLLEFPGELASYAGNELAQLAGVSPSTVSRFIRR 62 P SF+ RVR L L E++LA+F+ +FPGELASY+ ELA LA VS +TV+RFI+R Sbjct: 2 PKDRSFLFRVREALPNLHPAEKRLAEFVCDFPGELASYSAQELAALAHVSKATVTRFIQR 61 Query: 63 VGYESYEEARRHVREEQETGSPLFHASSSGAARQVRSVAAHFQQSQQNLAATFERLSDAT 122 +GYE+YEEARRH REE++TGS LF ASS+ AA ++SV AH Q NL ATF + D+ Sbjct: 62 LGYETYEEARRHAREEKQTGSRLFLASSANAA-SIQSVEAHIAQGIANLEATFISIPDSQ 120 Query: 123 LAEIARAIVNAPHVLIFGSRSSQAFALYLRWQIIQVLPRVTCLPGPGETLAEYTAGLSER 182 + A AI++A V + G RSS FA YL+WQ+IQV+ + +PG G+TL E+ L E+ Sbjct: 121 IEAAAEAILHARKVWVVGFRSSHPFASYLQWQLIQVIENIVAIPGSGQTLGEHFVSLREK 180 Query: 183 DCVIVFGTRRQTGQMDRLLEAATRAGSYLLYISDQASADYALATWSLQAHCRGPGSLDNH 242 D V+VF RR+ QMD +LE R+ + LLY++D+++ A W Q PG L NH Sbjct: 181 DVVVVFAMRRRIAQMDAILEQIRRSKANLLYVTDESAPFETAAGWHFQCQTLAPGPLFNH 240 Query: 243 VGVMALCDLLSTLVIEASGAAGRKRLAAVEQEHEEL 278 VMALC LL T E +G GRKRL +E +E L Sbjct: 241 TSVMALCHLLITRCFEKAGVEGRKRLRDIEALNENL 276 >ref|YP_002540296.1| hypothetical protein Arad_7133 [Agrobacterium radiobacter K84] gb|ACM28701.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 279 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 122/276 (44%), Positives = 177/276 (64%), Gaps = 1/276 (0%) Query: 3 PSAESFVRRVRSKLDELSSTERQLADFLLEFPGELASYAGNELAQLAGVSPSTVSRFIRR 62 P SF+ RVR L EL ER+L DF+ +FPGELASY+ ELA LA VS +TVSRF++R Sbjct: 2 PKETSFLFRVRQALPELHPAERRLGDFVCDFPGELASYSAQELAALAHVSKATVSRFVQR 61 Query: 63 VGYESYEEARRHVREEQETGSPLFHASSSGAARQVRSVAAHFQQSQQNLAATFERLSDAT 122 +GY +YEEARRH R +++TGS LF ++S+ A+ +S+ AH Q+ N+ ATF ++D Sbjct: 62 LGYANYEEARRHARAQKQTGSRLFLSTSTDAS-TTQSIKAHIAQAIANIDATFLAINDTQ 120 Query: 123 LAEIARAIVNAPHVLIFGSRSSQAFALYLRWQIIQVLPRVTCLPGPGETLAEYTAGLSER 182 + +A A++NA V + G RS+ FA YL+WQ+ QV+ + +PGPG+TL E+ + E+ Sbjct: 121 IDAVADAMLNARKVWVVGFRSNHPFASYLQWQLTQVIENIVAIPGPGQTLGEHLVSVQEQ 180 Query: 183 DCVIVFGTRRQTGQMDRLLEAATRAGSYLLYISDQASADYALATWSLQAHCRGPGSLDNH 242 D V++FG RR+ +MD L+E R+ + LYI+D+ + A W PG L NH Sbjct: 181 DVVVLFGLRRRIARMDLLIEQILRSKARFLYITDEGAPVLTSAEWHFLCQTLAPGPLFNH 240 Query: 243 VGVMALCDLLSTLVIEASGAAGRKRLAAVEQEHEEL 278 VMALC LL T +E + +GR+RL +E ++ L Sbjct: 241 ASVMALCHLLITRCVEKAEVSGRRRLRNIEALNDSL 276