BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0181.p (555 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773744.1| HD-GYP domain-containing protein [Herbaspiri... 940 0.0 ref|YP_001475352.1| GAF containing protein [Shewanella sediminis... 604 e-170 ref|ZP_08505395.1| hypothetical protein METUNv1_02457 [Methylove... 603 e-170 ref|XP_002537069.1| conserved hypothetical protein [Ricinus comm... 588 e-166 ref|YP_003558248.1| GAF domain-containing protein [Shewanella vi... 585 e-165 >ref|YP_003773744.1| HD-GYP domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ61836.1| HD-GYP domain containing protein [Herbaspirillum seropedicae SmR1] Length = 552 Score = 940 bits (2430), Expect = 0.0, Method: Composition-based stats. Identities = 473/545 (86%), Positives = 507/545 (93%), Gaps = 1/545 (0%) Query: 12 PTTGEHRDIAYRLERLTELCRELGSQRDIPLLLERILLTARDITRADGGTLYRTTDHGDA 71 P HR+IAYRLERLTELCRELGS RDIPLLLERILLTA+DIT+ADGGTLYR + GD+ Sbjct: 8 PAAERHRNIAYRLERLTELCRELGSSRDIPLLLERILLTAKDITQADGGTLYRINEGGDS 67 Query: 72 LRFDISVNQTLKMHQGGSSGRAVSIPDIALTLPDGQPNLAAVAAYAANTRESVNIPDVYQ 131 LRF ISVN TLKMHQGGSSG+A+SIPDIAL LPDGQPNL+AVAAYAANTR+SVNI DVYQ Sbjct: 68 LRFYISVNDTLKMHQGGSSGKAISIPDIALRLPDGQPNLSAVAAYAANTRKSVNIADVYQ 127 Query: 132 -ASGFNFNGMRLFDEKYGYRSKSILTVPMQDHEGELVGVLQLINAIDPDSGVPVPFSETD 190 +SGFNFNGMRLFDEKYGY+SKS LTVPM+DHEGELVGVLQLINAIDP +G P+PFSETD Sbjct: 128 VSSGFNFNGMRLFDEKYGYQSKSFLTVPMEDHEGELVGVLQLINAIDPATGAPLPFSETD 187 Query: 191 QRFIEALASQAAMAMTNQQLIARLENLFESLIKLINIGIGEKSPHTGRHCEQVPQLAMML 250 Q FIEALASQAAMAMTNQQLI RLE LFESLI+LINIGIGEKSPHTGRHCEQVP+LAMML Sbjct: 188 QHFIEALASQAAMAMTNQQLIQRLEQLFESLIRLINIGIGEKSPHTGRHCEQVPELAMML 247 Query: 251 AEAAHNTTEGPLADFRMTDADRRELWLAALLHDCGKIGTPSHIVEKATKLETIFDRIHLI 310 AEAAHN TEGPLADF M++ADRRELWLAALLHDCGKI TP+HIVEKATKLETIFDRIHL+ Sbjct: 248 AEAAHNATEGPLADFHMSEADRRELWLAALLHDCGKISTPTHIVEKATKLETIFDRIHLV 307 Query: 311 DTRFEVLKRDAQIRVLQEKLALGAALTPERSAELDAGLQAEFLQMEDERAFLRRINYGNE 370 +TR EVLKRDA+IRVLQEKLALGAAL +R+AELDAGL AE Q++ ERAFLR+IN G E Sbjct: 308 ETRIEVLKRDAEIRVLQEKLALGAALDAQRAAELDAGLAAELAQLDLERAFLRKINVGTE 367 Query: 371 GMRAEDQQRVLDIAERSWRGPDGQIRKLLDEEEAGNLRIRAGTLNDAERAIINNHIVITI 430 GMR EDQQRVLDIA+RSWRGPDGQ+R LLDEEE+ NLRIRAGTLNDAER IINNHIVITI Sbjct: 368 GMRPEDQQRVLDIAQRSWRGPDGQLRPLLDEEESANLRIRAGTLNDAERQIINNHIVITI 427 Query: 431 KMLESLPWPKQLARVTEFAGGHHERMDGKGYPKGLTREQMSVQARIMAVADIFEAVTAAD 490 KMLESLPWPKQLARVTEFAGGHHERMDGKGYPKGLTREQMSVQARIMAVADIFEAVTAAD Sbjct: 428 KMLESLPWPKQLARVTEFAGGHHERMDGKGYPKGLTREQMSVQARIMAVADIFEAVTAAD 487 Query: 491 RPYKRGNTLNEAVDILAGFKARNHIDPDIFDLFVRERIYEKYAEQFMHPSQIDPVDLSRI 550 RPYKRGNTLNEAV+ILAGFKAR+HIDPD+FDLFVRERIYEKYAE+FMHPSQID VDLSRI Sbjct: 488 RPYKRGNTLNEAVEILAGFKARDHIDPDLFDLFVRERIYEKYAEKFMHPSQIDEVDLSRI 547 Query: 551 PGHGG 555 PG G Sbjct: 548 PGFGA 552 >ref|YP_001475352.1| GAF containing protein [Shewanella sediminis HAW-EB3] gb|ABV38224.1| GAF containing protein [Shewanella sediminis HAW-EB3] Length = 540 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 309/537 (57%), Positives = 388/537 (72%), Gaps = 6/537 (1%) Query: 17 HRDIAYRLERLTELCRELGSQRDIPLLLERILLTARDITRADGGTLYRTTDHGDALRFDI 76 ++ IA RL+ LT L L ++I +LLERIL TA++IT ADGGTLYR + L FDI Sbjct: 6 NKQIAERLQHLTTLSIALNDIKNIEVLLERILQTAKNITHADGGTLYRVSADKKYLEFDI 65 Query: 77 SVNQTLKMHQGGSSGRAVSIPDIALTLPDGQPNLAAVAAYAANTRESVNIPDVYQASGFN 136 N +L +H GG+ ++ + I L+L + +PNL AV AYAAN +ESVNI VY FN Sbjct: 66 LFNDSLDLHFGGTLEKSEQMRSIPLSLDNAEPNLEAVVAYAANRKESVNIEHVYDTPLFN 125 Query: 137 FNGMRLFDEKYGYRSKSILTVPMQDHEGELVGVLQLINAIDPDSGVPVPFSETDQRFIEA 196 F GMR FDE YGY +S+LTVPM DH ELVGVLQL+N+ P S PFS TDQ FIEA Sbjct: 126 FLGMRKFDEFYGYHCQSLLTVPMLDHNSELVGVLQLVNSKAPFSHQVQPFSMTDQVFIEA 185 Query: 197 LASQAAMAMTNQQLIARLENLFESLIKLINIGIGEKSPHTGRHCEQVPQLAMMLAEAAHN 256 L SQAA+A+TNQ+LI +LE+L ESL+ LINIGI EKSP+TGRHC+QVP+L MMLA+AA Sbjct: 186 LTSQAAIAITNQELILQLEDLLESLVNLINIGIDEKSPNTGRHCQQVPKLTMMLADAAQK 245 Query: 257 TTEGPLADFRMTDADRRELWLAALLHDCGKIGTPSHIVEKATKLETIFDRIHLIDTRFEV 316 T EG L DF M+ ++R ELWLA +LHDCGKI TP H++EKATKL+TIFDRIHLID RFE+ Sbjct: 246 TDEGALKDFAMSMSERYELWLAGMLHDCGKITTPVHVIEKATKLQTIFDRIHLIDARFEI 305 Query: 317 LKRDAQIRVLQEKLALGAALTPERSAELDAGLQAEFLQMEDERAFLRRINYGNEGMRAED 376 L+RD +I L+++ A G S L L+ + + ED+R FL N G+E M+ ED Sbjct: 306 LRRDVEIHYLKQQAAQGP------SNRLSRELECKLERFEDDRTFLAYANIGSERMKDED 359 Query: 377 QQRVLDIAERSWRGPDGQIRKLLDEEEAGNLRIRAGTLNDAERAIINNHIVITIKMLESL 436 QRV IA +W G + LL+EEE NL I AGTL + ER IINNHI +TI+MLE+L Sbjct: 360 LQRVASIANYTWVDQQGNTQTLLNEEEVENLMIPAGTLTNEERKIINNHISLTIRMLETL 419 Query: 437 PWPKQLARVTEFAGGHHERMDGKGYPKGLTREQMSVQARIMAVADIFEAVTAADRPYKRG 496 PWPK L + EFAGGHHERMDGKGYP+GL E+MSVQARIMA+ADIFEA+TA DRPYK G Sbjct: 420 PWPKHLQHIPEFAGGHHERMDGKGYPRGLRGEEMSVQARIMAIADIFEALTAKDRPYKTG 479 Query: 497 NTLNEAVDILAGFKARNHIDPDIFDLFVRERIYEKYAEQFMHPSQIDPVDLSRIPGH 553 TL+E++ IL F HIDP++F +FV++++Y +YA QFM +QID VD ++IPG+ Sbjct: 480 KTLSESLRILGKFSLNGHIDPELFHIFVKQKVYLEYANQFMDSAQIDEVDETQIPGY 536 >ref|ZP_08505395.1| hypothetical protein METUNv1_02457 [Methyloversatilis universalis FAM5] gb|EGK71071.1| hypothetical protein METUNv1_02457 [Methyloversatilis universalis FAM5] Length = 544 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 304/537 (56%), Positives = 397/537 (73%), Gaps = 1/537 (0%) Query: 18 RDIAYRLERLTELCRELGSQRDIPLLLERILLTARDITRADGGTLYRTTDHGDALRFDIS 77 +D+ RLE L E+ L ++R+I LLE+ILL A+ IT ADGGTLYRT D G LRF+I Sbjct: 5 QDLLRRLEDLNEIGAALSNERNIDALLEKILLAAKAITHADGGTLYRTDDSGTHLRFEIM 64 Query: 78 VNQTLKMHQGGSSGRAVSIPDIALTLPDGQPNLAAVAAYAANTRESVNIPDVYQASGFNF 137 ++ + GG+SG+ + P + L L DG PNL+ VAAYAA R++VNI D Y A GF+F Sbjct: 65 RTDSIGIAMGGTSGKRIVFPPLPLHLADGAPNLSMVAAYAALKRQTVNIADAYTAEGFDF 124 Query: 138 NGMRLFDEKYGYRSKSILTVPMQDHEGELVGVLQLINAIDPDSGVPVPFSETDQRFIEAL 197 +G R FD + GYRS S LTVPM +HEG ++GVLQLINA+DP +G FS++D++ E+L Sbjct: 125 SGTRAFDARTGYRSTSFLTVPMMNHEGRVIGVLQLINALDPVTGAVGVFSDSDRKLAESL 184 Query: 198 ASQAAMAMTNQQLIARLENLFESLIKLINIGIGEKSPHTGRHCEQVPQLAMMLAEAAHNT 257 ASQAA+A+TN+ L+++LE LFES I LIN I EKSP+TG HC++VP L MMLAEA ++T Sbjct: 185 ASQAAIALTNRLLVSQLEALFESFITLINNAIDEKSPYTGGHCQRVPTLTMMLAEAVNDT 244 Query: 258 TEGPLADFRMTDADRRELWLAALLHDCGKIGTPSHIVEKATKLETIFDRIHLIDTRFEVL 317 TEGPLADF M+DADR EL +A LLHDCGK+ TP H+V+KATKL+TIFDRI L+DTRFE++ Sbjct: 245 TEGPLADFTMSDADRYELKIAGLLHDCGKVTTPVHVVDKATKLQTIFDRIALVDTRFELI 304 Query: 318 KRDAQIRVLQEKLALGAALTPERSAELDAGLQAEFLQMEDERAFLRRINYGNEGMRAEDQ 377 +RD ++ L+ +++ G +P A+++ + +++ +RAFL N G+E M D Sbjct: 305 RRDVELSALRSRVSAGPDASPVVLAQIERHGEDRLRELDADRAFLHHANIGSERMNDADV 364 Query: 378 QRVLDIAER-SWRGPDGQIRKLLDEEEAGNLRIRAGTLNDAERAIINNHIVITIKMLESL 436 +RV IA R SW GQ L ++E NL IRAGTL AER +INNHIV TI+MLESL Sbjct: 365 ERVHAIARRWSWSDTLGQTHACLSDDEIENLTIRAGTLTGAEREVINNHIVSTIRMLESL 424 Query: 437 PWPKQLARVTEFAGGHHERMDGKGYPKGLTREQMSVQARIMAVADIFEAVTAADRPYKRG 496 PWP+ L+ V E+AGGHHERMDGKGYP+GLTR+QMSVQAR+M +ADIFEA+TA DRPYKR Sbjct: 425 PWPRHLSNVPEYAGGHHERMDGKGYPRGLTRDQMSVQARVMGIADIFEALTAKDRPYKRP 484 Query: 497 NTLNEAVDILAGFKARNHIDPDIFDLFVRERIYEKYAEQFMHPSQIDPVDLSRIPGH 553 L+EA+ IL F+ HIDPD+FD+FVR+++Y +YAE F+ P QID VDLS IPG+ Sbjct: 485 MKLSEALHILGKFRLNGHIDPDLFDVFVRKQVYLRYAETFLDPEQIDMVDLSAIPGY 541 >ref|XP_002537069.1| conserved hypothetical protein [Ricinus communis] gb|EEF25314.1| conserved hypothetical protein [Ricinus communis] Length = 467 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 300/470 (63%), Positives = 367/470 (78%), Gaps = 5/470 (1%) Query: 84 MHQGGSSGRAVSIPDIALTLPDGQPNLAAVAAYAANTRESVNIPDVYQASGFNFNGMRLF 143 ++QGG+SG + +P + L G N+ AVAAYAAN +SVNI DVYQA FNF+GMR F Sbjct: 1 IYQGGASGNTIDLPPVPLYDQYGNKNITAVAAYAANFHQSVNIADVYQADVFNFSGMRSF 60 Query: 144 DEKYGYRSKSILTVPMQDHEGELVGVLQLINAIDPDSGVPVPFSETDQRFIEALASQAAM 203 D+ +GYR+KSILTVPM +HEGEL+GVLQLINA D D+G FS+TDQRFIEALA+QAA+ Sbjct: 61 DQTFGYRTKSILTVPMTNHEGELIGVLQLINARDRDTGEICAFSDTDQRFIEALAAQAAV 120 Query: 204 AMTNQQLIARLENLFESLIKLINIGIGEKSPHTGRHCEQVPQLAMMLAEAAHNTTEGPLA 263 A+TNQQL+ ++E L E+L+ LINIGI EKSP+TGRHC+ VP+L MMLAEA H T GP+A Sbjct: 121 ALTNQQLVVQMEELLEALVNLINIGIDEKSPYTGRHCQFVPELTMMLAEAVHETHIGPMA 180 Query: 264 DFRMTDADRRELWLAALLHDCGKIGTPSHIVEKATKLETIFDRIHLIDTRFEVLKRDAQI 323 FRM+D DRRELWLA LLHDCGKI TP H+V+KATKLETIFDRIH+IDTRFEVL RDA+I Sbjct: 181 SFRMSDRDRRELWLAGLLHDCGKITTPVHVVDKATKLETIFDRIHMIDTRFEVLLRDAEI 240 Query: 324 RVLQEKLALGAALTPERSAELDAGLQAEFLQMEDERAFLRRINYGNEGMRAEDQQRVLDI 383 R L+E+ GA +R+A D L +E ++ +R FLR N G+EGM E +RV I Sbjct: 241 RALREQCEPGA----DRAAIADR-LASEQARLRADRDFLRHANVGSEGMSPEAMERVHRI 295 Query: 384 AERSWRGPDGQIRKLLDEEEAGNLRIRAGTLNDAERAIINNHIVITIKMLESLPWPKQLA 443 A W GPDG +R LDE+E NL +R GTLND ER IINNHIV+TI+MLESLPWPK L Sbjct: 296 AAYRWTGPDGIVRDFLDEDEVRNLTVRFGTLNDDERKIINNHIVVTIRMLESLPWPKHLK 355 Query: 444 RVTEFAGGHHERMDGKGYPKGLTREQMSVQARIMAVADIFEAVTAADRPYKRGNTLNEAV 503 V E+AGGHHERMDGKGYP+GLTREQMSVQAR+MA+ADIFEA+TA DRPYK+G TL+E++ Sbjct: 356 NVPEYAGGHHERMDGKGYPRGLTREQMSVQARVMAIADIFEALTARDRPYKKGKTLSESL 415 Query: 504 DILAGFKARNHIDPDIFDLFVRERIYEKYAEQFMHPSQIDPVDLSRIPGH 553 IL F HIDPD+FD+FVR+++Y K+A + + PSQID VD + IPG+ Sbjct: 416 HILGKFALNGHIDPDLFDIFVRQKVYLKFARKNLDPSQIDHVDEAAIPGY 465 >ref|YP_003558248.1| GAF domain-containing protein [Shewanella violacea DSS12] dbj|BAJ03470.1| GAF domain protein [Shewanella violacea DSS12] Length = 544 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 302/537 (56%), Positives = 381/537 (70%), Gaps = 6/537 (1%) Query: 17 HRDIAYRLERLTELCRELGSQRDIPLLLERILLTARDITRADGGTLYRTTDHGDALRFDI 76 ++ I RL+ LT L L ++I LLERIL TAR IT ADGGTLYR + L FDI Sbjct: 12 NKQIKERLQHLTTLSIALNDIKNIKFLLERILHTARTITNADGGTLYRVSSDKKYLEFDI 71 Query: 77 SVNQTLKMHQGGSSGRAVSIPDIALTLPDGQPNLAAVAAYAANTRESVNIPDVYQASGFN 136 +N +L +H GGS ++ + I L L +G+PNL AV AYAAN +ESVNI VY FN Sbjct: 72 LINASLDLHFGGSREKSDKMRSIPLALDNGEPNLEAVVAYAANRKESVNIEHVYDTPIFN 131 Query: 137 FNGMRLFDEKYGYRSKSILTVPMQDHEGELVGVLQLINAIDPDSGVPVPFSETDQRFIEA 196 F+GMR FDE Y Y +S+L VPM DH ELVGVLQL+N++D SG FS TDQ FIEA Sbjct: 132 FSGMRRFDEVYDYHCQSLLAVPMLDHNSELVGVLQLVNSMDNSSGEIQAFSTTDQLFIEA 191 Query: 197 LASQAAMAMTNQQLIARLENLFESLIKLINIGIGEKSPHTGRHCEQVPQLAMMLAEAAHN 256 L+SQAA+A+TNQ+LI +LE+L ESL+ LINIGI EKS +TGRHC+QVP+L MMLA+A + Sbjct: 192 LSSQAAIAITNQELILQLEDLLESLVNLINIGIDEKSANTGRHCQQVPKLTMMLADAVQS 251 Query: 257 TTEGPLADFRMTDADRRELWLAALLHDCGKIGTPSHIVEKATKLETIFDRIHLIDTRFEV 316 EGPL DF M+ +R ELWLA +LHDCGKI TP H++EKATKL+TIFDRI LID RFE+ Sbjct: 252 MEEGPLKDFSMSANERHELWLAGMLHDCGKITTPVHVIEKATKLQTIFDRIDLIDARFEI 311 Query: 317 LKRDAQIRVLQEKLALGAALTPERSAELDAGLQAEFLQMEDERAFLRRINYGNEGMRAED 376 L RDA+IR L++ LA +++P+ + EL L++ + +R FL N G E M+ ED Sbjct: 312 LGRDAEIRYLKQ-LAQD-SISPQLTQELHLELES----LRSDRDFLAHANIGCERMKDED 365 Query: 377 QQRVLDIAERSWRGPDGQIRKLLDEEEAGNLRIRAGTLNDAERAIINNHIVITIKMLESL 436 RV+ IA +W G + L + E NL+IR GTL ER IINNHI +TI+MLE+L Sbjct: 366 LDRVMSIASGTWVDYKGVTQAFLTDNEVENLQIRGGTLTGDERKIINNHISVTIRMLETL 425 Query: 437 PWPKQLARVTEFAGGHHERMDGKGYPKGLTREQMSVQARIMAVADIFEAVTAADRPYKRG 496 PWP L + E+AGGHHERMDGKGYP+GL E MSVQARIMA+ADIFEA+TA DRPYK G Sbjct: 426 PWPAHLQDIPEYAGGHHERMDGKGYPRGLRGEDMSVQARIMAIADIFEALTARDRPYKTG 485 Query: 497 NTLNEAVDILAGFKARNHIDPDIFDLFVRERIYEKYAEQFMHPSQIDPVDLSRIPGH 553 TL+E++ IL F HIDPD+F +FV +++Y +YA ++MH QID VD S+IPG+ Sbjct: 486 KTLSESLFILGKFSLNGHIDPDLFRIFVGKKVYLQYAHKYMHGVQIDEVDESKIPGY 542