BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0179.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02466803.1| DNA-binding response regulator [Burkholderia ... 134 5e-30 ref|YP_105470.1| DNA-binding response regulator [Burkholderia ma... 132 2e-29 ref|YP_111501.1| two-component response regulator protein [Burkh... 131 4e-29 ref|ZP_02486145.1| DNA-binding response regulator [Burkholderia ... 131 4e-29 ref|YP_439069.1| DNA-binding response regulator [Burkholderia th... 129 3e-28 >ref|ZP_02466803.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 244 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 70/138 (50%), Positives = 92/138 (66%), Gaps = 2/138 (1%) Query: 1 MSITPPPRILVVDDDQALRQLLVDYLSGHGLIVDSAATGAQAQAAVQATQYDMVLLDLGL 60 M+ T P +LVV+DD+ LR++L +YLSGHG+ VD T A A +V+ +Y+MVLLDLGL Sbjct: 1 MNATRSPAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAADSVERREYEMVLLDLGL 60 Query: 61 PDVDGAELARGWRAAGGLSIICVTGRNEEADMVMGLELGADDYITKPFSPREVLXSCDA- 119 PD DG ++ WR + +ICVTGR+EEAD +MGLE GADDY+ KP+S REVL A Sbjct: 61 PDGDGIDVLLRWRDSQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRAL 120 Query: 120 -RPASAGLSLRRLGAQPQ 136 R A + R G P+ Sbjct: 121 WRRAEPSTTPVRRGRHPR 138 >ref|YP_105470.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] ref|YP_990210.1| DNA-binding response regulator [Burkholderia mallei SAVP1] ref|YP_001024528.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] ref|YP_001078852.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] ref|ZP_02269533.1| DNA-binding response regulator VirG [Burkholderia mallei PRL-20] ref|ZP_02407395.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] ref|ZP_02460149.1| DNA-binding response regulator [Burkholderia pseudomallei 9] ref|ZP_02494285.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] ref|ZP_02502520.1| DNA-binding response regulator [Burkholderia pseudomallei 112] ref|ZP_03456614.1| DNA-binding response regulator [Burkholderia pseudomallei 576] ref|ZP_03791662.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] ref|ZP_04521528.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] ref|ZP_04610537.1| DNA-binding response regulator VirG [Burkholderia mallei GB8 horse 4] ref|ZP_04971835.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gb|AAU46907.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gb|ABM49028.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gb|ABM99704.1| DNA-binding response regulator VirG [Burkholderia mallei NCTC 10229] gb|ABO03294.1| DNA-binding response regulator VirG [Burkholderia mallei NCTC 10247] gb|EDK82710.1| DNA-binding response regulator [Burkholderia mallei 2002721280] tpg|DAA06010.1| TPA_exp: VirG [Burkholderia mallei] gb|EEC31751.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gb|EEH27970.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gb|EEP50442.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gb|EEP84192.1| DNA-binding response regulator VirG [Burkholderia mallei GB8 horse 4] gb|EES42950.1| DNA-binding response regulator VirG [Burkholderia mallei PRL-20] Length = 245 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 2/137 (1%) Query: 2 SITPPPRILVVDDDQALRQLLVDYLSGHGLIVDSAATGAQAQAAVQATQYDMVLLDLGLP 61 ++T P +LVV+DD+ LR++L +YLSGHG+ VD T A A +V +Y+MVLLDLGLP Sbjct: 3 NVTRSPAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLP 62 Query: 62 DVDGAELARGWRAAGGLSIICVTGRNEEADMVMGLELGADDYITKPFSPREVLXSCDA-- 119 D DG ++ WR +ICVTGR+EEAD +MGLE GADDY+ KP+S REVL A Sbjct: 63 DGDGIDVLLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRALW 122 Query: 120 RPASAGLSLRRLGAQPQ 136 R A + R G P+ Sbjct: 123 RRAEPSTTPVRRGRHPR 139 >ref|YP_111501.1| two-component response regulator protein [Burkholderia pseudomallei K96243] ref|YP_335690.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] ref|YP_001063115.1| DNA-binding response regulator [Burkholderia pseudomallei 668] ref|YP_001076056.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] ref|ZP_01768890.1| DNA-binding response regulator [Burkholderia pseudomallei 305] ref|ZP_02415910.1| DNA-binding response regulator [Burkholderia pseudomallei 14] ref|ZP_02451984.1| DNA-binding response regulator [Burkholderia pseudomallei 91] ref|ZP_02475642.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] ref|ZP_04812497.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] ref|ZP_04893330.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04900635.1| DNA-binding response regulator [Burkholderia pseudomallei S13] ref|ZP_04955021.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] ref|ZP_04968944.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] emb|CAH38967.1| putative two-component response regulator protein [Burkholderia pseudomallei K96243] gb|ABA51757.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gb|ABN86844.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gb|ABN93658.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gb|EBA46801.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gb|EDO87962.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gb|EDO90168.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gb|EDS83647.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gb|EES23122.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gb|EET04543.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 245 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 69/135 (51%), Positives = 88/135 (65%), Gaps = 2/135 (1%) Query: 4 TPPPRILVVDDDQALRQLLVDYLSGHGLIVDSAATGAQAQAAVQATQYDMVLLDLGLPDV 63 T P +LVV+DD+ LR++L +YLSGHG+ VD T A A +V +Y+MVLLDLGLPD Sbjct: 5 TRSPAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLPDG 64 Query: 64 DGAELARGWRAAGGLSIICVTGRNEEADMVMGLELGADDYITKPFSPREVLXSCDA--RP 121 DG ++ WR +ICVTGR+EEAD +MGLE GADDY+ KP+S REVL A R Sbjct: 65 DGIDVLLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRALWRR 124 Query: 122 ASAGLSLRRLGAQPQ 136 A + R G P+ Sbjct: 125 AEPSTTPVRRGRHPR 139 >ref|ZP_02486145.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] ref|ZP_02510364.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] Length = 245 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 69/135 (51%), Positives = 88/135 (65%), Gaps = 2/135 (1%) Query: 4 TPPPRILVVDDDQALRQLLVDYLSGHGLIVDSAATGAQAQAAVQATQYDMVLLDLGLPDV 63 T P +LVV+DD+ LR++L +YLSGHG+ VD T A A +V +Y+MVLLDLGLPD Sbjct: 5 TRSPAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLPDG 64 Query: 64 DGAELARGWRAAGGLSIICVTGRNEEADMVMGLELGADDYITKPFSPREVLXSCDA--RP 121 DG ++ WR +ICVTGR+EEAD +MGLE GADDY+ KP+S REVL A R Sbjct: 65 DGIDVLLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRALWRR 124 Query: 122 ASAGLSLRRLGAQPQ 136 A + R G P+ Sbjct: 125 AEPSTTPVRRGRHPR 139 >ref|YP_439069.1| DNA-binding response regulator [Burkholderia thailandensis E264] ref|ZP_02384272.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gb|ABC36101.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 244 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 68/138 (49%), Positives = 89/138 (64%), Gaps = 2/138 (1%) Query: 1 MSITPPPRILVVDDDQALRQLLVDYLSGHGLIVDSAATGAQAQAAVQATQYDMVLLDLGL 60 M+ T P +LVV+DD+ LR++L +YL+GHG+ VD T A A +V +Y+MVLLDLGL Sbjct: 1 MNATRSPAVLVVEDDEPLRRVLCNYLTGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGL 60 Query: 61 PDVDGAELARGWRAAGGLSIICVTGRNEEADMVMGLELGADDYITKPFSPREVLXSCDA- 119 PD DG ++ WR + +ICVT R EEAD +MGLE GADDY+ KP+S REVL A Sbjct: 61 PDGDGIDVLLRWRDSQRFPLICVTARGEEADRIMGLEFGADDYVVKPYSLREVLARMRAL 120 Query: 120 -RPASAGLSLRRLGAQPQ 136 R A + R G P+ Sbjct: 121 WRRAEPSAAPVRRGRHPR 138